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Properties
| Property Name | Value |
|---|
| Product | Nuclear pore localization protein NPL4 |
| Orig transcript id | gnl|cribi|Naga_100179g10.5425.mrna |
| Orig protein id | gnl|cribi|Naga_100179g10.5425 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:60756..61923 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna638 ID=rna638|Name=rna638|organism=Nannochloropsis gaditana|type=mRNA|length=3240bp
TTTTACAGTGCATCTTGGAGCTTGTTGGTGAATCGTCGAGGATTAAATAA
TCATTAAGGCTCAAGAGCACCACTGAGGTGGTAGTCCTAGCTAGCTGGTA
GTATCAGGCCAAGTGAAAGCTCAATCCACACGAGACCCGAACCCCACCCG
GCACGTCAACGCATTTTCCACCAACGTTTTGCGCGTAGAGCATGCGCTCT
CTGCACACGTGCCTAGCTTCCTTCCTCTCAGCCGCTTTAATTACGACGAT
GCTTTCTCTCGTGCTCCTGACCGCAGCTCGACGCGGTACGACCGCGGCTG
CCCTGAATAAACCTTCACGCACAACTGCCTTTTTCCCTACTATCGCGCGG
TACTTCTACAACATTCCGCAACCGTCGTGTCCATTTCCTGTACAAGGACC
CCCTGGGACAACTTCCACCTTCCAATCTCACCGGCGCCAGGGCAGGTTTC
AGGTCCTAGCCTCCGTCAAGGTTCCTCAAGATGTAGCGCGAGGAAAAAGT
ACATTGTCTACCTCCTCCCTGTCGGGGGTCTCACCGGCAGCACCAGCCAT
TGTAAGAGTCTTGGACGACGGGATCAAAAAGCCTGCACGAGACGACCGGC
AGTACAGGATGATCTGGCTCAAGAACGGAATGCAGGTCCTCCTTACCTCG
GACCCAACGACGGACGTCGCTTCCGCTTCGATGAACATCCATGCGGGCCA
CTTCCAAGACCCGGAGGCCTTCGCCGGCCTGGCGCATTTCCACGAGCACA
TGTACGGCGCTTTGACGATGCCAATTACGACAGTAATGATGATGCTCTAC
CTCTCGCTTCTAGATGGACCATGAAAATTTTGTTTTCCTCCGCAAAGCTA
TGGGATTGTACTCGATGAGCCACGTTTAAAGTGTACGAGAGTATAAATCG
GACGACCCTGCTCTGTTCATATCAGGGCATCCCTTCTCACTGCTCCCTTC
TCCGGCCCCTATTTCCCCCTGATCTTTCCTCCTCTAGGCTCTTCTTGGGT
ACGGACCGCTACCCAAAGGAGGGGGAATACGAACAGTTTTTGAACCAGAA
CGGCGGGAGCAGTAACGCATACACTGCTATGGAGGACACCAATTATTACT
TCTCGATCAAATGGGAGGAATTGCAGGGTGCCTTGGACCGATTCTCGGCG
TTTTTCACCTGTCCGCGTTTCGACAACGCCTCCACCGAGAGGGAAATGAA
AGCGGTGGATTCCGAGCACTCCAATAATCTGCAGGATGATGGATGGCGTC
TCTTCCAGCTGCAGAAGTCCACCGCCCACCCCGAGCATCCTTTCCACAAG
TTCGGATCAGGGAACCGGAAGACGCTTCTTCCCCCCCCAGAAAAGGGTGG
GATGGAGGCAACGCGCGAAGCCCTCCTTGCTTTCCATACCACGTACTACT
CGGCGGACATCATGAAGCTCGCCATTGTCGGCCGGGAGGATTTGGACACG
TTGCAGGAGTGGGCTGTACAGTTGTTTGCTGGCGTGAGAACGACCGGGCA
GCCCTCGCATTTCCCATACCCGGTGGAAGCCTGGGATCCGAGCAGGCTCG
GGACCCGGCTGGACGTGGTGCCGGTGAGGGAAATGCGCCGGCTCTCATTG
GCCTGGCCCCTGCCCCACAATTGGGAGAAGCAACGGGCACTTCAGTCCTC
AAAGCCGGCCCGCTACCTCGCCCATCTACTCGGTCACGAGGGGAAAGGCT
CCCTCCACTCCTACCTGAACTCCCAGGGGTGGATCGAGAGCATTTCTGCT
GGATCCTCCGTGAAGACTGCGGACATGGATATGTTCAAGGTCAGCCTCTC
CTTGACGCAAGCGGGGATGGAGCACATCGAGGAGATCGTTGGTCTCGTGT
ATCAGTACCTGAAGCTCCTGCGCTCGTCACCAGTCGACCGGAAAGTCTTT
GAGGAGCTGAAGACGATGAGCGAAATAAAATTCTTGTTCCGCGAGAAGGA
AAACGCCGTCGACTTTGCCAGCGGCATCTCTTCCATGATGCACGAATACC
CCCCCGAGAACATCCTGTGGGGACCCTACGCCCTGGATTGGGACGAGCAG
GCCGTGAGAGACTACCTCTCGCTCCTCACTCCAGAGCGTATGCACTTGAC
CGTCGTATCTAAGGCATTCGAAGAGGAGGCGCAGAAGGAGGCATGGGCCA
AGGAGAAATGGTACGGGACATTGCACAAATTGGAAAAACTGCCTGAGGCA
AAAGTAGCCGCCTGGTCGAATCCGCCAGAAATTCATCCAATGCTCAGCCT
TCCTTCTCCCAATGAGTTCCTCCCCACGGACTTCTCGCTCATATGCGAGC
AGCCCGCATACAAGAGCCTCGCCCCGGACGACCCCGTCCATCCCTTTCCC
CCCTCTCTCCTCTTTCCTTCCTCCGCGCAAGCCTTGCCTGCTTCCCTGCC
TGCTTCCTCCCCTGAACGGGGGGTGAAGGTCTTCCACAAGCTCGACACAA
CATTCAAAGTACCCAAGGTCCAATTTTTTGCGCATCTGCTCAGCCGACAG
ATCTACTCGTCTCCTCCCTCGGTGGTCCTCCACCGTTTGTACAACATGCT
CCTGCGTGATGAACTCAACGAATTCGCCTACGAAGCCGCCATGGCCGGCC
TGTCTTATTCTGTGACCACTCGCACCACTGGCTTGAGCGTCAAGGTGTCT
GGCTACTCGCACAAGCTCCCCGTGCTCCTCAAGAAAGTGGCGGGCAAAGC
CAAAGGTTTGCTGCAGGAGATCAAAGACAAGGGCGCGAACGACCCGGAGA
TTCAACAGAAGTTCAACAAGCACCGCCTCACCCTTCTACGAGAGTACATG
AATTTTGATCGAGAAGCGCCGTACGAGCGCGCTCTGTACAATACACGTCA
AGTTTTAGACGGCCAGGCTTGGCACCTTGCCCAGTACATCCAAGTCCTCA
ACGACCACTCCACTTGCAACGTGCAGGCGATGACTGACGTTGTCGAGGAG
GGCATGGCTCGTCTGGATTGCGATGCCTATGCGCACGGGAACGTGAACGC
TGAGGAGGCTCTGAGTTATTTCCAAACCCTCAAAGATGTACGTTTGATGA
ATTTTGAGGAGAAGGAGTTCTGCGTTGTGTAGGGAGAGCGAGAGGACAGT
TTGATGAGGCTTGTTTCTCCTCAATTGCTTCGATACACAATGGCATGAAG
AGGAGTATCAGAATGTAGCAAGGCGAAGAAGAGGGAGACACACTGACCTA
TCGCCACGTTGTCATGGTCTTTCCTCTCTCCCCTTCCTCC back to topprotein sequence of rna638 >rna638-protein ID=rna638-protein|Name=rna638|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MMIHVNITPQIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQ
VSPQGVQMVWDGLIQDGGAGALLSTTSDVFVSGKTRREVDAALFTLPLAI
TPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDK
KLLSKLADFHLLIYLSKYLRSDDLAKLSSAIVSLGEKKKRTKEKKGVASP
TVPPAVRALLEALCDEA back to topmRNA from alignment at CM002456.1:60756..61923- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna638 ID=rna638|Name=rna638|organism=Nannochloropsis gaditana|type=mRNA|length=1168bp|location=Sequence derived from alignment at CM002456.1:60756..61923- (Nannochloropsis gaditana)
ATGATGATCCATGTAAATATCACCCCACAGATCGAAAGCATGAAAGCCTC
CGTGTCCTCCTCCCCGCCCTCCCTCGGCTCCGCCTTCCTGACCCTGGCTG
TCAACACCTCCGCAGCCTTCGATACACAGCATCCTGTCGAGGCATTTCAG
GTCTCACCACAGGGAGTGCAGATGGTCTGGGATGGATTGATTCAGGACGG
AGGGGCGGGGGCTTTGCTGTCCACGACGAGGTTAGGGGTGGGGAGGGAGA
GAGGGAGGAAGGGAGGAAGGGAGGGACAACGAAGGGAGGAGGAAGGGGGG
GAGGGAGGGGGGCAACGCAGACTGACGACGGGAGAGAGGGAGTCCTGTGG
TGACATTACGTCATTTTTTCCGTGTATGTCCCCCTCATTCGTATCCCTCC
TTGCGACTCCAGCGACGTCTTTGTCTCGGGGAAAACACGGCGGGAGGTAG
ATGCGGCCCTCTTCACCCTCCCTCTAGCCATCACCCCTGACTCCACCCCG
TCCTCCCTGCCGCCCTCCATCGCATCCTCCATTGTGCGAAACGCCTTGCC
GGCTCTGAAGGACGACGAGGATCTTCGAGCGGCCCTCCTGGGGCGAGAAA
GAGGGAATAGGTAGGATAGGAAGGCAGACGGGAGGGGCAGCGAGGAAGGA
GGGAGGGAGGGCGATCGCATCTGAGATTTTATTTCCTTGCCTTTGGTCCA
CACAGATGGCTGGAGACGCGCGACAAGAAGCTTCTGAGCAAGCTAGCGGA
CTTCCATCTTCTAATCTACCTATCCAAGTACGTGAAGCTCCCTGTCTCTC
GTCCCCCTGTTCCTCTACCTCTACTCGCTTCCCTTCTTTTCACTACGTTC
TTCTTTCTCACTGTGCTTACCCTTCTTCCCAATCTCATCGGTGTTCTCCC
CTTGTGATGATGCGCTCGTTTGTACGAGCAACGTTATGTATTCGCCTCAT
CCTTCCGATGTTGAAACCCGCTGAACTATCTCGCCTTCCCGCCATTCCCA
TCCCTTTATTGCAGGTACCTTAGGTCAGATGACCTAGCGAAGCTATCCTC
TGCCATTGTGTCTTTGGGTGAGAAGAAAAAAAGAACCAAAGAAAAGAAGG
GGGTAGCAAGTCCAACCGTCCCTCCCGCGGTCCGCGCGCTTTTGGAGGCG
TTGTGTGACGAGGCATAG back to topCoding sequence (CDS) from alignment at CM002456.1:60756..61923- >rna638 ID=rna638|Name=rna638|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at CM002456.1:60756..61923- (Nannochloropsis gaditana)
GTACCTTAGGTCAGATGACCTAGCGAAGCTATCCTCTGCCATTGTGTCTT
TGGGTGAGAAGAAAAAAAGAACCAAAGAAAAGAAGGGGGTAGCAAGTCCA
ACCGTCCCTCCCGCGGTCCGCGCGCTTTTGGAGGCGTTGTGTGACGAGGC
ATAGATGGCTGGAGACGCGCGACAAGAAGCTTCTGAGCAAGCTAGCGGAC
TTCCATCTTCTAATCTACCTATCCAACGACGTCTTTGTCTCGGGGAAAAC
ACGGCGGGAGGTAGATGCGGCCCTCTTCACCCTCCCTCTAGCCATCACCC
CTGACTCCACCCCGTCCTCCCTGCCGCCCTCCATCGCATCCTCCATTGTG
CGAAACGCCTTGCCGGCTCTGAAGGACGACGAGGATCTTCGAGCGGCCCT
CCTGGGGCGAGAAAGAGGGAATAGATGATGATCCATGTAAATATCACCCC
ACAGATCGAAAGCATGAAAGCCTCCGTGTCCTCCTCCCCGCCCTCCCTCG
GCTCCGCCTTCCTGACCCTGGCTGTCAACACCTCCGCAGCCTTCGATACA
CAGCATCCTGTCGAGGCATTTCAGGTCTCACCACAGGGAGTGCAGATGGT
