EWM30014.1, cds661 (CDS) Nannochloropsis gaditana

Overview
NameEWM30014.1
Unique Namecds661
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:103305..103504 +
Alignment locationCM002456.1:103666..104140 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30014.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100802g4.3723.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:103305..103504 +
CM002456.1supercontigCM002456.1:103666..104140 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM30014.1 vs. NCBI_GenBank
Match: gi|585112636|gb|EWM30014.1| (hypothetical protein Naga_100802g4 [Nannochloropsis gaditana])

HSP 1 Score: 444.891 bits (1143), Expect = 7.405e-158
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 
Query:    1 MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKKTSPILPSVTSPPSIEARYTRSSPRGTSTVHGNHTTVLGRRHASATRLVPACHLTSAASSSSSSSSSSSSSSPVWGGLSLGLDPKLMNEPSSPSSVPLLPHRQVPDHALRITTVSYMDSSTYIPFPHKDGIDARAFPTNPANFKVRASDISKYGGTGEGKMMGGALSETAGLLDL 224
            MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKKTSPILPSVTSPPSIEARYTRSSPRGTSTVHGNHTTVLGRRHASATRLVPACHLTSAASSSSSSSSSSSSSSPVWGGLSLGLDPKLMNEPSSPSSVPLLPHRQVPDHALRITTVSYMDSSTYIPFPHKDGIDARAFPTNPANFKVRASDISKYGGTGEGKMMGGALSETAGLLDL
Sbjct:    1 MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKKTSPILPSVTSPPSIEARYTRSSPRGTSTVHGNHTTVLGRRHASATRLVPACHLTSAASSSSSSSSSSSSSSPVWGGLSLGLDPKLMNEPSSPSSVPLLPHRQVPDHALRITTVSYMDSSTYIPFPHKDGIDARAFPTNPANFKVRASDISKYGGTGEGKMMGGALSETAGLLDL 224
[Close]
BLAST of EWM30014.1 vs. NCBI_GenBank
Match: gi|553181100|ref|XP_005853513.1| (hypothetical protein NGA_0483200, partial [Nannochloropsis gaditana CCMP526] >gi|422295546|gb|EKU22845.1| hypothetical protein NGA_0483200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.149 bits (531), Expect = 2.256e-66
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 
Query:    1 MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKKTSPILPSVTSPPSIEARYTRSSPRGTSTVHGNHTTVLGRRHASATRLVPACHLTSAASSSS 111
            MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKKTSPILPSVTSPPSIE RYTRSSPRGTSTVHGN+TTVLGRR+ASATRLVPACHLTSAASSSS
Sbjct:    1 MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKKTSPILPSVTSPPSIEPRYTRSSPRGTSTVHGNYTTVLGRRYASATRLVPACHLTSAASSSS 111
The following BLAST results are available for this feature:
BLAST of EWM30014.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112636|gb|EWM30014.1|7.405e-158100.00hypothetical protein Naga_100802g4 [Nannochloropsi... [more]
gi|553181100|ref|XP_005853513.1|2.256e-6697.30hypothetical protein NGA_0483200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna661rna661Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications