EWM30004.1, cds671 (CDS) Nannochloropsis gaditana

Overview
NameEWM30004.1
Unique Namecds671
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:130645..130777 -
Alignment locationCM002456.1:130104..130549 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30004.1
Productmgmt family protein
Orig transcript idgnl|cribi|Naga_100425g3.7075.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:130645..130777 -
CM002456.1supercontigCM002456.1:130104..130549 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR014048MethylDNA_cys_MeTrfase_DNA-bd
IPR011991WHTH_DNA-bd_dom
Homology
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|585112615|gb|EWM30004.1| (mgmt family protein [Nannochloropsis gaditana])

HSP 1 Score: 401.749 bits (1031), Expect = 8.666e-142
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MGDKDAIFYDYHEEFAESKFDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVPRSYAWETGSAQSLAELIKGRQAEEEEDGMTAKEVKEGESHKMKEKSRKRCKREEGTKEQQSIQRDMIRTSAP 192
            MGDKDAIFYDYHEEFAESKFDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVPRSYAWETGSAQSLAELIKGRQAEEEEDGMTAKEVKEGESHKMKEKSRKRCKREEGTKEQQSIQRDMIRTSAP
Sbjct:    1 MGDKDAIFYDYHEEFAESKFDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVPRSYAWETGSAQSLAELIKGRQAEEEEDGMTAKEVKEGESHKMKEKSRKRCKREEGTKEQQSIQRDMIRTSAP 192          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|1063856836|ref|XP_017991951.1| (mgmt family protein [Malassezia pachydermatis] >gi|924816185|gb|KOS14319.1| mgmt family protein [Malassezia pachydermatis])

HSP 1 Score: 103.99 bits (258), Expect = 2.321e-25
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   16 AESKFDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQ-----DAMGVWRV 119
            A+  F+   F  +V+ C   +P G+VTTYGHIA+L   P+H+R VGQAL+ L  + SVPWQRV+ +   IS RGDGG GA  QA RL EEGV+V +     +A G WRV
Sbjct:    4 ADELFNAERFHSMVYECTRLIPYGRVTTYGHIAKLIGYPRHSRMVGQALKFLQ-DDSVPWQRVVGSGGVISERGDGGAGAARQADRLREEGVSVVEARLRHNARGAWRV 111          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|1024110305|gb|KZW01473.1| (MGMT family protein [Exidia glandulosa HHB12029])

HSP 1 Score: 100.138 bits (248), Expect = 9.574e-24
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 0
Query:   20 FDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVPRS-YAW 125
             D A F   V+  V  +P G+VT+YGH+A+L   P+H+RHVGQAL+ LP NT+VPWQRVI++S TIS RG G  GA+ Q   L  EGV V +   G   V  + Y W
Sbjct:    1 MDSAEFHAHVYRVVREIPAGRVTSYGHVAKLMGMPRHSRHVGQALKFLPPNTNVPWQRVISSSGTISSRGPGTNGADRQRQALEAEGVEVREGRTGELLVSLADYGW 107          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|751680426|gb|KIM30585.1| (hypothetical protein M408DRAFT_287780 [Serendipita vermifera MAFF 305830])

HSP 1 Score: 97.8265 bits (242), Expect = 7.634e-23
Identity = 55/126 (43.65%), Postives = 75/126 (59.52%), Query Frame = 0
Query:   20 FDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVP-RSYAWETGSAQSLAELIKGRQAEE 144
             D A F   V+  +  +P GKVT+YGHIA L   P+H+RHVG AL+ L   + VPWQRV++++  IS RG G TGA  QA  L  EG+TV +   G +RV  R+Y W      +LA+  +G   +E
Sbjct:    1 MDLAEFYEQVYDTIRLIPYGKVTSYGHIAALIGMPRHSRHVGGALKMLDPESDVPWQRVVSSTGAISSRGPGTTGARRQAEALEAEGLTVEETRAGQFRVNFRTYGW---FPATLADATRGDGDDE 123          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|660966584|gb|KEP51042.1| (DNA-binding methylated-DNA-cysteine S-methyltransferase [Rhizoctonia solani 123E])

HSP 1 Score: 97.0561 bits (240), Expect = 1.385e-22
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   20 FDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMG 115
             D A F   V+  V  +P G+VT+YGHIA++   P+H+RHVGQAL+ LP  + +PW RVI ++ TIS RG G TGA+ Q   L  EGV VS  A+G
Sbjct:    1 MDAAEFHARVYAAVREIPIGRVTSYGHIAKIVGMPRHSRHVGQALKFLPNGSDIPWHRVIASNGTISSRGPGTTGADRQRQALQAEGVEVSFSALG 96          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|576983203|gb|EUC55946.1| (DNA-binding methylated-DNA-cysteine S-methyltransferase [Rhizoctonia solani AG-3 Rhs1AP])

HSP 1 Score: 96.6709 bits (239), Expect = 1.611e-22
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   20 FDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMG 115
             D A F   V+  V  +P G+VT+YGHIA++   P+H+RHVGQAL+ LP  + +PW RVI ++ TIS RG G TGA+ Q   L  EGV VS  A+G
Sbjct:    1 MDAAEFHARVYAAVREIPIGRVTSYGHIAKIVGMPRHSRHVGQALKFLPDGSDIPWHRVIASNGTISSRGPGTTGADRQRQALQAEGVEVSFSALG 96          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|752374652|gb|KIO32374.1| (hypothetical protein M407DRAFT_241459 [Tulasnella calospora MUT 4182])

HSP 1 Score: 96.6709 bits (239), Expect = 2.141e-22
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 0
Query:   20 FDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVP-RSYAW 125
             D A F   V+     +P GKVT+YGH+A+L   P ++RHVGQAL+ LP +T VPWQRVI++S  IS RG G  GA  Q   L  EGV VS+   G  +V  R+Y W
Sbjct:    1 MDAAEFHAEVYRIAALIPVGKVTSYGHVAKLIGMPNYSRHVGQALKFLPEDTDVPWQRVISSSGAISSRGPGTDGARRQREALEAEGVEVSEGRGGELKVDLRTYGW 107          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|1069908052|ref|XP_018261408.1| (methylated-DNA-protein-cysteine methyltransferase [Kwoniella dejecticola CBS 10117] >gi|1039709702|gb|OBR83566.1| methylated-DNA-protein-cysteine methyltransferase [Kwoniella dejecticola CBS 10117])

HSP 1 Score: 95.9005 bits (237), Expect = 2.861e-22
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0
Query:   36 VPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTV 109
            +P GKVT+YGHIA+L   PK++RHVG AL+ LP NT +PWQRVIN+   ISPRGD G G   Q  RL  EGV V
Sbjct:   18 IPFGKVTSYGHIAKLAGYPKYSRHVGNALKALPPNTDIPWQRVINSRGMISPRGDLGEGVARQKDRLENEGVEV 91          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|598043333|ref|XP_007351039.1| (MGMT family protein [Auricularia subglabra TFB-10046 SS5] >gi|393233302|gb|EJD40875.1| MGMT family protein [Auricularia subglabra TFB-10046 SS5])

HSP 1 Score: 95.9005 bits (237), Expect = 3.664e-22
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 0
Query:   20 FDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVP-RSYAWETGSAQSLA 134
             D A F  L +  +  VP G+VT+YGHIA+L   P+H+RHVGQAL+ LP  T+VPWQRV+++S  IS RG G  GA+ Q   L  EGV V+    G   +   +Y W   S    A
Sbjct:    1 MDSAEFHALAYNIIRQVPFGRVTSYGHIAKLMGMPRHSRHVGQALKFLPPGTNVPWQRVVSSSGAISSRGPGTDGAQRQREALEAEGVDVTVGRTGELLISLATYGWFPASVDGAA 116          
BLAST of EWM30004.1 vs. NCBI_GenBank
Match: gi|353227223|emb|CCA77740.1| (related to methylated-dna--protein-cysteine methyltransferase [Serendipita indica DSM 11827])

HSP 1 Score: 95.5153 bits (236), Expect = 4.356e-22
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:   20 FDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRV 119
             D A F   V+  V  VP+GKVT+YGHIA L   P+H+RHVG AL+ L  ++ VPWQR+++++  IS RG G TGA+ QA  L  EGV V    MG ++V
Sbjct:    1 MDLAEFYEKVYDTVRLVPQGKVTSYGHIAALVGMPRHSRHVGAALKILHEDSDVPWQRIVSSTGVISSRGPGTTGAQRQAEALEAEGVHVETTRMGQFKV 100          
The following BLAST results are available for this feature:
BLAST of EWM30004.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112615|gb|EWM30004.1|8.666e-142100.00mgmt family protein [Nannochloropsis gaditana][more]
gi|1063856836|ref|XP_017991951.1|2.321e-2550.46mgmt family protein [Malassezia pachydermatis] >gi... [more]
gi|1024110305|gb|KZW01473.1|9.574e-2449.53MGMT family protein [Exidia glandulosa HHB12029][more]
gi|751680426|gb|KIM30585.1|7.634e-2343.65hypothetical protein M408DRAFT_287780 [Serendipita... [more]
gi|660966584|gb|KEP51042.1|1.385e-2250.00DNA-binding methylated-DNA-cysteine S-methyltransf... [more]
gi|576983203|gb|EUC55946.1|1.611e-2250.00DNA-binding methylated-DNA-cysteine S-methyltransf... [more]
gi|752374652|gb|KIO32374.1|2.141e-2248.60hypothetical protein M407DRAFT_241459 [Tulasnella ... [more]
gi|1069908052|ref|XP_018261408.1|2.861e-2260.81methylated-DNA-protein-cysteine methyltransferase ... [more]
gi|598043333|ref|XP_007351039.1|3.664e-2244.83MGMT family protein [Auricularia subglabra TFB-100... [more]
gi|353227223|emb|CCA77740.1|4.356e-2249.00related to methylated-dna--protein-cysteine methyl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna671rna671Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications