EWM30025.1, cds642 (CDS) Nannochloropsis gaditana

Overview
NameEWM30025.1
Unique Namecds642
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:71169..71840 -
Alignment locationCM002456.1:70892..70987 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30025.1
Productcation-transporting atpase
Orig transcript idgnl|cribi|Naga_100346g8.7653.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:71169..71840 -
CM002456.1supercontigCM002456.1:70892..70987 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005388calcium-transporting ATPase activity
GO:0046872metal ion binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006816calcium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006413P-type_ATPase_IIA_PMR1
IPR008250ATPase_P-typ_transduc_dom_A
IPR004014ATPase_P-typ_cation-transptr_N
Homology
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|585112651|gb|EWM30025.1| (cation-transporting atpase [Nannochloropsis gaditana])

HSP 1 Score: 505.368 bits (1300), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MFFFSFPATTLLTWGAAGLIGVLLLADGLYSALAPVPLHSSLFYNKHMVFGLILAGVLLILISLPPLHSYFRESNVGGKRSLPPLAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLPLLSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255
            MFFFSFPATTLLTWGAAGLIGVLLLADGLYSALAPVPLHSSLFYNKHMVFGLILAGVLLILISLPPLHSYFRESNVGGKRSLPPLAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLPLLSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR
Sbjct:    1 MFFFSFPATTLLTWGAAGLIGVLLLADGLYSALAPVPLHSSLFYNKHMVFGLILAGVLLILISLPPLHSYFRESNVGGKRSLPPLAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLPLLSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|553183367|ref|XP_005853886.1| (hypothetical protein NGA_0429700, partial [Nannochloropsis gaditana CCMP526] >gi|422295175|gb|EKU22474.1| hypothetical protein NGA_0429700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 366.311 bits (939), Expect = 2.149e-125
Identity = 184/189 (97.35%), Postives = 186/189 (98.41%), Query Frame = 0
Query:    1 MFFFSFPATTLLTWGAAGLIGVLLLADGLYSALAPVPLHSSLFYNKHMVFGLILAGVLLILISLPPLHSYFRESNVGGKRSLPPLAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLPLLSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGS 189
            MFFFSFPATTLLTWGAAGLIGVLLLADGLYSALAPVPLH SLFYNKHMVFGLILAGVLLILISLPPLHSYFRES VGGKRSLPPLAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLP LSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLL+VVGVAYALVG+
Sbjct:    1 MFFFSFPATTLLTWGAAGLIGVLLLADGLYSALAPVPLHYSLFYNKHMVFGLILAGVLLILISLPPLHSYFRESTVGGKRSLPPLAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLPPLSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLVVVGVAYALVGA 189          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|1026776344|gb|OAE35074.1| (hypothetical protein AXG93_763s1070 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 115.546 bits (288), Expect = 1.440e-25
Identity = 78/209 (37.32%), Postives = 113/209 (54.07%), Query Frame = 0
Query:   47 HMVFGLILAGVLLILISLPPLHSYFRESNVGGKRSLPPLAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLPLLSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255
            ++  G+  AG+L+ L+ +P L+    +    GK+  PP   +    A+ V                   LP   + A + +  +D   GL   EA  R  + G NE      P Y S FLKEL+E  QLLL+ VGV Y   G++ E+ TA +VIFLM +AE+ TE+RAKRAL+ L+ + P  A V R EGQ M++ A ++VPGD+V+LR
Sbjct:   78 NLFLGVTAAGILMFLLMIPVLNKRRLKGKHNGKKK-PPRTVVDDDLAKKVW-----------------ALPAEKVCADLRV--SD-RVGLSHAEAETRYRRYGGNESVIYSEPGYWSFFLKELHEPAQLLLLCVGVLYLTFGTMEEAITAFLVIFLMASAEVGTEWRAKRALNSLEHSSPPEATVKR-EGQHMKLDARSLVPGDIVILR 264          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|971511410|dbj|GAQ86811.1| (p-type atpase [Klebsormidium nitens])

HSP 1 Score: 102.834 bits (255), Expect = 3.276e-21
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 0
Query:  141 ARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255
            A ARL + GPN V     P Y + F KE+YE PQLLL+ VGV YAL G + E+ TA  VI LM  AE+ TE+RAKRA+  L S+ PK A V R  G+ +E+    VVPGD+V+L+
Sbjct:  120 AEARLREYGPNAVDLGKGPGYWAFFFKEIYEPPQLLLLGVGVLYALFGGLSEAATAFAVIILMATAEVFTEWRAKRAVGALASSTPKYARVRRG-GRTLEIGRTDVVPGDVVLLK 233          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|504217725|ref|WP_014404827.1| (ATPase [Methanocella conradii] >gi|379320036|gb|AFC98988.1| cation-transporting P-type ATPase, HAD superfamily, subfamily IC [Methanocella conradii HZ254])

HSP 1 Score: 86.6557 bits (213), Expect = 1.068e-15
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 0
Query:  132 VSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVL 254
            +  GL   EAR RL   GPN +      S+L I  +E+ E   LLL+ VG  Y+L G + ++ T  VVI L++ AE+  EYRAK+A++ L      +A VLRD G   EV A  VVPGD++ L
Sbjct:    4 IERGLTEAEARGRLAIHGPNLIVKPREVSFLGIVAEEITEPMILLLLFVGAVYSLWGKLEDALTIFVVIILLVLAEVWNEYRAKKAIASLAKIAAPVAGVLRD-GAIKEVKAEEVVPGDVLAL 125          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|282157791|dbj|BAI62879.1| (cation-transporting ATPase [Methanocella paludicola SANAE])

HSP 1 Score: 85.5001 bits (210), Expect = 2.397e-15
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 0
Query:  135 GLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVL 254
            GL   EAR RL + GPN ++     S+L I  +E+ E   LLL+ VGV Y+  G++ ++ T  VVI L++ AE+  EYRAK+A++ L       A V+R  GQ  E+    VVPGD++VL
Sbjct:    9 GLTEAEARERLARYGPNRIARPREVSFLGIAAEEIREPMILLLLFVGVVYSFWGNLTDALTIFVVIVLLVLAEVWNEYRAKKAIASLSKIAAPRARVIRG-GQVEEIKTDDVVPGDVLVL 127          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|1175322479|ref|WP_081870272.1| (hypothetical protein [Lachnoclostridium phytofermentans])

HSP 1 Score: 85.5001 bits (210), Expect = 3.052e-15
Identity = 43/128 (33.59%), Postives = 78/128 (60.94%), Query Frame = 0
Query:  128 LGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255
            L +D+S GL S EA  RL + G N+++ S   ++  I  +E+ E   LLL+ +GV Y++ G + ++ T + VI  +   E+ TEY+AK+++  L+        V+RD G+ +E+  + +VPGD+++L+
Sbjct:   19 LNSDISKGLSSAEAEKRLKESGLNKITQSKTITFWDILFEEIKEPLILLLLTIGVIYSVWGKIGDTITIIFVILTVTLVEVYTEYKAKKSIESLRKLALPTTWVMRD-GKAVEIETSLIVPGDILILK 145          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|938509518|gb|KPQ42589.1| (cation-transporting ATPase [Candidatus Methanoperedens sp. BLZ1])

HSP 1 Score: 84.7297 bits (208), Expect = 3.838e-15
Identity = 45/122 (36.89%), Postives = 75/122 (61.48%), Query Frame = 0
Query:  133 SHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVL 254
            ++GL S EA+ +LL+ GPN +  +   S+  I   E+ E   LLL+VVG  Y++ G + ++ T  +VI L++ AE+  E+RAK+A++ L+        VLRD G+  E+ +  VVP D+++L
Sbjct:    6 NNGLSSSEAQEKLLKSGPNRIFKATEISFFGIARHEVTEPMILLLLVVGFFYSIWGKLEDAITIFIVIILLVFAEVYNEFRAKKAIASLEKIAAPRTRVLRD-GKITEIDSENVVPDDMLIL 126          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|1180000322|ref|WP_083522676.1| (hypothetical protein [Longilinea arvoryzae])

HSP 1 Score: 84.7297 bits (208), Expect = 5.587e-15
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 0
Query:  120 SLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255
            S+D  I  L  + ++GL   EA  RL Q GPN ++     S+   F +EL+E   L+L+V GV YA+ G V E+ T  V+I  +   E+  E R+KRA++ L+      A+V R  G   E+    +VPGD+++L+
Sbjct:   50 SVDETIARLQTNQTNGLTDPEAGRRLTQAGPNTLAVERPESFWHEFFEELHEPMVLMLLVTGVLYAIWGEVSEAITIFVIILTLNTVEVTNEQRSKRAIASLRKLAEPTASVRRG-GHFTELPVDQIVPGDVILLQ 184          
BLAST of EWM30025.1 vs. NCBI_GenBank
Match: gi|902955261|dbj|GAP15713.1| (cation transport ATPase [Longilinea arvoryzae])

HSP 1 Score: 84.3445 bits (207), Expect = 6.198e-15
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 0
Query:  120 SLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255
            S+D  I  L  + ++GL   EA  RL Q GPN ++     S+   F +EL+E   L+L+V GV YA+ G V E+ T  V+I  +   E+  E R+KRA++ L+      A+V R  G   E+    +VPGD+++L+
Sbjct:   16 SVDETIARLQTNQTNGLTDPEAGRRLTQAGPNTLAVERPESFWHEFFEELHEPMVLMLLVTGVLYAIWGEVSEAITIFVIILTLNTVEVTNEQRSKRAIASLRKLAEPTASVRRG-GHFTELPVDQIVPGDVILLQ 150          
The following BLAST results are available for this feature:
BLAST of EWM30025.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112651|gb|EWM30025.1|0.000e+0100.00cation-transporting atpase [Nannochloropsis gadita... [more]
gi|553183367|ref|XP_005853886.1|2.149e-12597.35hypothetical protein NGA_0429700, partial [Nannoch... [more]
gi|1026776344|gb|OAE35074.1|1.440e-2537.32hypothetical protein AXG93_763s1070 [Marchantia po... [more]
gi|971511410|dbj|GAQ86811.1|3.276e-2151.30p-type atpase [Klebsormidium nitens][more]
gi|504217725|ref|WP_014404827.1|1.068e-1542.28ATPase [Methanocella conradii] >gi|379320036|gb|AF... [more]
gi|282157791|dbj|BAI62879.1|2.397e-1541.67cation-transporting ATPase [Methanocella paludicol... [more]
gi|1175322479|ref|WP_081870272.1|3.052e-1533.59hypothetical protein [Lachnoclostridium phytoferme... [more]
gi|938509518|gb|KPQ42589.1|3.838e-1536.89cation-transporting ATPase [Candidatus Methanopere... [more]
gi|1180000322|ref|WP_083522676.1|5.587e-1536.03hypothetical protein [Longilinea arvoryzae][more]
gi|902955261|dbj|GAP15713.1|6.198e-1536.03cation transport ATPase [Longilinea arvoryzae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna642rna642Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications