rna643, rna643 (mRNA) Nannochloropsis gaditana

Overview
Namerna643
Unique Namerna643
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1062
Alignment locationCM002456.1:72130..74452 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100346g7.7654.mrna
Orig protein idgnl|cribi|Naga_100346g7.7654
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:72130..74452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100346g7gene617Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna643rna643-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30026.1cds643Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna643 ID=rna643|Name=rna643|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
TCACCGCAGGCTAGTCGAAGTGCCCGTCTACACGTTCGCATTACCACGTG
CCACAACACGGACGCATCATACCTTTTTGTTAGCTCATTTATTGAAAAGC
ATCCTTCTCAATCAAGATTCTTCGCCTTAGAACATTGTCCGGGCGCCGCT
CTGATCGCTTTTCGCACGTTCACCATCTCCTCTCTGGCCTGCAGCATGTT
CTTTTTCTCCTTTCCCGCTACCACTCTTCTCACGTGGGGTGCAGCGGGTC
TCATTGGAGTCCTTTTACTGGCCGATGGCTTGTACAGTGCTCTTGCACCT
GTTCCACTCCATTCTTCCCTCTTCTATAATAAACATATGGTCTTCGGTCT
CATCTTGGCGGGCGTCCTGCTGATTTTAATCTCCCTGCCCCCGCTTCATT
CTTATTTTCGCGAAAGCAACGTCGGAGGAAAGAGGTCTTTGCCACCTTTA
GCTCCACTTCCCCCTCAATTCGCTGAGGTTGTTGCCCGGGCGGGTGAGGG
AGGAGGAGAACAAAGTCGGCAAGGCTCTGCGCACCCCACCCTCCCACTGC
TGTCTTTGGATGCTGCCATCCATATCTTAGGGGCAGATGTATCCCACGGC
TTATACTCTGTCGAGGCACGAGCACGACTCCTTCAATGCGGTCCCAACGA
GGTCAGCACGTCCGACGCGCCCTCCTATTTATCGATCTTCTTGAAAGAAC
TCTACGAAGGACCGCAGTTGTTGTTGATGGTGGTCGGGGTGGCTTATGCC
CTGGTCGGGTCCGTGCACGAATCTTGCACGGCTCTGGTGGTGATTTTCTT
GATGATTAACGCAGAGATAATCACAGAATATCGGGCGAAGCGGGCCCTGT
CCAGGCTGCAATCAACGGTGCCCAAACTTGCCGCTGTGCTTCGAGACGAA
GGGCAAGAGATGGAGGTTGCGGCGGCCACGGTGGTGCCAGGTGACCTCGT
AGTCCTCAGGTAGGACCTCACGCCCCCTCTCATCCACGTTTGTCTCCTCT
CTACGCAGACGGAGCCCATAGCCACCGAGCTCGGGGAGGGGCTCGTGTTC
TTTAATCCTGCC
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protein sequence of rna643

>rna643-protein ID=rna643-protein|Name=rna643|organism=Nannochloropsis gaditana|type=polypeptide|length=247bp
MPSIYELKKSLSLKSGEVLGTGFIVKDVEATMDEKKPRELYNFKVHLWVS
PPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYS
SYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALAV
AKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECG
HEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN
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mRNA from alignment at CM002456.1:72130..74452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna643 ID=rna643|Name=rna643|organism=Nannochloropsis gaditana|type=mRNA|length=2323bp|location=Sequence derived from alignment at CM002456.1:72130..74452- (Nannochloropsis gaditana)
GAGCACGATGAGGGTTTCACGCTGAGGGAATAACAAGAGTTTAACAGACA
AAAGCGGGGGAGAGCAGTAGAAGCAGCAAACGAGAATGTCCCTCCGCCAG
AATACTTTTCGAGCAGAGCCTCTTTGTACACCCCAACATTCAAGAATCCT
TACAGAGCAGGTACAATCCACTGCAAATGGTCATATTGTGGTCAGGTGTG
GCGGCTGGGATCTGTGACATCAGAACACTCGCCATAATCCAAAAAGCGAC
GCTTCTACCAGTTTAGCGGGGAAGGAAAGCTCCTACAGCAACTACAACAG
CAACATGTCACTTTTCCCCGTGCATTTCTGACTCTCCTTTGATTTGAGTG
GCCTATCTCCTTTCCTTTTGAAGTAGCTACAAATATTATATGCTCACTGT
GGGGTCGATCGATTTGTCTAAACGCCTGCGTGTATGGAAAAGGCTGAATT
GGGAGCAGTTGTCAACAGAACAATGCTGGCAGCACGCCCTACTCCTCTCA
CAACTTTCAAAACATGTAGATTATGCCTTCAATCTACGAACTTAAAAAAA
GTCTTTCACTGAAAAGCGGTGAAGTGCTGGGGACTGGATTCATTGTCAAG
GACGTCGAGGTTCGTGTAGTTGAGGTCTCTGGAGATGTCTCAGAGGAGCT
GTCTTAGAAGGGATCCGGGGGGACAAAAACTGTATGCATGTTTATTATTG
TAGATTCTCTCTATGGACGGGTATGGCCATATCTTAGCTAGTGGAGATGG
ATTATGTGACTTTCAATGGCTTCAAGCAGATGTATGCACAGAATACTACC
TGCGAAGACGCTTCACAGCCCGCCATCTCGTTATTTTCCTCCCACATCCA
CAATCCACACTATCGGAAAAACTCATTCCCCCGTCGGGTAGCAGGCCACA
ATGGACGAAAAGAAGCCAAGAGAGCTCTACAACTTCAAAGTCCATTTGTG
GGTCTCGCCCCCGTCTTCCTCTTCTTCTACTACCAAAAAACACAGCACCC
GTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTTTTGGACAAGGCTGATTTG
GAGGGGGCCGAAAAGGCGTTAATTCAGACGGCAGAAGAAAGGCAGATCAT
GTATTCTTCGTATGGATCTCCTTACGAAGTCCATCTGGAGCATGTCAAAG
CGACGCCTGCAGGTGAGGGGAGGCAGGAGAAAGTGGCTGGCACACGGAAG
GGAGAAGAAAGCGCGATTGAACAAGAAGGGCTGATAGAGATCCATGCGCT
GGCGGTAGCAAAACGTCGACGTGATCTGCCCCGGCTGTCGGATACCGGGC
ACGGGACAAGCGAAGAGGAGGAAGCTGCAGCGGACGACGACATGAAACGC
AGAGGTTTCCGAGTAGTCAAGGCGCATTTCAAATCCAGTCATTGTCCTGA
GTGCGGGCATGAGTTCATCCCTGGAGAGCATATCGCCAAACCTCAAGACG
AGCACAATCGTGGTGGTTGGGCTCATTCCACTTGCTTGGCGAAGCGGCTA
GAGACGCCTCAGACACCTACCAAGGAGCAAAAGGTTGAAGTAGGGAATTA
AAGACCCGACAAAGGACTTGCTCGAAGATCTGGGTGAGGGTGAGGTCGTA
TCTTATGCGAGAGGAATGCTTTAGTGACATTTTATTTTCTATGCTCTAAG
GTAGATTTTCCGAGAGTTAGAATTAGTGAGATCGTCGCCTGGCTGATTTA
AGGCTTCTAGATGCACTCAAGACATTTCACAGTGGCGAAACTTATTTGGT
AGGTTGACGGGACACAGTACATGCCTCCCATCCTCAATAATTAATCATAG
TGTCCTTCTGATCTTTACTTGCAGCATTCAGAGTTGACCCCCCACCTAAG
CCATATTACCATGAGACGTGATGATCATGGACTTTAGTGATATTGCTGTT
GCTTTTCATCGAATAAAACTAACTATTTCTTTGTGCCTTTAACCTCACCA
