EWM30180.1, cds487 (CDS) Nannochloropsis gaditana

Overview
NameEWM30180.1
Unique Namecds487
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1223974..1224209 -
Alignment locationCM002455.1:1222545..1223616 -

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Properties
Property NameValue
Protein idEWM30180.1
ProductPeptidoglycan-binding lysin domain protein
Orig transcript idgnl|cribi|Naga_100090g7.8829.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1223974..1224209 -
CM002455.1supercontigCM002455.1:1222545..1223616 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR018392LysM_dom
Homology
[Close]
BLAST of EWM30180.1 vs. NCBI_GenBank
Match: gi|585112838|gb|EWM30180.1| (Peptidoglycan-binding lysin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 856.284 bits (2211), Expect = 0.000e+0
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0 
Query:    1 MIGQCVAVRTFYRGFSSRFSLSVLRTVGKVASSLSSVRSYGTFLPLLPSSWEEDPITSTPSSLTSSRTANGLVFPVLYRCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAGLTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKFRNCSPSVVELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPIFYYETHPRDSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLKIRNPSFLGGNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGDLRSDSPSSPLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRWNRHLFPTGEPVKSLPPGTLVRIFAAGHEGWRGGGR 435
            MIGQCVAVRTFYRGFSSRFSLSVLRTVGKVASSLSSVRSYGTFLPLLPSSWEEDPITSTPSSLTSSRTANGLVFPVLYRCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAGLTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKFRNCSPSVVELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPIFYYETHPRDSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLKIRNPSFLGGNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGDLRSDSPSSPLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRWNRHLFPTGEPVKSLPPGTLVRIFAAGHEGWRGGGR
Sbjct:    1 MIGQCVAVRTFYRGFSSRFSLSVLRTVGKVASSLSSVRSYGTFLPLLPSSWEEDPITSTPSSLTSSRTANGLVFPVLYRCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAGLTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKFRNCSPSVVELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPIFYYETHPRDSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLKIRNPSFLGGNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGDLRSDSPSSPLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRWNRHLFPTGEPVKSLPPGTLVRIFAAGHEGWRGGGR 435
[Close]
BLAST of EWM30180.1 vs. NCBI_GenBank
Match: gi|585112839|gb|EWM30181.1| (Peptidoglycan-binding lysin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 357/360 (99.17%), Postives = 358/360 (99.44%), Query Frame = 0 
Query:   76 VLYRCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAGLTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKFRNCSPSVVELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPIFYYETHPRDSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLKIRNPSFLGGNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGDLRSDSPSSPLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRWNRHLFPTGEPVKSLPPGTLVRIFAAGHEGWRGGGR 435
            +  RCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAGLTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKFRNCSPSVVELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPIFYYETHPRDSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLKIRNPSFLGGNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGDLRSDSPSSPLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRWNRHLFPTGEPVKSLPPGTLVRIFAAGHEGWRGGGR
Sbjct:   18 LTIRCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAGLTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKFRNCSPSVVELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPIFYYETHPRDSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLKIRNPSFLGGNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGDLRSDSPSSPLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRWNRHLFPTGEPVKSLPPGTLVRIFAAGHEGWRGGGR 377
The following BLAST results are available for this feature:
BLAST of EWM30180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112838|gb|EWM30180.1|0.000e+0100.00Peptidoglycan-binding lysin domain protein [Nannoc... [more]
gi|585112839|gb|EWM30181.1|0.000e+099.17Peptidoglycan-binding lysin domain protein [Nannoc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna487rna487Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications