EWM30096.1, cds577 (CDS) Nannochloropsis gaditana

Overview
NameEWM30096.1
Unique Namecds577
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1439249..1440577 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30096.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100193g4.5879.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1439249..1440577 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|553192721|ref|XP_005855631.1| (hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526] >gi|422293420|gb|EKU20720.1| hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 924.465 bits (2388), Expect = 0.000e+0
Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 0
Query:    1 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 442
            MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN
Sbjct:  161 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 602          
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585112738|gb|EWM30096.1| (hypothetical protein Naga_100193g4 [Nannochloropsis gaditana])

HSP 1 Score: 917.916 bits (2371), Expect = 0.000e+0
Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 0
Query:    1 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 442
            MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN
Sbjct:    1 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 442          
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585102674|gb|EWM22223.1| (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana])

HSP 1 Score: 113.235 bits (282), Expect = 9.431e-24
Identity = 114/421 (27.08%), Postives = 182/421 (43.23%), Query Frame = 0
Query:    8 NIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDS----DRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKP--KKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWN----RSYSFVAAED--PERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQ-----CADASALDA-CVDPDYLKNVMEDYYPRIQWYTCDQDG 410
            ++ R+ G +P   VRYFS QS +     P+++++DYEI+        NPFA       D+  G Y ++VT  GDQG  NEL             +  A +L+R Y  D   P    KTD         ++G   PP+V+ + F     + S  +  ++ T DQ   T   + I+  F   I      V   +N             AG  P           W    +  D    +  L+A +TGTLP +   L+T P +A++  ++ RY+S S+  L   GP + TL D+  + FY         WN    R Y  VAA D    + CG +     +FLST        Y  ++ R+++  +Q +R+ D +N    +      C   + + A C    +  +VM+++YP++ +Y C Q G
Sbjct:   78 DVIRIEGDYPF--VRYFSYQSYDPKSLDPVASVRDYEIK---SVRGVNPFATPGTTLGDK--GKYQVHVTLNGDQGYPNELPTIASG-----SNATGAFVLLRVYAYDKQSP---DKTD---------IWGAVAPPVVKYKLF-----NPSSGQGGLWYTLDQC--TPNNTKIASQFISTIATGYSRVLATENK------------AGANP--------CPTWNSRDQFLDGGGVQGNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNLRNSRQYKIVAAADLASAKRCG-HLTRDAMFLSTWGQTARVSYPALVLREIL--SQSSRIGDTANNTQSIHNIKQACESIAGVGAKCETSSFASSVMKNFYPKVTYYDCLQGG 444          
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585101524|gb|EWM21339.1| (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 110.923 bits (276), Expect = 1.276e-22
Identity = 111/415 (26.75%), Postives = 176/415 (42.41%), Query Frame = 0
Query:    6 EKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPF--AEDSDRPIGTYTINVTPRGDQGLKNELS-LCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCD---QTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPE--RTCGLYNASQELFLSTVLD---GKLQDYWGILDRQLIPKTQRTRLPDR--SNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCD 407
            E+ ++R+RG FP   VRYFS    +  +   IST+ D +I    P + +NPF   E ++  +GTY I V+  G +G  NE++ L P+S       S  A++  R    DP      S          +R +GY   P+VE    ++         W +   C    Q R+ +V   +   F    P             F L+  E          +  A    + W +  E+    KK  + R+TG LP T   LF D ++A+    D RY+SF+S   +   P+ +T+ D      Y    P G  W+R Y+ VA  D    + CGLYN ++++ L          L     I+ R L+P   + R      +N   R +C   +    C      K +++++YP +Q +TCD
Sbjct:  155 EEEVYRIRGKFPY--VRYFSFTVYDASLQ-SISTLHDTDIR---PSSGKNPFNDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALRPDST------SPYALLAFRLQLLDPRAGEDRSG--------KNREWGYVDMPLVEILNHRN-------GEWDIIRRCSDEFQARTEEVIENLDLTFNTWWPKNLQIGTECNATEFSLFDPEQNPIIRRGVAVRNANENYIFWCMPKEIG---KKDYIIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFTSADAIPLYPSYETIHDRDIFNHYS-TDPFGSDWDRMYNLVATSDVNLAKKCGLYNRAEDVLLQLTRSPTFTHLPHVPAIVMRHLLPGGGKERRGTEGVANVNLRNECESPTGKLLCDPARSAKVLLQEFYPLVQIWTCD 538          
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585109295|gb|EWM27118.1| (hypothetical protein Naga_100046g25 [Nannochloropsis gaditana])

HSP 1 Score: 108.227 bits (269), Expect = 1.472e-21
Identity = 112/444 (25.23%), Postives = 186/444 (41.89%), Query Frame = 0
Query:   12 VRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEI--EVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTD--PPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTR--STQVTSLISKHFYGMIPPFA--PPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSP-ELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLY-------NASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRL------------------------PDRSNGYARLQ----------CADASALDACVDPDYLKNVMEDYYPRIQWYT 405
            V  SFP    RY S Q+ ++       +++D +I  + + P    N  A       G YT+ +T RGDQ   NEL   P+S+   Q       +  R Y  +  + P  +     PP  +     +G+A PP +  ++            WR  P C   R    ++ + +S+ +    PPFA  P V  NK NN  ++L + T   G + + DA Y+ +VA    P  +++  +  L ARVTGTLP    +L+T P +AN  D DVRY+S S++          T+ D      Y+ + P G  W+R ++      P +    Y       N     + +++  G + +Y G+L RQ++ ++Q   L                        P      A ++          C    A   C  P+Y++  M  YYP+++++T
Sbjct:  176 VAESFPY--ARYCSYQTYDLRTLMSHQSLRDVDIVPDANGPNCYANLTAAQEGLRQGGYTLYMTARGDQNYTNELRALPDSIESGQFD-----LFFRIYVEEALQGPPQAPWGHLPPYGKDLAFEWGWAPPPRLYAKR-----AHLKDGEWREVPFCQYRRRKGFKLLAYLSEIWPAPSPPFAGHPAVAPNKANN--VFLPKYTDRQGKFASKDANYVASVA---EPRHVRNGSEAMLWARVTGTLPRVPGSLYTPPYVANATDYDVRYVSLSAVHRTIPFRNHATVADTQITEHYQKRLPPGVEWDRKFTIWVV--PPQVESAYPRQVMDENPVIMKWGASLFGGGIVEYTGLLYRQVMARSQVVGLEQGALSASGVVNIVPEACQSGQVGPHGEGADAAMKAGDPLEMEQFCCSTEAPMECFLPEYVRYRMGPYYPQVEYFT 600          
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585104143|gb|EWM23216.1| (hypothetical protein Naga_102281g1 [Nannochloropsis gaditana])

HSP 1 Score: 92.8189 bits (229), Expect = 8.973e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 0
Query:   78 QGLKNELSLCPESMTDRQC-RSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLIS 177
            QG  NEL+LCP+      C R +NAV++MRFYTSDPD P  +SKTD P S  N RLFGY  PP VE+R    W     R+RW++  TCDQ+R T+ T++  
Sbjct:   18 QGYPNELALCPDKFN---CPRRMNAVIIMRFYTSDPDLPEANSKTD-PLSANNPRLFGYEAPPTVEKRANNKW-----RERWKLIDTCDQSRPTRFTNVCC 109          
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|553186469|ref|XP_005854425.1| (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >gi|422294638|gb|EKU21938.1| hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.4925 bits (197), Expect = 1.205e-12
Identity = 54/186 (29.03%), Postives = 92/186 (49.46%), Query Frame = 0
Query:  237 KKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWN----RSYSFVAAED--PERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQ-----CADASALDA-CVDPDYLKNVMEDYYPRIQWYTCDQDG 410
            +  L+A +TGTLP +   L+T P +A++  ++ RY+S S+  L   GP + TL D+  + FY         WN    R Y  VAA D    + CG +     +FLST        Y  ++ R+++  +Q +R+ D +N    +      C   + + A C    +  +VM+++YP++ +Y C Q G
Sbjct:  364 QGNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNLRNSRQYKIVAAADLASAKRCG-HLTRDAMFLSTWGQTARVSYPALVLREIL--SQSSRIGDTANNTQSIHNIKQACESIAGVGAKCETSSFASSVMKNFYPKVTYYDCLQGG 546          
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585105664|gb|EWM24273.1| (protein of unknown function DUF1214 [Nannochloropsis gaditana])

HSP 1 Score: 72.7886 bits (177), Expect = 4.056e-10
Identity = 92/325 (28.31%), Postives = 143/325 (44.00%), Query Frame = 0
Query:   22 RYFSLQSNNVDVGFPISTIKDYEI-EVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFY-TSDPDRP--PVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFY--------GMIPP------FAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQ-QPEGEAWNRSYSF----VAAEDPERT 323
            R+FS Q+ ++D       ++D EI   + P    N  A       G YT+ +TP G +G  NEL    +++   Q +S   V++ R Y   D   P  P +  +   A QP    +G+  PP V  R+         +  WR  P+C  TR      L SK +          + PP      F  P+R    NNF  +L  D     ++ ++D   L++ A   + ++ D     + ARV   LP T  +L++ P IAN  D DVRY+SF+S +      T +TL D +  + YE + +   E W+  +S     V A  PE+ 
Sbjct:  108 RFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNEL----QTLKYGQ-KSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQR--WGWTPPPRVSVRR------TMRQGSWREIPSC-VTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLR---QNNF--HLPHDH----LFSSVDTRTLVSAAAIPAVDVGD-----VWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQA 404          
The following BLAST results are available for this feature:
BLAST of EWM30096.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|553192721|ref|XP_005855631.1|0.000e+0100.00hypothetical protein NGA_0673800 [Nannochloropsis ... [more]
gi|585112738|gb|EWM30096.1|0.000e+0100.00hypothetical protein Naga_100193g4 [Nannochloropsi... [more]
gi|585102674|gb|EWM22223.1|9.431e-2427.08hypothetical protein Naga_100312g6 [Nannochloropsi... [more]
gi|585101524|gb|EWM21339.1|1.276e-2226.75hypothetical protein Naga_100075g21 [Nannochlorops... [more]
gi|585109295|gb|EWM27118.1|1.472e-2125.23hypothetical protein Naga_100046g25 [Nannochlorops... [more]
gi|585104143|gb|EWM23216.1|8.973e-1950.50hypothetical protein Naga_102281g1 [Nannochloropsi... [more]
gi|553186469|ref|XP_005854425.1|1.205e-1229.03hypothetical protein NGA_0235800 [Nannochloropsis ... [more]
gi|585105664|gb|EWM24273.1|4.056e-1028.31protein of unknown function DUF1214 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna577rna577Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications