EWM30096.1, cds577 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|553192721|ref|XP_005855631.1| (hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526] >gi|422293420|gb|EKU20720.1| hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 924.465 bits (2388), Expect = 0.000e+0 Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 0
Query: 1 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 442
MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN
Sbjct: 161 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 602
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585112738|gb|EWM30096.1| (hypothetical protein Naga_100193g4 [Nannochloropsis gaditana]) HSP 1 Score: 917.916 bits (2371), Expect = 0.000e+0 Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 0
Query: 1 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 442
MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN
Sbjct: 1 MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN 442
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585102674|gb|EWM22223.1| (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana]) HSP 1 Score: 113.235 bits (282), Expect = 9.431e-24 Identity = 114/421 (27.08%), Postives = 182/421 (43.23%), Query Frame = 0
Query: 8 NIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPFAEDS----DRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKP--KKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWN----RSYSFVAAED--PERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQ-----CADASALDA-CVDPDYLKNVMEDYYPRIQWYTCDQDG 410
++ R+ G +P VRYFS QS + P+++++DYEI+ NPFA D+ G Y ++VT GDQG NEL + A +L+R Y D P KTD ++G PP+V+ + F + S + ++ T DQ T + I+ F I V +N AG P W + D + L+A +TGTLP + L+T P +A++ ++ RY+S S+ L GP + TL D+ + FY WN R Y VAA D + CG + +FLST Y ++ R+++ +Q +R+ D +N + C + + A C + +VM+++YP++ +Y C Q G
Sbjct: 78 DVIRIEGDYPF--VRYFSYQSYDPKSLDPVASVRDYEIK---SVRGVNPFATPGTTLGDK--GKYQVHVTLNGDQGYPNELPTIASG-----SNATGAFVLLRVYAYDKQSP---DKTD---------IWGAVAPPVVKYKLF-----NPSSGQGGLWYTLDQC--TPNNTKIASQFISTIATGYSRVLATENK------------AGANP--------CPTWNSRDQFLDGGGVQGNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNLRNSRQYKIVAAADLASAKRCG-HLTRDAMFLSTWGQTARVSYPALVLREIL--SQSSRIGDTANNTQSIHNIKQACESIAGVGAKCETSSFASSVMKNFYPKVTYYDCLQGG 444
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585101524|gb|EWM21339.1| (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana]) HSP 1 Score: 110.923 bits (276), Expect = 1.276e-22 Identity = 111/415 (26.75%), Postives = 176/415 (42.41%), Query Frame = 0
Query: 6 EKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDPENTRNPF--AEDSDRPIGTYTINVTPRGDQGLKNELS-LCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCD---QTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPE--RTCGLYNASQELFLSTVLD---GKLQDYWGILDRQLIPKTQRTRLPDR--SNGYARLQCADASALDACVDPDYLKNVMEDYYPRIQWYTCD 407
E+ ++R+RG FP VRYFS + + IST+ D +I P + +NPF E ++ +GTY I V+ G +G NE++ L P+S S A++ R DP S +R +GY P+VE ++ W + C Q R+ +V + F P F L+ E + A + W + E+ KK + R+TG LP T LF D ++A+ D RY+SF+S + P+ +T+ D Y P G W+R Y+ VA D + CGLYN ++++ L L I+ R L+P + R +N R +C + C K +++++YP +Q +TCD
Sbjct: 155 EEEVYRIRGKFPY--VRYFSFTVYDASLQ-SISTLHDTDIR---PSSGKNPFNDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALRPDST------SPYALLAFRLQLLDPRAGEDRSG--------KNREWGYVDMPLVEILNHRN-------GEWDIIRRCSDEFQARTEEVIENLDLTFNTWWPKNLQIGTECNATEFSLFDPEQNPIIRRGVAVRNANENYIFWCMPKEIG---KKDYIIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFTSADAIPLYPSYETIHDRDIFNHYS-TDPFGSDWDRMYNLVATSDVNLAKKCGLYNRAEDVLLQLTRSPTFTHLPHVPAIVMRHLLPGGGKERRGTEGVANVNLRNECESPTGKLLCDPARSAKVLLQEFYPLVQIWTCD 538
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585109295|gb|EWM27118.1| (hypothetical protein Naga_100046g25 [Nannochloropsis gaditana]) HSP 1 Score: 108.227 bits (269), Expect = 1.472e-21 Identity = 112/444 (25.23%), Postives = 186/444 (41.89%), Query Frame = 0
