EWM30036.1, cds629 (CDS) Nannochloropsis gaditana

Overview
NameEWM30036.1
Unique Namecds629
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:31364..31388 +
Alignment locationCM002456.1:31468..32066 +
Alignment locationCM002456.1:32136..32166 +
Alignment locationCM002456.1:32210..32280 +
Alignment locationCM002456.1:32345..32599 +
Alignment locationCM002456.1:32644..32790 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30036.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100179g1.5424.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:31364..31388 +
CM002456.1supercontigCM002456.1:31468..32066 +
CM002456.1supercontigCM002456.1:32136..32166 +
CM002456.1supercontigCM002456.1:32210..32280 +
CM002456.1supercontigCM002456.1:32345..32599 +
CM002456.1supercontigCM002456.1:32644..32790 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585112664|gb|EWM30036.1| (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
Query:    1 MAWLKRAQLVNVSIFSITTMRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLTRGLILISPVISIRGVPLSVCFLCVSVFLYYFSREAYECLPVLTSIRAPVFHVLAKTCRVHCKPSRMSDWSTLKYDFWLPSCLLVEFKKTCTCMIIRMGKRKFLVEGMQVFNFASKCRLILSRPNIFFDYPKLPCTIMMQELRCLHTGFLFAYLFVCRIRCHLSYS 375
            MAWLKRAQLVNVSIFSITTMRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLTRGLILISPVISIRGVPLSVCFLCVSVFLYYFSREAYECLPVLTSIRAPVFHVLAKTCRVHCKPSRMSDWSTLKYDFWLPSCLLVEFKKTCTCMIIRMGKRKFLVEGMQVFNFASKCRLILSRPNIFFDYPKLPCTIMMQELRCLHTGFLFAYLFVCRIRCHLSYS
Sbjct:    1 MAWLKRAQLVNVSIFSITTMRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLTRGLILISPVISIRGVPLSVCFLCVSVFLYYFSREAYECLPVLTSIRAPVFHVLAKTCRVHCKPSRMSDWSTLKYDFWLPSCLLVEFKKTCTCMIIRMGKRKFLVEGMQVFNFASKCRLILSRPNIFFDYPKLPCTIMMQELRCLHTGFLFAYLFVCRIRCHLSYS 375          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|553189589|ref|XP_005855033.1| (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >gi|422294031|gb|EKU21331.1| hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 389.037 bits (998), Expect = 1.267e-133
Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 0
Query:   20 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLT 210
            MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGA VQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTP+T
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGANVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPVT 191          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585112674|gb|EWM30045.1| (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 275.018 bits (702), Expect = 8.226e-89
Identity = 140/199 (70.35%), Postives = 159/199 (79.90%), Query Frame = 0
Query:   20 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLTRGLILISP 218
            MRR   LLALG+TLVMTAGQ+ FTLKNVKV ++SKTARDQWSMKGNLD+P M VVP IGQ GLTV L D++L  L STAFAA++CKL RNGRGV CK  GARVSIK +RRPKGA V++SN NSTGGYY ASGMFRRLQFLQDP+V PLTV + V S   P  A+VS+CSE+ KGAGR T+ITCTPGP P+T      SP
Sbjct:    1 MRRILSLLALGVTLVMTAGQE-FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLP--AIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAASP 196          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585099510|gb|EWM20135.1| (hypothetical protein Naga_101626g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 251.136 bits (640), Expect = 1.742e-79
Identity = 128/185 (69.19%), Postives = 149/185 (80.54%), Query Frame = 0
Query:   20 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTP 204
            MR    LLALGITLVMTAGQ+ FTLKN+KV  + KTARDQWSMKGNLD+PTM VVP+IGQ GLTV L D +L+ L S AFAA++CKL RN RGVSCK+ GARV IK +RRPK A V++S+YNSTGGYY+ASGMFRRLQFLQD +V PLTV L V +   P  A+VS+CSE+ K AGR T+ITCTP
Sbjct:    1 MRCILSLLALGITLVMTAGQE-FTLKNIKVAGRFKTARDQWSMKGNLDNPTMNVVPVIGQSGLTVNLLDASLSPLASAAFAATNCKLLRNARGVSCKSMGARVYIKRTRRPKAAKVKSSSYNSTGGYYAASGMFRRLQFLQDTVVTPLTVQLVVGTTTLP--AIVSTCSERTKSAGRITKITCTP 182          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585099453|gb|EWM20105.1| (hypothetical protein Naga_101776g1 [Nannochloropsis gaditana])

HSP 1 Score: 242.276 bits (617), Expect = 1.278e-75
Identity = 131/185 (70.81%), Postives = 150/185 (81.08%), Query Frame = 0
Query:    9 LVNVSIFSITTMRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKG 193
            + N SI SI TMRR   LLALG+TLVMTAGQ+ FTLKNVKV ++SKTARDQWSMKGNLD+P M VVP IGQ GLTV L D++L  L STAFAA++CKL RNGRGVSCK  GARVSIK +RRPKGA V++SN NSTGGYY ASGMFRRLQFLQDP+V P+TV + V S   P  A+VS+CSE+ KG
Sbjct:   26 MFNSSILSIATMRRILSLLALGVTLVMTAGQE-FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVSCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPVTVQVKVGSTTLP--AIVSTCSERTKG 207          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585108538|gb|EWM26485.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 188.348 bits (477), Expect = 3.027e-54
Identity = 101/194 (52.06%), Postives = 129/194 (66.49%), Query Frame = 0
Query:   20 MRRAFFLLALGIT----LVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPK---GAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGP 206
            MR A  LL LG+T    LV TAGQDL  LK+++ +D+S T +D W MKGN++DP++T+VP IGQ GLTVELQD A   L + AFAASDC++  +GR  +CK RGARVSIK SRRPK      V   +YNSTGGYYS +G FR L FL++P+V PLT  L +       S  ++SC +  + +GR T   C PGP
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDL-NLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGSVL--SDTLTSCYDLARKSGRNTISHCEPGP 191          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585108537|gb|EWM26484.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 188.734 bits (478), Expect = 9.795e-54
Identity = 101/194 (52.06%), Postives = 129/194 (66.49%), Query Frame = 0
Query:   20 MRRAFFLLALGIT----LVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPK---GAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGP 206
            MR A  LL LG+T    LV TAGQDL  LK+++ +D+S T +D W MKGN++DP++T+VP IGQ GLTVELQD A   L + AFAASDC++  +GR  +CK RGARVSIK SRRPK      V   +YNSTGGYYS +G FR L FL++P+V PLT  L +       S  ++SC +  + +GR T   C PGP
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDL-NLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGSVL--SDTLTSCYDLARKSGRNTISHCEPGP 191          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585100200|gb|EWM20521.1| (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 185.267 bits (469), Expect = 2.599e-53
Identity = 102/194 (52.58%), Postives = 127/194 (65.46%), Query Frame = 0
Query:   20 MRRAFFLLALGITL----VMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPK---GAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGP 206
            MR    LLALGITL    V TAGQDL  LK+++ +D+S T +D W MKGN++DP++T VP IGQ GLTVELQD A   L + AFAASDC++  +GR  +CK RGARVSIK SRRPK      V   +YNSTGGYYS +G FR L FL++P+V PLT  L V       S  + SC +  + + R+T   C PGP
Sbjct:    1 MRSPLSLLALGITLGSTLVTTAGQDL-NLKSIRAVDRSVTNKDTWKMKGNINDPSLTFVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRAACKIRGARVSIKRSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRVNGSVL--SDTLISCYDLARKSARSTISQCEPGP 191          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585109630|gb|EWM27399.1| (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 179.489 bits (454), Expect = 1.218e-50
Identity = 99/194 (51.03%), Postives = 125/194 (64.43%), Query Frame = 0
Query:   20 MRRAFFLLALGITL----VMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPK---GAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGP 206
            MR    LLALGITL    V TAGQDL  LK+++ +D+S T +D W MKG+++DP++T+V  IGQ+GLTVELQD A   L +  FAASDC++  +GR  +CK RGARVSIK SRRPK      V   +YNSTGGYYS +G FR L FL++P+V PLT  L V       S  ++ C    +  GR T   C PGP
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDL-NLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIKTSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTVDESVL--SDTLTLCYNLPRKNGRNTISHCEPGP 191          
BLAST of EWM30036.1 vs. NCBI_GenBank
Match: gi|585109627|gb|EWM27397.1| (hypothetical protein Naga_101181g1 [Nannochloropsis gaditana])

HSP 1 Score: 175.637 bits (444), Expect = 1.002e-47
Identity = 95/194 (48.97%), Postives = 122/194 (62.89%), Query Frame = 0
Query:   20 MRRAFFLLALGITL----VMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPK---GAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGP 206
            MR    LLALGITL    V T GQ L  LK+++ +D+S T +D W MKG+++DP++T+VP IGQ+GLTVELQD     L +  FAA DC++  +G+  +CK RGARV IK SRRPK      V    YNSTGGYYS +G FRRL FL++P+V PLT  L V       S  ++SC +  +  GR     C PGP
Sbjct:   69 MRSTLSLLALGITLGSTLVTTTGQSL-NLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVPTIGQKGLTVELQDATTDLLNTVTFAARDCRVPAHGKRAACKIRGARVFIKTSRRPKINTPKTVHAKRYNSTGGYYSVTGTFRRLTFLENPVVSPLTAALTVNESVL--SDTLTSCYDLPRKNGRNPITHCEPGP 259          
The following BLAST results are available for this feature:
BLAST of EWM30036.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112664|gb|EWM30036.1|0.000e+0100.00hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
gi|553189589|ref|XP_005855033.1|1.267e-13398.95hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
gi|585112674|gb|EWM30045.1|8.226e-8970.35hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
gi|585099510|gb|EWM20135.1|1.742e-7969.19hypothetical protein Naga_101626g1, partial [Nanno... [more]
gi|585099453|gb|EWM20105.1|1.278e-7570.81hypothetical protein Naga_101776g1 [Nannochloropsi... [more]
gi|585108538|gb|EWM26485.1|3.027e-5452.06Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585108537|gb|EWM26484.1|9.795e-5452.06Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585100200|gb|EWM20521.1|2.599e-5352.58hypothetical protein Naga_100335g8, partial [Nanno... [more]
gi|585109630|gb|EWM27399.1|1.218e-5051.03hypothetical protein Naga_100212g1, partial [Nanno... [more]
gi|585109627|gb|EWM27397.1|1.002e-4748.97hypothetical protein Naga_101181g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna629rna629Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications