rna654, rna654 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna654
Unique Name	rna654
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2245
Alignment location	CM002456.1:89621..91368 +

Link to JBrowse

Properties


Property Name	Value
Product	formamidopyrimidine-dna glycosylase
Orig transcript id	gnl\|cribi\|Naga_100391g3.3409.mrna
Orig protein id	gnl\|cribi\|Naga_100391g3.3409
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:89621..91368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100391g3	gene627	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna654	rna654-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30020.1	cds654	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:89621..91368+
coding sequence from alignment at CM002456.1:89621..91368+

mRNA sequence

>rna654 ID=rna654|Name=rna654|organism=Nannochloropsis gaditana|type=mRNA|length=2245bp
CCTCCTCCCTGTGCTACCACTTAGGAAAACATGTGAAAGCAGGGAGATGG
GCAGGCAAAGCCTGGCAGGAACATGGGGCGAGAGCGGTAACAGAATAAGG
AAGAGGATAATAATGAGCGAATCAAATTAGACGGGGTCGAGCTTCTTATT
CCGAGTAAAGTCCCTTATGTGATAGTGGGCCCGTGCAGGCATGCATCTCC
CGGCGCAAACGGGGCAATTTGCTTGGTGATTACCATTTAACTCGCGCACT
CCTTGCGTCGTGGCGGTGGAAATCCTGGTCTATGAAGTCCAAGACACGCT
AAGCAGACAGTGGTTGAGGTGCACAGGCGACGCAAGCGATCCTGCTGCCC
AATTAAAACCTGCAACAAACTCTACTCGTGCCCGCCCACACACGCAGTTT
TGTCATCAAAGTGACATGAACTGAACACTGACGCACCAACACCCACAATT
ACGACCCCACAATTACGAATTTAGACGTTCGAACGGTGCCTGTCGATGGC
GGCGTGTTCAAAAAGAAGAGAGCCACACAGGACGGTCAGGGGTAGCCTCC
TCCCCCCTTGTCTTGGGACTCTCGTGTTTCTCCTTTTGCAGCCCCAAATC
GCGGACACCTTTAGAATAAGACACACTTCCACCCAAACAATCCTTCTTTC
TGGCTGCTCTGCTACGTCGGTTATCAGAAGATGGGGTTCAATGACGATGG
AAGAGGGGCAGGAAAACTGCAATGAGATGATTAAAATAAGAGCGTTGCGA
CATTATTGGCCCAAAAGTAAGGGCTTCAAATCATTGCAAGCATTGAGCAA
GCTTGCACCTGCGTTTTGGGGCCTTTTCTTGGGCGTGCGCCCTCTTTATC
CTCTTCCTCAGGCCGCCTACGCCGGCCCAAGCAGCCCAGCGACGACCGGC
ACCACCGCTACTCCCCCTGTTTTCTCCGTCACTTCGCCCAATTTCCCCCC
CACCCAAGCAGCTGCGGACACAGACGATCTCTTTGACGAGGTCTGGAAAC
TGACTTCCAAGTTTTACCTGGACAGGAGTTTCGGAGGGAACGACTGGGGA
CAGGCGCGGGCTGACTTACGGAGTCAGGGGAAACTACCTGGAGACAGCGC
CAGTGAGACCATGGCCACGAAAAAACTGTTGAAAAAGCTTGGAGATAAAT
ACACCCAGCTTCTCTCCCCTTACATGTACATGGCCATGAGCCGTTTCGAC
CCGATCGGCGCCGGCTTCATGCTCTCGGTGGACGACGACGGGTATTTTTG
CGTGTCCTCCGACCCCCGAGACGGGACCCGGGCCGCCAAGGAACGCGTGG
AAAAAGGGGACAAGATTCTAGAAATCGAAGGTGTGGCGATCAAGGGGAAA
AGCGTCTTTGACGCGGTGGATCTGATCACCAAGGAGGACAAGACGGACGT
GCGGCTGACCATTCAATCCAAGCGGGATCCTGCGGCCGCCCCCCGCGTCC
TCACGTTGCCCCGGGAGTTCAACACCGTCTCAAATCCAGTCACCAAGATG
CAGCTTACCACTGCCGAGGACGGGCGCAAGGTCGGGTATGTAAAACTCCG
AGAATTCAACTCTTTGGCCAAGGAAAAAGTGCGCGAAGCACTAACCTCCC
TCGAAAGCCAGGGCGCCGAGGCCTACGTCATCGATTTACGCGGGAATCCA
GGTGGATCTGTGCAAGCGGCGGTATCAGTAGCGTCGTTATTCCTACCCGA
GGACCAAATTGTCACTTTCATTCAAGACGCTACCGGCAACAAGCTACCTC
TGAAGACTCAGGGTGCGGCCGCCGTTCCTCGGGACCCTCTGGTGGTATGG
ACCGATAGAAAGTCCGCCAGTGCTTCCGAGATCTTGGCCAGCGCATTGCA
TGACAATTGTCGCGCGGTGCTGATGGGCCAGAGGACTTTTGGAAAAGGCT
TAGTTCAAGGAGTGTTTGGGTTGAACGATGGGAAGGGCCTGGTGATGACT
GTCGCGAAATATGAAACCCCACGGGGGGCGTCCATTCAGGGGACTGGTAT
CTTTCCGGATATTGAAACAGTCATTCCAAGTAGTATTTTAGGGGAGCAGG
ATATTAGCGTGGTCCGAGGGGAGGACTTCAGCTTGAAGGATAGGATCTGC
TTGGACAGAGGCGGGAAGCAATGAGGATTTGGAGGCAGAAACAAACACGA
CAAAGAAATTAATTTCACTGTGAAGTTCTTAATCACTCGTTCAAAAGCAT
TGGTAATACATCCAGTCAGGAAAAGGCCCTTCACACACACAGTGA

protein sequence of rna654

>rna654-protein ID=rna654-protein|Name=rna654|organism=Nannochloropsis gaditana|type=polypeptide|length=456bp
MPELPEVAALASAIKKEVIGRRLVHVLTKEQGGGPRHGLYDDLVFGKADE
QEVHRSMEGRVLTAVGRRGKHLWMELCDSFPSCSQGRNHRGSAIPSKASK
TMDDDTRFVLFHMGMTGSLVFQHVAIPQYRSFALDVTEGWPPKHCKAEFV
FEESPKEGDRNNELRLAFCDQRRWGRIQILPAGVVDPRTESPLKELAPDA
WMERPDLAVFAERLKGTDIPVKAALLDQHRIVCGVGNWVADEVLYQAGAD
PAKKCSVLKEEEVRRVWEMLAHVCGTACAVNGRSEAFPSDWLFHFRWAKS
KKDKAGVRGPDGRRVVFETVGGRTTAIVPSVQRIKGGRIKDKVEGEVVEE
QEKVGKGSRAQSGSTRAKKVIKIEGENNDTETSEKERGKRTKPINYGAAA
RKETKTRKKIPGSSPSGAKVRQGTKQRSAGKEAENASCTAHAEPRRSPRA
RPAGKK

mRNA from alignment at CM002456.1:89621..91368+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna654 ID=rna654|Name=rna654|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp|location=Sequence derived from alignment at CM002456.1:89621..91368+ (Nannochloropsis gaditana)
AGCTCTCTGATATACTCTGTATCATTCGTCCCATCGAAATGCTTGCAGTA
TATTTTACTAAGGTTGCATGTTAAGTTACAGGCGAAGACTTGAAATAACC
TCCTGGTTCTGCTCATCCCAATCTACGTACAGACACACTAACACCACCCT
GTCATTTCCCCATATCGCAGCTCCCGAGATATGCCCGAACTACCCGAGGT
CGCTGCGTTAGCCTCAGCCATTAAAAAGGAGGTCATTGGTCGAAGGCTTG
TCCATGTGCTGACCAAGGAACAAGGTGGGGGGCCACGACACGGGTTGTAC
GATGACCTGGTTTTTGGAAAGGCCGACGAGCAGGAAGTACATCGTTCAAT
GGAAGGTCGGGTATTGACAGCTGTAGGACGTAGAGGCAAACATCTTTGGA
TGGAGCTCTGtgattccttcccttcttgcaGCCAAGGTAGAAATCACAGA
GGCAGCGCCATCCCATCAAAAGCCTCAAAGACAATGGATGACGACACACG
CTTTGTACTCTTTCACATGGGCATGACGGGTTCCTTGGTCTTTCAACACG
TGGCTATCCCTCAATACCGCTCGTTCGCCCTGGATGTCACCGAAGGTTGG
CCCCCGAAGCATTGTAAAGCCGAATTTGTATTTGAGGAGTCCCCAAAAGA
AGGCGACAGGAACAACGAGCTCCGCTTGGCCTTTTGCGACCAACGGCGAT
GGGGCCGTATACAAATCCTCCCTGCTGGTGTCGTGGATCCACGGACGGAA
TCACCACTGAAGGAGCTGGCGCCTGACGCATGGATGGAACGCCCTGACTT
GGCGGTCTTTGCGGAGAGACTGAAGGGGACCGACATACCGGTGAAAGCCG
CCCTGCTGGATCAACATCGCATCGTGTGTGGCGTGGGAAATTGGGTGGCA
GACGAGGTATTGTACCAGGCAGGCGCGGATCCCGCCAAAAAATGCAGCGt
tttgaaagaggaggaagtccgCCGGGTGTGGGAGATGTTGGCCCATGTGT
GTGGAACAGCCTGTGCTGTAAATGGTCGGAGCGAGGCCTTTCCGTCTGAT
TGGCTCTTTCACTTTCGATGGGCGAAATCCAAAAAAGACAAAGCCGGAGT
GCGGGGTCCAGATGGCCGCCGAGTAGTGTTTGAGACCGTGGGGGGTCGCA
CAACTGCGATAGTACCCTCGGTGCAGCGGattaagggagggagaataaAG
GATAAAGTAGAAGGCGAGGTTGTGGAGGAACAAGAAAAAGTAGGTAAAGG
TAGCAGGGCGCAATCAGGATCGACAAGGGCGAAGAAGGTGATCAAGATTG
AGGGAGAAAATAATGACACCGAAACgagcgagaaggaaagaggtaAAAGG
ACCAAACCAATAAATTACGGAGCTGCGGCTCGTAAAGAGACCAAGACACG
AAAAAAGATACCAGGGAGCTCACCATCGGGAGCCAAAGTTCGTCAAGGTA
CAAAACAGAGAAgcgcaggaaaggaagcagaAAATGCATCATGTACAGCT
CACGCTGAACCACGGAGGAGCCCCCGAGCTAGACCAGCTGGCAAGAAATA
GATGCAGCAAACAGGAGAAGAGCATTCTCAGAAGTGTTCAATAAATAGAA
TACAGGAATGTGGTGACATCCTGGACTGTTTTTCAGAGCAGAGTATCGAT
GAgtatttctttccctcccctggaAAGTATCCGTACGTGACTGAAGAAAT
CCTAGCTCAACTTCTCAAGCCAATTTCCTACTCAAATGTCTTACGAAA

Coding sequence (CDS) from alignment at CM002456.1:89621..91368+

>rna654 ID=rna654|Name=rna654|organism=Nannochloropsis gaditana|type=CDS|length=1371bp|location=Sequence derived from alignment at CM002456.1:89621..91368+ (Nannochloropsis gaditana)
ATGCCCGAACTACCCGAGGTCGCTGCGTTAGCCTCAGCCATTAAAAAGGA
GGTCATTGGTCGAAGGCTTGTCCATGTGCTGACCAAGGAACAAGGTGGGG
GGCCACGACACGGGTTGTACGATGACCTGGTTTTTGGAAAGGCCGACGAG
CAGGAAGTACATCGTTCAATGGAAGGTCGGGTATTGACAGCTGTAGGACG
TAGAGGCAAACATCTTTGGATGGAGCTCTGtgattccttcccttcttgca
GCCAAGGTAGAAATCACAGAGGCAGCGCCATCCCATCAAAAGCCTCAAAG
ACAATGGATGACGACACACGCTTTGTACTCTTTCACATGGGCATGACGGG
TTCCTTGGTCTTTCAACACGTGGCTATCCCTCAATACCGCTCGTTCGCCC
TGGATGTCACCGAAGGTTGGCCCCCGAAGCATTGTAAAGCCGAATTTGTA
TTTGAGGAGTCCCCAAAAGAAGGCGACAGGAACAACGAGCTCCGCTTGGC
CTTTTGCGACCAACGGCGATGGGGCCGTATACAAATCCTCCCTGCTGGTG
TCGTGGATCCACGGACGGAATCACCACTGAAGGAGCTGGCGCCTGACGCA
TGGATGGAACGCCCTGACTTGGCGGTCTTTGCGGAGAGACTGAAGGGGAC
CGACATACCGGTGAAAGCCGCCCTGCTGGATCAACATCGCATCGTGTGTG
GCGTGGGAAATTGGGTGGCAGACGAGGTATTGTACCAGGCAGGCGCGGAT
CCCGCCAAAAAATGCAGCGttttgaaagaggaggaagtccgCCGGGTGTG
GGAGATGTTGGCCCATGTGTGTGGAACAGCCTGTGCTGTAAATGGTCGGA
GCGAGGCCTTTCCGTCTGATTGGCTCTTTCACTTTCGATGGGCGAAATCC
AAAAAAGACAAAGCCGGAGTGCGGGGTCCAGATGGCCGCCGAGTAGTGTT
TGAGACCGTGGGGGGTCGCACAACTGCGATAGTACCCTCGGTGCAGCGGa
ttaagggagggagaataaAGGATAAAGTAGAAGGCGAGGTTGTGGAGGAA
CAAGAAAAAGTAGGTAAAGGTAGCAGGGCGCAATCAGGATCGACAAGGGC
GAAGAAGGTGATCAAGATTGAGGGAGAAAATAATGACACCGAAACgagcg
agaaggaaagaggtaAAAGGACCAAACCAATAAATTACGGAGCTGCGGCT
CGTAAAGAGACCAAGACACGAAAAAAGATACCAGGGAGCTCACCATCGGG
AGCCAAAGTTCGTCAAGGTACAAAACAGAGAAgcgcaggaaaggaagcag
aAAATGCATCATGTACAGCTCACGCTGAACCACGGAGGAGCCCCCGAGCT
AGACCAGCTGGCAAGAAATAG

Synonyms

Publications