CTGGGATGGATTGATTCAGGACGGAGGGGCGGGGGCTTTGCTGTCCACGA
CGAGGTACCTTAGGTCAGATGACCTAGCGAAGCTATCCTCTGCCATTGTG
TCTTTGGGTGAGAAGAAAAAAAGAACCAAAGAAAAGAAGGGGGTAGCAAG
TCCAACCGTCCCTCCCGCGGTCCGCGCGCTTTTGGAGGCGTTGTGTGACG
AGGCATAGATGGCTGGAGACGCGCGACAAGAAGCTTCTGAGCAAGCTAGC
GGACTTCCATCTTCTAATCTACCTATCCAACGACGTCTTTGTCTCGGGGA
AAACACGGCGGGAGGTAGATGCGGCCCTCTTCACCCTCCCTCTAGCCATC
ACCCCTGACTCCACCCCGTCCTCCCTGCCGCCCTCCATCGCATCCTCCAT
TGTGCGAAACGCCTTGCCGGCTCTGAAGGACGACGAGGATCTTCGAGCGG
CCCTCCTGGGGCGAGAAAGAGGGAATAGATGATGATCCATGTAAATATCA
CCCCACAGATCGAAAGCATGAAAGCCTCCGTGTCCTCCTCCCCGCCCTCC
CTCGGCTCCGCCTTCCTGACCCTGGCTGTCAACACCTCCGCAGCCTTCGA
TACACAGCATCCTGTCGAGGCATTTCAGGTCTCACCACAGGGAGTGCAGA
TGGTCTGGGATGGATTGATTCAGGACGGAGGGGCGGGGGCTTTGCTGTCC
ACGACGAGGTACCTTAGGTCAGATGACCTAGCGAAGCTATCCTCTGCCAT
TGTGTCTTTGGGTGAGAAGAAAAAAAGAACCAAAGAAAAGAAGGGGGTAG
CAAGTCCAACCGTCCCTCCCGCGGTCCGCGCGCTTTTGGAGGCGTTGTGT
GACGAGGCATAGATGGCTGGAGACGCGCGACAAGAAGCTTCTGAGCAAGC
TAGCGGACTTCCATCTTCTAATCTACCTATCCAACGACGTCTTTGTCTCG
GGGAAAACACGGCGGGAGGTAGATGCGGCCCTCTTCACCCTCCCTCTAGC
CATCACCCCTGACTCCACCCCGTCCTCCCTGCCGCCCTCCATCGCATCCT
CCATTGTGCGAAACGCCTTGCCGGCTCTGAAGGACGACGAGGATCTTCGA
GCGGCCCTCCTGGGGCGAGAAAGAGGGAATAGATGATGATCCATGTAAAT
ATCACCCCACAGATCGAAAGCATGAAAGCCTCCGTGTCCTCCTCCCCGCC
CTCCCTCGGCTCCGCCTTCCTGACCCTGGCTGTCAACACCTCCGCAGCCT
TCGATACACAGCATCCTGTCGAGGCATTTCAGGTCTCACCACAGGGAGTG
CAGATGGTCTGGGATGGATTGATTCAGGACGGAGGGGCGGGGGCTTTGCT
GTCCACGACGAGGTACCTTAGGTCAGATGACCTAGCGAAGCTATCCTCTG
CCATTGTGTCTTTGGGTGAGAAGAAAAAAAGAACCAAAGAAAAGAAGGGG
GTAGCAAGTCCAACCGTCCCTCCCGCGGTCCGCGCGCTTTTGGAGGCGTT
GTGTGACGAGGCATAGATGGCTGGAGACGCGCGACAAGAAGCTTCTGAGC
AAGCTAGCGGACTTCCATCTTCTAATCTACCTATCCAACGACGTCTTTGT
CTCGGGGAAAACACGGCGGGAGGTAGATGCGGCCCTCTTCACCCTCCCTC
TAGCCATCACCCCTGACTCCACCCCGTCCTCCCTGCCGCCCTCCATCGCA
TCCTCCATTGTGCGAAACGCCTTGCCGGCTCTGAAGGACGACGAGGATCT
TCGAGCGGCCCTCCTGGGGCGAGAAAGAGGGAATAGATGATGATCCATGT
AAATATCACCCCACAGATCGAAAGCATGAAAGCCTCCGTGTCCTCCTCCC
CGCCCTCCCTCGGCTCCGCCTTCCTGACCCTGGCTGTCAACACCTCCGCA
GCCTTCGATACACAGCATCCTGTCGAGGCATTTCAGGTCTCACCACAGGG
AGTGCAGATGGTCTGGGATGGATTGATTCAGGACGGAGGGGCGGGGGCTT
TGCTGTCCACGACGAG back to top
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