EWM30026.1, cds643 (CDS) Nannochloropsis gaditana

Overview
NameEWM30026.1
Unique Namecds643
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:73844..73930 -
Alignment locationCM002456.1:72902..73558 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30026.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100346g7.7654.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:73844..73930 -
CM002456.1supercontigCM002456.1:72902..73558 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM30026.1 vs. NCBI_GenBank
Match: gi|585112652|gb|EWM30026.1| (hypothetical protein Naga_100346g7 [Nannochloropsis gaditana])

HSP 1 Score: 507.679 bits (1306), Expect = 0.000e+0
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 
Query:    1 MPSIYELKKSLSLKSGEVLGTGFIVKDVEATMDEKKPRELYNFKVHLWVSPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALAVAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN 247
            MPSIYELKKSLSLKSGEVLGTGFIVKDVEATMDEKKPRELYNFKVHLWVSPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALAVAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN
Sbjct:    1 MPSIYELKKSLSLKSGEVLGTGFIVKDVEATMDEKKPRELYNFKVHLWVSPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALAVAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN 247
[Close]
BLAST of EWM30026.1 vs. NCBI_GenBank
Match: gi|585112653|gb|EWM30027.1| (hypothetical protein Naga_100346g7 [Nannochloropsis gaditana])

HSP 1 Score: 503.442 bits (1295), Expect = 3.259e-180
Identity = 247/248 (99.60%), Postives = 247/248 (99.60%), Query Frame = 0 
Query:    1 MPSIYELKKSLSLKSGEVLGTGFIVKDVE-ATMDEKKPRELYNFKVHLWVSPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALAVAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN 247
            MPSIYELKKSLSLKSGEVLGTGFIVKDVE ATMDEKKPRELYNFKVHLWVSPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALAVAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN
Sbjct:    1 MPSIYELKKSLSLKSGEVLGTGFIVKDVEQATMDEKKPRELYNFKVHLWVSPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQEGLIEIHALAVAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTKEQKVEVGN 248
The following BLAST results are available for this feature:
BLAST of EWM30026.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112652|gb|EWM30026.1|0.000e+0100.00hypothetical protein Naga_100346g7 [Nannochloropsi... [more]
gi|585112653|gb|EWM30027.1|3.259e-18099.60hypothetical protein Naga_100346g7 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna643rna643Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications