EWM30037.1, cds638 (CDS) Nannochloropsis gaditana

Overview
NameEWM30037.1
Unique Namecds638
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:61694..61923 -
Alignment locationCM002456.1:61314..61511 -
Alignment locationCM002456.1:61147..61218 -
Alignment locationCM002456.1:60756..60909 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30037.1
ProductNuclear pore localization protein NPL4
Orig transcript idgnl|cribi|Naga_100179g10.5425.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:61694..61923 -
CM002456.1supercontigCM002456.1:61314..61511 -
CM002456.1supercontigCM002456.1:61147..61218 -
CM002456.1supercontigCM002456.1:60756..60909 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007717NPL4
Homology
[Close]
BLAST of EWM30037.1 vs. NCBI_GenBank
Match: gi|585112665|gb|EWM30037.1| (Nuclear pore localization protein NPL4 [Nannochloropsis gaditana])

HSP 1 Score: 436.032 bits (1120), Expect = 1.451e-154
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 
Query:    1 MMIHVNITPQIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGAGALLSTTSDVFVSGKTRREVDAALFTLPLAITPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLSKYLRSDDLAKLSSAIVSLGEKKKRTKEKKGVASPTVPPAVRALLEALCDEA 217
            MMIHVNITPQIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGAGALLSTTSDVFVSGKTRREVDAALFTLPLAITPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLSKYLRSDDLAKLSSAIVSLGEKKKRTKEKKGVASPTVPPAVRALLEALCDEA
Sbjct:    1 MMIHVNITPQIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGAGALLSTTSDVFVSGKTRREVDAALFTLPLAITPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLSKYLRSDDLAKLSSAIVSLGEKKKRTKEKKGVASPTVPPAVRALLEALCDEA 217
[Close]
BLAST of EWM30037.1 vs. NCBI_GenBank
Match: gi|553189578|ref|XP_005855030.1| (hypothetical protein NGA_0415200, partial [Nannochloropsis gaditana CCMP526] >gi|422294028|gb|EKU21328.1| hypothetical protein NGA_0415200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 282.722 bits (722), Expect = 2.268e-93
Identity = 149/204 (73.04%), Postives = 150/204 (73.53%), Query Frame = 0 
Query:   10 QIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGAGAL--------------------------------------------LSTTSDVFVSGKTRREVDAALFTLPLAITPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLSKYL 169
            QIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGG G                                                  +DVFVSGKTRREVDAALFTLPLAITPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLS   
Sbjct:   57 QIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGGGGFAVHDEVRGWGGREGGREEGRDNGREEEGGEGGGQRRLTTGERESCGDITDVFVSGKTRREVDAALFTLPLAITPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLSNVF 260
The following BLAST results are available for this feature:
BLAST of EWM30037.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112665|gb|EWM30037.1|1.451e-154100.00Nuclear pore localization protein NPL4 [Nannochlor... [more]
gi|553189578|ref|XP_005855030.1|2.268e-9373.04hypothetical protein NGA_0415200, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna638rna638Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications