rna530, rna530 (mRNA) Nannochloropsis gaditana

Overview
Namerna530
Unique Namerna530
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length999
Alignment locationCM002455.1:1328570..1329955 +

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Properties
Property NameValue
Productu-box domain-containing protein
Orig transcript idgnl|cribi|Naga_100115g19.6579.mrna
Orig protein idgnl|cribi|Naga_100115g19.6579
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1328570..1329955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100115g19gene512Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna530rna530-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30154.1cds530Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna530 ID=rna530|Name=rna530|organism=Nannochloropsis gaditana|type=mRNA|length=999bp
ATGTGAGGTGCAACGAGGCTCATAAAATCCCCCCCCTCCACGCCCTTTAT
TTGCATTCCACTAATACCAGGAAATGGGGGGACATCCGTCCAAACCTGCC
CGTCATGGAAGATGCTGTAATTCAAGAGAACGAGCCTTCATGCTCGTGTC
TTGGGATGCTGCATTTTTGACCCGCATGATGCGTTCCGCAACCTCACTTG
AAGACAATGGGAGAGAGGTCGACGCGGCACAGCGGGTGATGGATTTAAGC
CAGATATTCGCGGTCGCCCCGCCTCCTGTTGTGGATGCCCGTCGTTTGCT
AACTCTGGTGGAGCAGGGCGTTCAAAATCAGTCTGCAACCACACTCAACA
ACACCACCACCCCCGTCTTTCGATGGGTTCGGGCCCGCCTGGTCCTTTTC
GCCCCCGAGGTCACGCCGTCCCTGGCCCAACTACAGCAAAACACCCGCTT
GTGGCGTATTTTCCGTCGCCGGCGCTATTTTCCTGTGTTGGGGCCTCGGG
ATTTGCAAGCACAGGTGGTTGCTCAAGCATTGAACCGCTTCCAGCGTCAC
GCCAAGCGCCACGGCCCGGGTGTGATTGTCATTGTCGCCGGGGACGGGGC
TTTGGAGGCAGTCCCTAGCTTTGCCACCTCCTTGCGCGCGATGCTCCGGT
GGGGCCATCGTTTGGAAGTGTGGTCGTGGGAAGGGGCTGTCCCCCCCCCT
CTACATGGAACTGGCAGGGGAGTTGGGAGAAGGAAGGGTCCGTGTGTTTT
CTCTGAATGCACACCGGCACATGATACGGTACCGATCAGGAGGTTTCGAG
GACACCAGTGCCTCCGTTAGTGCCTCTGCTCGTGGAAGGAGTGGGGAAGG
AGAGGGAGCCTCCAGCTCCCAGGTCTCCCCTGGGGTGGCACTTCCTCGCC
CTCCCGGTGACGGAGAGCTGCCCGTTGCCATGCCGATGGCCACGCCCGTA
GAGGGAGAGGGGATGTCTATCCTCGCGCAAGTCCAAGGGTGGCTGTCCC
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protein sequence of rna530

>rna530-protein ID=rna530-protein|Name=rna530|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MGQEGGRVGGGEEEGGEEGEEEEGEDAEEEEEKKLHALSALSMSGNEEEE
EEEDAAEEEEEEREDDDEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVIL
EQIRRRALDPMTQEPLQETDLRPNRALREMIEIWRCQRQRRQQPLQDEEK
AEKGTVHAAEGGVGRE
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mRNA from alignment at CM002455.1:1328570..1329955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna530 ID=rna530|Name=rna530|organism=Nannochloropsis gaditana|type=mRNA|length=1386bp|location=Sequence derived from alignment at CM002455.1:1328570..1329955+ (Nannochloropsis gaditana)
gaggaggaggagatgggacaggagggaggcagggtcggaggaggggagga
ggaggggggggaggagggggaggaggaggagggggaagacgcagaggaag
aggaggagaaaaagcttcACGCGCTCTCTGCGCTGTCGATGTcagggaat
gaggaggaggaggaggaggaagatgcagcggaagaggaggaggaggagag
ggaggacgacgacgaggctCCGGAGCCTTTTGTGGACCCGCTGAGCATGG
AGGTCATGCGTGACCCGGTATTGACGCCCTCCGGGTATTCTTACGAACGC
GCCGTGATCCTCGAGCAGATTCGACGGCGGGCCTTGGACCCCATGACGCA
GGAACCTTTGCAGGAGACAGACTTGCGGCCAAACCGGGCGCTGCGGGAGA
TGATCGAGATCTGGCGGTGCCAGCGGCAGAGACGCCAGCAGCCACTGCAA
GACGAAGAGAAAGCTGAAAAAGGCACGGTGCATGCTGCGGAGGGCGGTGT
CGGGCGGGAGTGAAGCCCGGGGAAGCACCagcgaaggagatgggcgggaC
TACGGCGAAGTGGCCCGTCACACGGCTTGAATTTCCATCCCAGATGGTCG
AATAGATTCGAGCGGGTGCATCCCCACGACGTGTGCTGGCATCCCCCAGG
CTCCCGGCTGGCTGTGGCGGTGGCCACGTAGGGAGGCAGCGTCGGGAGGA
ATGGTGCCTGTGCTTGGATGTGGCTCTTCGCAGATGTCCTCTTTCCAAGG
GAGCTCAACGTGGAAGGGAACGGACTGGAGCACCCTGGGGCTCTGATCTG
TGGCGCCACCCCGCCGTCGGCCAGCCCTACGACTCTCCTTGCACTCCTAG
TTGAAGCCCTCGTATCCCCGCTTATTAATCTTCCCACAACAGATTTCGGT
TGCGTTCGACTGGATCAATTGCGAGGCCTCTTTCTCGCATGTAGAGACTG
GGGTACCTCTCTCGGTGGTCACGCCGTGGGCACGTCCTCCGTGAGCCTGT
TGCATCTCGCCATTCCCTGTCTGAATCATGCCCTCTGCATTTCTGTCTCT
AGACTTGCCCATGAGGAAGGAGCCCATCGGATGATGTGCCCGATAGGATT
CCTTTAGTCAGCGCTGAAGTCGCAATCTATGCATTTCCCGAGGTGATAAT
GAACCGTGGGTGTAATCGAGGCTCTGAGACTTTGTGCGCGAATGGGGCCT
CATGCAAAGGCAAAGGAtctggaagggaaggatccAATGACAATAAGAGT
GTTCCTCTTGCATCATGGAACGGCCCATGGTTTTCGCTGTCCCGTTGGGT
GCGAAGAGTTGTCTCAACCTTCTCCCGCCGAAGGTCACGACACCAAGCAG
CGTAAACAAAGCAATGTATGTCGTTGCTAAAAATCG
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Coding sequence (CDS) from alignment at CM002455.1:1328570..1329955+

>rna530 ID=rna530|Name=rna530|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002455.1:1328570..1329955+ (Nannochloropsis gaditana)
atgggacaggagggaggcagggtcggaggaggggaggaggagggggggga
ggagggggaggaggaggagggggaagacgcagaggaagaggaggagaaaa
agcttcACGCGCTCTCTGCGCTGTCGATGTcagggaatgaggaggaggag
gaggaggaagatgcagcggaagaggaggaggaggagagggaggacgacga
cgaggctCCGGAGCCTTTTGTGGACCCGCTGAGCATGGAGGTCATGCGTG
ACCCGGTATTGACGCCCTCCGGGTATTCTTACGAACGCGCCGTGATCCTC
GAGCAGATTCGACGGCGGGCCTTGGACCCCATGACGCAGGAACCTTTGCA
GGAGACAGACTTGCGGCCAAACCGGGCGCTGCGGGAGATGATCGAGATCT
GGCGGTGCCAGCGGCAGAGACGCCAGCAGCCACTGCAAGACGAAGAGAAA
GCTGAAAAAGGCACGGTGCATGCTGCGGAGGGCGGTGTCGGGCGGGAGTG
A
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Synonyms
Publications