AATCGTCCCTCTTACTTCTTGCTAGGGTGCAGCAGGCTGAAAAGCAGAAA
GTGCTCAATTCCACTGATGCATGATTTTGAAATGTTTCGCTTCGAGACCC
ATGAAAACGCCCATAAATGCGCACTAAGACATTCTGGAACAGAATATAGT
CCATTGTATCTTTCAGCTTAACTAAATCAAACCTTGAATGCCAAATACAT
GACACTCTAAGCGCTGGATACGAGGCGTTGAACCTCCCAACGGTGGACGG
GGGCAGCGGATTTGAAATTTAAATCATCGGCGTTGTGCCTGGATATTTTT
CCAAGCAGCCATGCATACCACACACAATGTCGCACCACGTCTTGAACTTA
CAGCTGACATCAATTTATTTTCA
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Coding sequence (CDS) from alignment at CM002456.1:72130..74452-

>rna643 ID=rna643|Name=rna643|organism=Nannochloropsis gaditana|type=CDS|length=1488bp|location=Sequence derived from alignment at CM002456.1:72130..74452- (Nannochloropsis gaditana)
GCCACAATGGACGAAAAGAAGCCAAGAGAGCTCTACAACTTCAAAGTCCA
TTTGTGGGTCTCGCCCCCGTCTTCCTCTTCTTCTACTACCAAAAAACACA
GCACCCGTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTTTTGGACAAGGCT
GATTTGGAGGGGGCCGAAAAGGCGTTAATTCAGACGGCAGAAGAAAGGCA
GATCATGTATTCTTCGTATGGATCTCCTTACGAAGTCCATCTGGAGCATG
TCAAAGCGACGCCTGCAGGTGAGGGGAGGCAGGAGAAAGTGGCTGGCACA
CGGAAGGGAGAAGAAAGCGCGATTGAACAAGAAGGGCTGATAGAGATCCA
TGCGCTGGCGGTAGCAAAACGTCGACGTGATCTGCCCCGGCTGTCGGATA
CCGGGCACGGGACAAGCGAAGAGGAGGAAGCTGCAGCGGACGACGACATG
AAACGCAGAGGTTTCCGAGTAGTCAAGGCGCATTTCAAATCCAGTCATTG
TCCTGAGTGCGGGCATGAGTTCATCCCTGGAGAGCATATCGCCAAACCTC
AAGACGAGCACAATCGTGGTGGTTGGGCTCATTCCACTTGCTTGGCGAAG
CGGCTAGAGACGCCTCAGACACCTACCAAGGAGCAAAAGGTTGAAGTAGG
GAATTAAATGCCTTCAATCTACGAACTTAAAAAAAGTCTTTCACTGAAAA
GCGGTGAAGTGCTGGGGACTGGATTCATTGTCAAGGACGTCGAGGCCACA
ATGGACGAAAAGAAGCCAAGAGAGCTCTACAACTTCAAAGTCCATTTGTG
GGTCTCGCCCCCGTCTTCCTCTTCTTCTACTACCAAAAAACACAGCACCC
GTCGGAGCCCGGGGGCGAAGCGCCGCAAAGTTTTGGACAAGGCTGATTTG
GAGGGGGCCGAAAAGGCGTTAATTCAGACGGCAGAAGAAAGGCAGATCAT
GTATTCTTCGTATGGATCTCCTTACGAAGTCCATCTGGAGCATGTCAAAG
CGACGCCTGCAGGTGAGGGGAGGCAGGAGAAAGTGGCTGGCACACGGAAG
GGAGAAGAAAGCGCGATTGAACAAGAAGGGCTGATAGAGATCCATGCGCT
GGCGGTAGCAAAACGTCGACGTGATCTGCCCCGGCTGTCGGATACCGGGC
ACGGGACAAGCGAAGAGGAGGAAGCTGCAGCGGACGACGACATGAAACGC
AGAGGTTTCCGAGTAGTCAAGGCGCATTTCAAATCCAGTCATTGTCCTGA
GTGCGGGCATGAGTTCATCCCTGGAGAGCATATCGCCAAACCTCAAGACG
AGCACAATCGTGGTGGTTGGGCTCATTCCACTTGCTTGGCGAAGCGGCTA
GAGACGCCTCAGACACCTACCAAGGAGCAAAAGGTTGAAGTAGGGAATTA
AATGCCTTCAATCTACGAACTTAAAAAAAGTCTTTCACTGAAAAGCGGTG
AAGTGCTGGGGACTGGATTCATTGTCAAGGACGTCGAG
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Synonyms
Publications