EWM30154.1, cds530 (CDS) Nannochloropsis gaditana

Overview
NameEWM30154.1
Unique Namecds530
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1328582..1329082 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30154.1
Productu-box domain-containing protein
Orig transcript idgnl|cribi|Naga_100115g19.6579.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1328582..1329082 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR003613Ubox_domain
Homology
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|585112810|gb|EWM30154.1| (u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 317.39 bits (812), Expect = 2.200e-109
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MGQEGGRVGGGEEEGGEEGEEEEGEDAEEEEEKKLHALSALSMSGNEEEEEEEDAAEEEEEEREDDDEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIEIWRCQRQRRQQPLQDEEKAEKGTVHAAEGGVGRE 166
            MGQEGGRVGGGEEEGGEEGEEEEGEDAEEEEEKKLHALSALSMSGNEEEEEEEDAAEEEEEEREDDDEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIEIWRCQRQRRQQPLQDEEKAEKGTVHAAEGGVGRE
Sbjct:    1 MGQEGGRVGGGEEEGGEEGEEEEGEDAEEEEEKKLHALSALSMSGNEEEEEEEDAAEEEEEEREDDDEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIEIWRCQRQRRQQPLQDEEKAEKGTVHAAEGGVGRE 166          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|1041762440|gb|OBW67240.1| (Uncharacterized protein AUREO_027080 [Aureobasidium pullulans])

HSP 1 Score: 82.8037 bits (203), Expect = 6.448e-16
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0
Query:   68 EAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMI-EIWR 135
            E P+  VD +S E+M DPV+T +G+SYERA +LE ++   +DP+T+EPL   DLRPN ALR+++ E W+
Sbjct:  217 EVPDYLVDTISFEIMHDPVITRTGHSYERATLLEYLKNSPVDPLTREPLTAKDLRPNVALRQVLEEFWK 285          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|662525204|gb|KEQ82589.1| (U-box-domain-containing protein [Aureobasidium pullulans EXF-150])

HSP 1 Score: 82.4185 bits (202), Expect = 7.369e-16
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0
Query:   68 EAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMI-EIWR 135
            E P+  VD +S E+M DPV+T +G+SYERA +LE ++   +DP+T+EPL   DLRPN ALR+++ E W+
Sbjct:  217 EVPDYLVDTISFEIMHDPVITRTGHSYERATLLEYLKNSPVDPLTREPLTVKDLRPNVALRQVLEEFWK 285          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|255083807|ref|XP_002508478.1| (predicted protein [Micromonas commoda] >gi|226523755|gb|ACO69736.1| predicted protein [Micromonas commoda])

HSP 1 Score: 81.2629 bits (199), Expect = 1.755e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 0
Query:   63 REDD--DEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRA-LDPMTQEPLQETDLRPNRALREMIEIW 134
            REDD  DE P+ F   L+ EV RDPV+ PSG+SYER  ++E +R+    DP+T+EPL E+DLRPN +LR     W
Sbjct:  183 REDDRSDEPPDCFCCKLTFEVFRDPVVAPSGHSYERVAVMEHLRKVGKFDPVTREPLVESDLRPNHSLRNAAHEW 257          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|927412750|ref|XP_013952206.1| (hypothetical protein TRIVIDRAFT_159562 [Trichoderma virens Gv29-8] >gi|358380328|gb|EHK18006.1| hypothetical protein TRIVIDRAFT_159562 [Trichoderma virens Gv29-8])

HSP 1 Score: 80.4925 bits (197), Expect = 2.637e-15
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 0
Query:   16 GEEGEEEEGEDAEEEEEKKLHALSALSMSGNEEEEEEEDAAEEEEEEREDDDEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIE 132
              EG+E E    EEE  + +  LS++           E A  + +++RE     P+  +D +S ++M DPV+T +G SYERA I+E +RR   DP+T+EPL   DLRPN ALR+  E
Sbjct:  156 ATEGDETERSIIEEETNQHMALLSSVF----------EAARAQNQKKRE----VPDWAIDDISFDIMVDPVITKTGKSYERATIMEHLRRHPSDPLTREPLSAADLRPNLALRQACE 258          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|615428760|ref|XP_007589064.1| (putative u-box domain-containing protein [Neofusicoccum parvum UCRNP2] >gi|485916082|gb|EOD43493.1| putative u-box domain-containing protein [Neofusicoccum parvum UCRNP2])

HSP 1 Score: 80.8777 bits (198), Expect = 2.873e-15
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 0
Query:   68 EAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALRE 129
            E P+  +D +S E+M DPV+T +G+SYERA ++E ++R  +DP+T+EPL+  DLRPN ALRE
Sbjct:  209 EVPDHLIDNISFEIMHDPVITKNGHSYERATLIEHLKRSPMDPLTREPLKIEDLRPNIALRE 270          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|818168076|gb|KKP07381.1| (STIP1 likey and U-box containing protein 1 [Trichoderma harzianum])

HSP 1 Score: 80.4925 bits (197), Expect = 3.486e-15
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0
Query:   45 GNEEEEEEEDAAEEEEEEREDDDEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIE 132
             NE+        E    + +   E P+  +D +S ++M DPV+T +G SYERA I+E +RR   DP+T+EPL  +DLRPN ALR+  E
Sbjct:  171 ANEKIATLSSVFEASRSQNQKKREVPDWAIDDISFDIMVDPVITKTGKSYERATIMEHLRRHPSDPLTREPLSASDLRPNLALRQACE 258          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|918830003|ref|XP_013431813.1| (U-box-domain-containing protein [Aureobasidium namibiae CBS 147.97] >gi|662520429|gb|KEQ77987.1| U-box-domain-containing protein [Aureobasidium namibiae CBS 147.97])

HSP 1 Score: 79.7221 bits (195), Expect = 7.955e-15
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 0
Query:   68 EAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMI-EIWR 135
            E P+  VD +S E+M DPV+T +G+SYERA +LE ++    DP+T+EPL   +LRPN ALR+++ E W+
Sbjct:  217 EVPDYLVDTISFEIMHDPVITRTGHSYERATLLEHLKNNPTDPLTREPLTPKELRPNVALRQVLEEFWK 285          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|1153495692|gb|OPB47169.1| (hypothetical protein A0O28_0072930 [Trichoderma guizhouense])

HSP 1 Score: 78.9518 bits (193), Expect = 1.203e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 0
Query:   68 EAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIE 132
            E P+  +D +S ++M DPV+T +G SYERA I+E +RR   DP+T+EPL  +DLRPN ALR+  E
Sbjct:  194 EVPDWAIDDISFDIMVDPVITKTGKSYERATIMEHLRRHPSDPLTREPLSASDLRPNLALRQACE 258          
BLAST of EWM30154.1 vs. NCBI_GenBank
Match: gi|1025679488|gb|OAA66798.1| (U-box domain-containing protein [Sporothrix insectorum RCEF 264])

HSP 1 Score: 78.5666 bits (192), Expect = 1.712e-14
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 0
Query:   54 DAAEEEEEEREDDDEAPEPFVDPLSMEVMRDPVLTPSGYSYERAVILEQIRRRALDPMTQEPLQETDLRPNRALREMIE 132
            D  E      E     PE  VD ++  +M DPV+T +G SYERA ILE +RR+  DP+T+EPL   DLRPNR L+   E
Sbjct:  181 DTFERSRSASEKKRRVPEWAVDDITFGIMVDPVITKTGKSYERAAILEHLRRQCTDPLTREPLTTADLRPNRGLKMACE 259          
The following BLAST results are available for this feature:
BLAST of EWM30154.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112810|gb|EWM30154.1|2.200e-109100.00u-box domain-containing protein [Nannochloropsis g... [more]
gi|1041762440|gb|OBW67240.1|6.448e-1650.72Uncharacterized protein AUREO_027080 [Aureobasidiu... [more]
gi|662525204|gb|KEQ82589.1|7.369e-1650.72U-box-domain-containing protein [Aureobasidium pul... [more]
gi|255083807|ref|XP_002508478.1|1.755e-1552.00predicted protein [Micromonas commoda] >gi|2265237... [more]
gi|927412750|ref|XP_013952206.1|2.637e-1539.32hypothetical protein TRIVIDRAFT_159562 [Trichoderm... [more]
gi|615428760|ref|XP_007589064.1|2.873e-1553.23putative u-box domain-containing protein [Neofusic... [more]
gi|818168076|gb|KKP07381.1|3.486e-1542.05STIP1 likey and U-box containing protein 1 [Tricho... [more]
gi|918830003|ref|XP_013431813.1|7.955e-1549.28U-box-domain-containing protein [Aureobasidium nam... [more]
gi|1153495692|gb|OPB47169.1|1.203e-1452.31hypothetical protein A0O28_0072930 [Trichoderma gu... [more]
gi|1025679488|gb|OAA66798.1|1.712e-1446.84U-box domain-containing protein [Sporothrix insect... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna530rna530Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications