rna661, rna661 (mRNA) Nannochloropsis gaditana

Overview
Namerna661
Unique Namerna661
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length519
Alignment locationCM002456.1:103219..104287 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100802g4.3723.mrna
Orig protein idgnl|cribi|Naga_100802g4.3723
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:103219..104287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100802g4gene634Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna661rna661-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30014.1cds661Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna661 ID=rna661|Name=rna661|organism=Nannochloropsis gaditana|type=mRNA|length=519bp
ATGCCCGACTGGAGTGGTGCTCGTGACCCCAAACAACCACAACCCGTGTG
TTCCACCCTCACCAACGCCGCCTTAAGCAGCCCGTCGTCCCTTTTCTGGA
CGGGCACGCTCGCCCGTTCCCAAACTCGTCTTTTTCGGCAAGCTGTGCAA
GAAGAGATGCGGCGCCTTCAACACCACGATGGCCTTCCTCGCGCGGCTGC
CGTGGAAAAGCTACTGGCGCGACTCAACTCCCCGGACGCCCCATTAAATG
CAGTGTCGACATCCCCGTACCATAAAACAAAGCCTGTGCTCACGTCGGAG
CTCCATGCGGTCATGGAATGCTATGGTCTCACACCTGAGGAAGCCCGTCG
GGCCTTACTCGTGAAGAGCGCTCTGGGACAATTAAGGCGACAAGGCTGGG
ACGCATCGACGGCTTTGATGGAGCTGACTGCACGCATGGTGCCTTTGCGT
CTGTCCTCGCCATCTTCTCCGGCTGTTGAGCCGGGGTGGGTGCGGGAGGT
GTTGAAAACGGGGAAATGA
back to top

protein sequence of rna661

>rna661-protein ID=rna661-protein|Name=rna661|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MPYPRTATKCLLPRASAAVGMYEKVTRRSTSQAAIGTAASPPSTPTFIKK
TSPILPSVTSPPSIEARYTRSSPRGTSTVHGNHTTVLGRRHASATRLVPA
CHLTSAASSSSSSSSSSSSSSPVWGGLSLGLDPKLMNEPSSPSSVPLLPH
RQVPDHALRITTVSYMDSSTYIPFPHKDGIDARAFPTNPANFKVRASDIS
KYGGTGEGKMMGGALSETAGLLDL
back to top

mRNA from alignment at CM002456.1:103219..104287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna661 ID=rna661|Name=rna661|organism=Nannochloropsis gaditana|type=mRNA|length=1069bp|location=Sequence derived from alignment at CM002456.1:103219..104287+ (Nannochloropsis gaditana)
GCCGGTCATCATGAACCGATGATGAAAAAAGAACAGATTTCTCACCACTA
AACCCTTTGTTATGACACGCATCACAGGCTCACCGCATGCCTTACCCACG
CACGGCGACAAAATGCCTCCTGCCACGTGCTAGTGCAGCCGTGGGCATGT
ACGAAAAGGTCACTCGACGTAGTACATCGCAAGCGGCCATTGGAactgct
gcctcccctccctccaccccaacATTTATAAAGAAAACAAGCCCAATTTT
GCCCTCCGTCACGTCACCTCCCTCAATTGAAGCTAGGTACGTGCAGGGTC
TTTCCCTTGTTGGGAAAACGTGTTTCTAGCGGCGTTCATCTTTCTCTCCA
CCGCGGGGAAGGGACTGATTCTTTACCCAGCTGGTGCTGATGAACAATTT
GCCGAtgcacacacacacaccctTTTCTTTGCCACTACCACGCACAGATA
CACGCGCAGCTCTCCTCGTGGGACATCCACGGTTCATGGCAATCACACGA
CCGTGCTGGGGCGGAGGCACGCCTCAGCCACTCGACTCGTCCCCGCTTGT
CACCTtacctcggccgcctcctcctcctcctcctcctcctcctcctcctc
ctcctcctcccccgtctggGGCGGGCTAAGTCTGGGATTGGACCCAAAGC
TGATGAAtgagccgtcctccccttcctccgttcccctcctcccccaccgt
caaGTACCCGACCACGCGCTGCGTATCACCACCGTGTCCTACATGGATTC
TTCCACCTACATACCCTTTCCTCACAAGGACGGCATTGACGCCAGGGCCT
TTCCCACCAATCCTGCGAATTTCAAGGTACGTGCGTCGGATATTTCCAAA
TACGGGGgaacgggggaaggaaagatgatGGGCGGTGCTCTCTCGGAAAC
GGCCGGCCTTCTAGACCTTtaaattcaaaattttgagcACGAGATGGGTA
CTCGCGGCCTATTTTCGGGGCTTGCGAGACCTTGGGAGCTCTTGCGATGC
CGAGAATCTTCGACCAGGCTTTCTCCTCAAttagcctcctccccgtccct
ccctccctccctccctccc
back to top

Coding sequence (CDS) from alignment at CM002456.1:103219..104287+

>rna661 ID=rna661|Name=rna661|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002456.1:103219..104287+ (Nannochloropsis gaditana)
ATGCCTTACCCACGCACGGCGACAAAATGCCTCCTGCCACGTGCTAGTGC
AGCCGTGGGCATGTACGAAAAGGTCACTCGACGTAGTACATCGCAAGCGG
CCATTGGAactgctgcctcccctccctccaccccaacATTTATAAAGAAA
ACAAGCCCAATTTTGCCCTCCGTCACGTCACCTCCCTCAATTGAAGCTAG
ATACACGCGCAGCTCTCCTCGTGGGACATCCACGGTTCATGGCAATCACA
CGACCGTGCTGGGGCGGAGGCACGCCTCAGCCACTCGACTCGTCCCCGCT
TGTCACCTtacctcggccgcctcctcctcctcctcctcctcctcctcctc
ctcctcctcctcccccgtctggGGCGGGCTAAGTCTGGGATTGGACCCAA
AGCTGATGAAtgagccgtcctccccttcctccgttcccctcctcccccac
cgtcaaGTACCCGACCACGCGCTGCGTATCACCACCGTGTCCTACATGGA
TTCTTCCACCTACATACCCTTTCCTCACAAGGACGGCATTGACGCCAGGG
CCTTTCCCACCAATCCTGCGAATTTCAAGGTACGTGCGTCGGATATTTCC
AAATACGGGGgaacgggggaaggaaagatgatGGGCGGTGCTCTCTCGGA
AACGGCCGGCCTTCTAGACCTTtaaATGCCTTACCCACGCACGGCGACAA
AATGCCTCCTGCCACGTGCTAGTGCAGCCGTGGGCATGTACGAAAAGGTC
ACTCGACGTAGTACATCGCAAGCGGCCATTGGAactgctgcctcccctcc
ctccaccccaacATTTATAAAGAAAACAAGCCCAATTTTGCCCTCCGTCA
CGTCACCTCCCTCAATTGAAGCTAGATACACGCGCAGCTCTCCTCGTGGG
ACATCCACGGTTCATGGCAATCACACGACCGTGCTGGGGCGGAGGCACGC
CTCAGCCACTCGACTCGTCCCCGCTTGTCACCTtacctcggccgcctcct
cctcctcctcctcctcctcctcctcctcctcctcctcccccgtctggGGC
GGGCTAAGTCTGGGATTGGACCCAAAGCTGATGAAtgagccgtcctcccc
ttcctccgttcccctcctcccccaccgtcaaGTACCCGACCACGCGCTGC
GTATCACCACCGTGTCCTACATGGATTCTTCCACCTACATACCCTTTCCT
CACAAGGACGGCATTGACGCCAGGGCCTTTCCCACCAATCCTGCGAATTT
CAAGGTACGTGCGTCGGATATTTCCAAATACGGGGgaacgggggaaggaa
agatgatGGGCGGTGCTCTCTCGGAAACGGCCGGCCTTCTAGACCTTtaa
back to top
Synonyms
Publications