rna577, rna577 (mRNA) Nannochloropsis gaditana

Overview
Namerna577
Unique Namerna577
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2161
Alignment locationCM002455.1:1439249..1440577 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100193g4.5879.mrna
Orig protein idgnl|cribi|Naga_100193g4.5879
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1439249..1440577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100193g4gene555Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna577rna577-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30096.1cds577Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna577 ID=rna577|Name=rna577|organism=Nannochloropsis gaditana|type=mRNA|length=2161bp
TCCCATGATTCCTACAGGCTTATTAAACTAGCATATTTATTTATTCGAGG
AAAGCCTACCATTCATCAAGTCGTGAAGATGGCTCCGCAGTCCACTTCGC
CGCGCCTACATGATAGCAGGGGACGGGGCACATGCAGAAGCAGCAATGTT
GTCTTTGAACGCGCAAACCCCCTATTCGAAGGCACTTTGGACATAGAAGT
GTGCCGTCAAGGCATGCAAGGAGAGCAAAATCAGTCACAGGAGCTTTCCA
GGGAGATGGTACCTCTCACCCTCCGGGTCCTGACCGGCACTGCAAACTCC
ACCTACACAACATCTAATCAAGTTGGCAACTACAGCCGGAGCGAGCATGT
GCTACGTATTGAAATAACCCAGTACGACAACCCAACCGAGGAGAAAGCCG
GCGACGAGGACGCTGCCGCCTCCTACTTCCTCTACACGCTGGACGTATCC
GAGAGCGAGTACCCGATTTTAAAGCGGGATCAGAGCCTGCTGGTCGACTT
CGCCGATTTTCCCGACCAATTCATTGGCTTGGTCGCTCAGTGTCGGGTTT
CCCATTCCAGCACCAACGCCTCCCAACGTTCATCTGCCGCATCTTGCGAC
ACAATCCCAGCTGAGGTCCCCCCTCCCTACCGCGCCCGTCTCACTCTGGC
AACCTCTTCCGCCTTGTCGACTTCTCCTTCTTCTTCTGCGGTCTTCGCCA
TCGTGGAAGCGACGCCGTTCAAGGAGCTTTCCCACCTCTCCCTCGCGTTT
TGTCCTCCCACTGACCACCACTTGAAGGCTTTCCTGGCCACTCGCCTGCA
GCACTTGACCTTCCTCCATGCCGCGGCAGTGCGCACCCACCACTCCGTCT
CCCACATTCTCTCGGAGGAACAGGCCCGGAACCTCTCCTTGACCACAGCT
CTCTCGAGCTTGAGACGTGAGAAGGAAGAAGAAACAGGCACCCTGAAGAG
GACGCACATGGAGGCCATGACCACTGCCCTGGCTGAGCATAGCCGCGAGA
AGGATCAACTGATCTCCAGGCATGAGTCTCAAATGAATGCCTTGCGGAAA
CGGTGCGAGGAGACGGAGCGCCGGCGGATGGAGCTGTCGGAAGCACGGCA
TGCCAACGAGGCGAAGCTGCGAGAGGTGACGCGACGGGTTGAACAACTCA
CGGACCGTCTGGCAGAATCAGACAAGAATACCCGGACATTGGTGGAAGAG
AAGAAAGGACTGGAAGATACCCTGAGAAATGCGGAGAAGCATTGGGACGA
GGCGAAGCTCCGAGAGGAAGGACTCCTGCAAAAATTGAAGGGTCAAGATG
ATGTGTTGGAGCGGACCAAAGCTCTGCAGTTGGTGGCGGAGGGCGCTCGG
AGAAGGATGGAGGAGGCCCTGGAACTCTACAAAAACAATGCATTGGCATT
GCAAGAGAAGCTGGAGGTCTCTGTTGGGGAAATTCAAAAAGGGAACATGA
TTATTCAAAAACTTCAAACTGAAACCCAGACACTCCGAGGGAAAATCAAA
ACCAAAAATGAAGTGCTCAAGAAGCAAGAAGCTTTGTTGGTGGAGGGACG
TCGGGGCCAAGATGCAGGCGTGCACCGCCTAAGTGCAGTCGTACAGGAAA
ACGGGCGTCTGACCCAAGAATTAGGCGCCTTGAAGACTGCCTTGGAAGAA
AGCCGGCGAGAGAACGAGTCGAACCAACAAGTCATCACTTGGCTCAACAA
GGAAATCAACGACTTGCAGCTGGGGCGAGGGAGTCATGGGCTCATGCATG
CAACCGTTGGGGGCATGGAAGGTCCCAAGTATGGAAGAGCGAAACAGCAC
AATTCTTCAACAGCGGCCTCAGTAGCGACATTCATACCTTCATACAATAC
GCCTGCCAAGTATCGAGGGGATACTATCTCACAGGCCACACCTAAGTCGC
CAGTCGAATCAAATGCAGTTGACAAGGACCCACATCAGTCAAAGAGTCCA
CTACCAAGACACTCGCCAAGTCTGGGAGTGAACGTCTCAGCTTCTTCTAT
GTCTACTGCAGCCTCAACACATTATCTGGATGTGCTGGGACTCTCCGATC
CCTACCAGCACTAAAAACATTACAGTAAAAAGATGAAAGAAAAAGAGTGT
GAAATGTGTACATGTCAGCGGAGTACAAACTGGATTGGAAAGAAAAAAAG
TAAATTTTATT
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protein sequence of rna577

>rna577-protein ID=rna577-protein|Name=rna577|organism=Nannochloropsis gaditana|type=polypeptide|length=442bp
MLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEIEVDDP
ENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVN
AVMLMRFYTSDPDRPPVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWT
DDRSRDRWRVFPTCDQTRSTQVTSLISKHFYGMIPPFAPPVRHNKNNNFV
LYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPV
TSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEP
QQPEGEAWNRSYSFVAAEDPERTCGLYNASQELFLSTVLDGKLQDYWGIL
DRQLIPKTQRTRLPDRSNGYARLQCADASALDACVDPDYLKNVMEDYYPR
IQWYTCDQDGTLEEITDYLGAIPVSETLTNKQKTHNGGVGSN
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mRNA from alignment at CM002455.1:1439249..1440577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna577 ID=rna577|Name=rna577|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp|location=Sequence derived from alignment at CM002455.1:1439249..1440577+ (Nannochloropsis gaditana)
ATGCTGAAAACTACCGAGAAGAATATCTTTCGTGTCCGCGGTAGCTTCCC
CCAGGAAGGTGTGCGctacttctccctccaatccAACAATGTGGACGTGG
GATTCCCCATCTCGACCATCAAGGATTACGAAATCGAAGTGGACGACCCA
GAGAATACACGCAATCCGTTTGCGGAGGACTCAGACCGACCCATCGGGAC
ATACACAATAAATGTGACGCCTCGAGGGGATCAAGGGCTAAAAAATGAGC
TCAGTCTGTGTCCGGAATCAATGACCGATCGGCAATGTAGGAGTGTAAAT
GCGGTCATGCTCATGCGTTTCTACACCTCTGACCCGGACCGTCCTCCCGT
CAGCTCCAAAACCGATCCACCCGCCAGCCAGCCCAACGATCGTTTGTTTG
GCTATGCAACACCTCCCATGGTGGAAGAGCGCCAGTTCAAATCCTGGACC
GATGACAGGTCACGCGACCGATGGCGCGTCTTCCCTACTTGCGATCAGAC
ACGTTCCACTCAAGTAACTTCCTTGATTTCCAAGCATTTTTACGGAAtga
ttcctcccttcgcgccGCCCGTCCGCCACAACAAGAACAACAACTTTGTG
CTTTACCTCGGGGAAGACACGGCGACCGCAGGGGTATACCCGAACCTGGA
CGCTGCTTATTTGCTGGCAGTGGCCTGGCAACTTTCTCCAGAGCTGAAAG
ATAAACCCAAGAAGAGATTGATGGCTCGCGTAACGGGCACCTTGCCCGTT
ACTTCCCGAAATCTTTTCACGGATCCCAAGATTGCGAATTACAAGGACGC
GGACGTCCGTTACatgtctttctcctccattgccTTGGTCTCGGGAGGGC
CTACTATGGACACATTGGATGACGCCGCCTTTTTGCGTTTCTACGAGCCC
CAGCAaccggaaggagaggcatgGAACCGCTCCTACTCCTTCGTCGCAGC
CGAGGACCCAGAGCGGACCTGCGGGTTGTATAATGCCTCGCAGGAGTTGT
TCTTGTCCACCGTCCTCGACGGAAAGCTCCAGGACTACTGGGGCATCCTC
GACCGACAACTCATCCCCAAAACGCAACGAACCCGTCTGCCCGACCGCTC
GAACGGATACGCTCGCTTGCAATGTGCGGATGCGTCGGCCTTGGATGCTT
GTGTGGACCCGGACTATCTTAAAAATGTCATGGAGGACTACTACCCTCGC
ATTCAGTGGTACACTTGTGACCAGGACGGGACATTGGAGGAGATCACGGA
TTACCTGGGCGCAATCCCGGTGAGCGAGACGTTGACCAACAAGCAGAAGA
CACACAATGGAGGTGTTGGCTCCAACTAA
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Coding sequence (CDS) from alignment at CM002455.1:1439249..1440577+

>rna577 ID=rna577|Name=rna577|organism=Nannochloropsis gaditana|type=CDS|length=1329bp|location=Sequence derived from alignment at CM002455.1:1439249..1440577+ (Nannochloropsis gaditana)
ATGCTGAAAACTACCGAGAAGAATATCTTTCGTGTCCGCGGTAGCTTCCC
CCAGGAAGGTGTGCGctacttctccctccaatccAACAATGTGGACGTGG
GATTCCCCATCTCGACCATCAAGGATTACGAAATCGAAGTGGACGACCCA
GAGAATACACGCAATCCGTTTGCGGAGGACTCAGACCGACCCATCGGGAC
ATACACAATAAATGTGACGCCTCGAGGGGATCAAGGGCTAAAAAATGAGC
TCAGTCTGTGTCCGGAATCAATGACCGATCGGCAATGTAGGAGTGTAAAT
GCGGTCATGCTCATGCGTTTCTACACCTCTGACCCGGACCGTCCTCCCGT
CAGCTCCAAAACCGATCCACCCGCCAGCCAGCCCAACGATCGTTTGTTTG
GCTATGCAACACCTCCCATGGTGGAAGAGCGCCAGTTCAAATCCTGGACC
GATGACAGGTCACGCGACCGATGGCGCGTCTTCCCTACTTGCGATCAGAC
ACGTTCCACTCAAGTAACTTCCTTGATTTCCAAGCATTTTTACGGAAtga
ttcctcccttcgcgccGCCCGTCCGCCACAACAAGAACAACAACTTTGTG
CTTTACCTCGGGGAAGACACGGCGACCGCAGGGGTATACCCGAACCTGGA
CGCTGCTTATTTGCTGGCAGTGGCCTGGCAACTTTCTCCAGAGCTGAAAG
ATAAACCCAAGAAGAGATTGATGGCTCGCGTAACGGGCACCTTGCCCGTT
ACTTCCCGAAATCTTTTCACGGATCCCAAGATTGCGAATTACAAGGACGC
GGACGTCCGTTACatgtctttctcctccattgccTTGGTCTCGGGAGGGC
CTACTATGGACACATTGGATGACGCCGCCTTTTTGCGTTTCTACGAGCCC
CAGCAaccggaaggagaggcatgGAACCGCTCCTACTCCTTCGTCGCAGC
CGAGGACCCAGAGCGGACCTGCGGGTTGTATAATGCCTCGCAGGAGTTGT
TCTTGTCCACCGTCCTCGACGGAAAGCTCCAGGACTACTGGGGCATCCTC
GACCGACAACTCATCCCCAAAACGCAACGAACCCGTCTGCCCGACCGCTC
GAACGGATACGCTCGCTTGCAATGTGCGGATGCGTCGGCCTTGGATGCTT
GTGTGGACCCGGACTATCTTAAAAATGTCATGGAGGACTACTACCCTCGC
ATTCAGTGGTACACTTGTGACCAGGACGGGACATTGGAGGAGATCACGGA
TTACCTGGGCGCAATCCCGGTGAGCGAGACGTTGACCAACAAGCAGAAGA
CACACAATGGAGGTGTTGGCTCCAACTAA
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Synonyms
Publications