Query: 12 VRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEI--EVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFYTSDPDRPPVSSKTD--PPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTR--STQVTSLISKHFYGMIPPFA--PPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSP-ELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWNRSYSFVAAEDPERTCGLY-------NASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRL------------------------PDRSNGYARLQ----------CADASALDACVDPDYLKNVMEDYYPRIQWYT 405
V SFP RY S Q+ ++ +++D +I + + P N A G YT+ +T RGDQ NEL P+S+ Q + R Y + + P + PP + +G+A PP + ++ WR P C R ++ + +S+ + PPFA P V NK NN ++L + T G + + DA Y+ +VA P +++ + L ARVTGTLP +L+T P +AN D DVRY+S S++ T+ D Y+ + P G W+R ++ P + Y N + +++ G + +Y G+L RQ++ ++Q L P A ++ C A C P+Y++ M YYP+++++T
Sbjct: 176 VAESFPY--ARYCSYQTYDLRTLMSHQSLRDVDIVPDANGPNCYANLTAAQEGLRQGGYTLYMTARGDQNYTNELRALPDSIESGQFD-----LFFRIYVEEALQGPPQAPWGHLPPYGKDLAFEWGWAPPPRLYAKR-----AHLKDGEWREVPFCQYRRRKGFKLLAYLSEIWPAPSPPFAGHPAVAPNKANN--VFLPKYTDRQGKFASKDANYVASVA---EPRHVRNGSEAMLWARVTGTLPRVPGSLYTPPYVANATDYDVRYVSLSAVHRTIPFRNHATVADTQITEHYQKRLPPGVEWDRKFTIWVV--PPQVESAYPRQVMDENPVIMKWGASLFGGGIVEYTGLLYRQVMARSQVVGLEQGALSASGVVNIVPEACQSGQVGPHGEGADAAMKAGDPLEMEQFCCSTEAPMECFLPEYVRYRMGPYYPQVEYFT 600
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585104143|gb|EWM23216.1| (hypothetical protein Naga_102281g1 [Nannochloropsis gaditana]) HSP 1 Score: 92.8189 bits (229), Expect = 8.973e-19 Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 0
Query: 78 QGLKNELSLCPESMTDRQC-RSVNAVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLIS 177
QG NEL+LCP+ C R +NAV++MRFYTSDPD P +SKTD P S N RLFGY PP VE+R W R+RW++ TCDQ+R T+ T++
Sbjct: 18 QGYPNELALCPDKFN---CPRRMNAVIIMRFYTSDPDLPEANSKTD-PLSANNPRLFGYEAPPTVEKRANNKW-----RERWKLIDTCDQSRPTRFTNVCC 109
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|553186469|ref|XP_005854425.1| (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >gi|422294638|gb|EKU21938.1| hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 80.4925 bits (197), Expect = 1.205e-12 Identity = 54/186 (29.03%), Postives = 92/186 (49.46%), Query Frame = 0
Query: 237 KKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQQPEGEAWN----RSYSFVAAED--PERTCGLYNASQELFLSTVLDGKLQDYWGILDRQLIPKTQRTRLPDRSNGYARLQ-----CADASALDA-CVDPDYLKNVMEDYYPRIQWYTCDQDG 410
+ L+A +TGTLP + L+T P +A++ ++ RY+S S+ L GP + TL D+ + FY WN R Y VAA D + CG + +FLST Y ++ R+++ +Q +R+ D +N + C + + A C + +VM+++YP++ +Y C Q G
Sbjct: 364 QGNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNLRNSRQYKIVAAADLASAKRCG-HLTRDAMFLSTWGQTARVSYPALVLREIL--SQSSRIGDTANNTQSIHNIKQACESIAGVGAKCETSSFASSVMKNFYPKVTYYDCLQGG 546
BLAST of EWM30096.1 vs. NCBI_GenBank
Match: gi|585105664|gb|EWM24273.1| (protein of unknown function DUF1214 [Nannochloropsis gaditana]) HSP 1 Score: 72.7886 bits (177), Expect = 4.056e-10 Identity = 92/325 (28.31%), Postives = 143/325 (44.00%), Query Frame = 0
Query: 22 RYFSLQSNNVDVGFPISTIKDYEI-EVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFY-TSDPDRP--PVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFY--------GMIPP------FAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQ-QPEGEAWNRSYSF----VAAEDPERT 323
R+FS Q+ ++D ++D EI + P N A G YT+ +TP G +G NEL +++ Q +S V++ R Y D P P + + A QP +G+ PP V R+ + WR P+C TR L SK + + PP F P+R NNF +L D ++ ++D L++ A + ++ D + ARV LP T +L++ P IAN D DVRY+SF+S + T +TL D + + YE + + E W+ +S V A PE+
Sbjct: 108 RFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNEL----QTLKYGQ-KSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQR--WGWTPPPRVSVRR------TMRQGSWREIPSC-VTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLR---QNNF--HLPHDH----LFSSVDTRTLVSAAAIPAVDVGD-----VWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQA 404 The following BLAST results are available for this feature:
BLAST of EWM30096.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|