rna487, rna487 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna487
Unique Name	rna487
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1362
Alignment location	CM002455.1:1222063..1224267 -

Link to JBrowse

Properties


Property Name	Value
Product	Peptidoglycan-binding lysin domain protein
Orig transcript id	gnl\|cribi\|Naga_100090g7.8829.mrna
Orig protein id	gnl\|cribi\|Naga_100090g7.8829
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1222063..1224267 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100090g7	gene469	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna487	rna487-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30180.1	cds487	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1222063..1224267-
coding sequence from alignment at CM002455.1:1222063..1224267-

mRNA sequence

>rna487 ID=rna487|Name=rna487|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp
TGCAAGACAAAATCAAATCATATAGCGCATCATCATATTATTATTTGAAA
ATATGATTCTTTTGCGCGGCTCGTGAGCTATTCAGGCGCTCAACACATAA
AACGTCTTTTAGAAGATACTTAAAAGATCTGGATCATGTGACTTTCTTGG
GCTTAAGATATCAGTATTAAATTATTTCTTCCTTCCTATTGTAGCCCTCA
CTTTCCCTGAGCACAGCCATCTTGAAGGAAGATGTCAACGAAACGTGGTG
GCGGAGCCGTTTCCTTATGCGAACTTATGAAAAAAAAGTCGTCTCGCAAA
AATAGCTCGGATGAAGCAAGCACTCCGGCGGAGACTATAAGTCGATCACA
CTCTCAACAAGGAAGCGAGGGTGAGGTGGAGCACGCGGTAAAAGCCATCG
CTACGGTACAGTCTGAGCTTAATTCGTTGGAAGTATCCCAGACGCAGGCT
TTGACGGAGATCTTGAAGAAATACAAGGAATTGAAAAAGCCAGTTTACAG
CAGGCGACAAGAGGCTATCAAGCAGGTCCCTGAGTTCTGGTTCAAAGTTT
TGCTCGCACATCCTGCCATCGGCGAGCACATCTCCGACCCGGATCAAGGC
GCCCTGCGTCATCTGACGGCTGTGGAGGTGGTGGACGTCACAGAGGAAAG
GTTGGATGGAGCAAGGGAAGAAGAAAGTGAAGGCGGGCAGGAGCAGGGCG
GTGGCAGGATCCTGCCGGATTATCGCGTGAACTTCTATTTCTCCCCCAAT
GTGTATTTTGAGAACTCGGTGCTGTGGAAGGAATTCCGTTTCCGCAACGA
CGAAGCCACCGTCTCGGCGTCGGAAGTGTTGTGGAAGGATACGCAGGAAA
GCAAAGGCTTGCAAGAAACCCTGGTGCCTCACCTGCTGGCGCAAGACCCG
GTCCCCGAGAACGTCCAGCCGTCTTTCTTCTCCATCTTCCACGCGGAGGA
TCGGGACCTGGAGATGGGCGATGTCCTCAAGGAGGAGGTGTGGAGGGATC
CGGTTGGGATATATTTGTCTGCGGATTTCGAAGAGGAAGGGGAGGAGGGG
GAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGAGGATGGAAGGACAGGAAG
AGGGTAGAGGGCAGAGAAAATTTGCGTCTTACATATGGACCCTCACGTGA
ACCATGCACTGGAATGAGGCTATCTACGTTCTTCGTTTAGTCTTTGTTGC
CTGGTCTCATAGAAGGAGTTGCCATCTCCTCCTCCTTGTTCCTTGCCATC
CCTCTTTATACCCGCAGCCATTAACAACGGCCACGGAAGTGATGCGCGAG
GCACTGTCATACCCTATGACATGATCAAAGCCTCACACCGGCATGTTTAT
AAAACACTCCCG

protein sequence of rna487

>rna487-protein ID=rna487-protein|Name=rna487|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MIGQCVAVRTFYRGFSSRFSLSVLRTVGKVASSLSSVRSYGTFLPLLPSS
WEEDPITSTPSSLTSSRTANGLVFPVLYRCLLLADREGELCGVRLGSGRR
PGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLP
VDEEGDAGLTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKF
RNCSPSVVELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPI
FYYETHPRDSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLK
IRNPSFLGGNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGD
LRSDSPSSPLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRW
NRHLFPTGEPVKSLPPGTLVRIFAAGHEGWRGGGR

mRNA from alignment at CM002455.1:1222063..1224267-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna487 ID=rna487|Name=rna487|organism=Nannochloropsis gaditana|type=mRNA|length=2205bp|location=Sequence derived from alignment at CM002455.1:1222063..1224267- (Nannochloropsis gaditana)
TTGAGGGCTCTTTTTGCGGTGTGCACGTCTCACCCACGATCTTCCTCTTT
CTAACTTTATGATCGGCCAATGCGTTGCTGTGCGGACGTTCTATCGAGGT
TTCTCATCACGATTTTCTCTGTCCGTTCTAAGAACAGTTGGAAAAGTGGC
GTCCTCCTTATCATCTGTTCGGAGCTACGGTACTTTTTTACCTCTGCTGC
CGTCTTCATGGGAGGAGGACCCCATTACTAGCACTCCATCGAGCTTGACT
TCGTCGAGGACGGCCAATGGCCTGGTATTCCCCGTCTTGTACAGGTTCGT
GGTGTCATGGTGTCGAACACGACGATGAGTGAAAGGGATTAGGCGGCATT
TATGCTGGGGATCCGTCCATACGGCGCATTTGTGAGAATATCTCGTGAGC
TCCACCGCGTTAGCTTTTCAGTTGATGGTATACATATGTCTTGGGTGGAG
CGCTTGGTACATTTGTACTCTCGTGTTTTGTAATCGGCAACTTGTTCGCT
TCATTGCCACCGGTGGGGTGCAGAACGCAGCTTGATTTCTTTTTTGTAGT
CCAAAAAGGCCTGCAAGCTCACGCCTCGATGGCGGATGAATGATTGTTTC
AGTCCTTGACACCGTGCAAACCGCTTTCTTGTCGTCCCTCCTTACCATCA
GGTGCCTACTCCTTGCGGATAGAGAGGGTGAGCTCTGCGGCGTAAGGCTG
GGTTCCGGCAGGCGGCCCGGAGAGCAACTAATCGTCTCCGAGATCGTCAG
CGAGAGCGTGCAGGAGGTGTGTCAGATACGGAAGGGGGACATCGTCACCC
ATGTCAACGGGGCACCCGTGGGCGCCTCCTTCCTTCCCGCACGGGGAGCC
CGACGCCGCCTGCCCGTGGATGAAGAGGGGGATGCCGGGCTTACACAGGG
ATGGCCCATGACATGCCCGTCTACGCAAGCATTGGGAAGGGCTTTCTCAC
CTGGTTTCGAGGGCGAGCACCAGGTCCCGCCACTCCCTTCGGCGCTACCA
GGGCGACCCAAGTTCCGAAACTGCTCTCCTTCTGTCGTCGAGCTCCGGCT
GATACGGGCCAACAGCCTGCCAACCACTCCCCCTTTCTCCTCCTCGCCTT
CCTCCCCTCCCTCATTTCCGTCCTCGCCAGCTTCGTCCTCCCTTCTCCGC
CCGGAGCTTCCCATTTTTTACTACGAGACCCATCCCCGCGACAGCTTGGA
GAGCATCGCGCTGCTGTTTCAGACCACGCCCGAGGTCATTCGCAGGGATA
ACCGGGGCTATTTTCGCGCGGGGGAGCGAGCAGAGGGGACGGTCCCGCCC
GGATTGCTTTTGAAGATTCGGAACCCCTCCTTCCTGGGCGGCAACGGACC
GGGGACAGAGGAGAAAGGGCGCGAAGAAGAGGAGGAAGAGGCGGACGGGG
CGGAAGGGGAAGTTGGCGTGCTTGTCCAATCGAGGGAGGGCTCACCCGTA
CTGGCCTCTGGTGACCTGCGGAGCGACAGCCCCTCTTCCCCCCTTTCCCT
CCCAACCTCCCCCCGCACGTCGTGCCAGAGCCGGTACTGGGAGGTGGGGG
CCGGGGAGTCGGTCTCGGACCTGGCTCGGCGCTTGAAGGTGGGCGTGCTG
GAGCTACGGAGATGGAACCGTCACCTGTTTCCGACGGGGGAGCCGGTCAA
GAGCTTACCTCCGGGTACGCTGGTGCGGATCTTTGCGGCCGGGCATGAGG
GATGGAGGGGGGGAGGAAGATGACAAGTAGGAGGGAGGAGGGAGGGAGGG
GGGAGGCGCGAAGGGGGCATTGGACGCGGTCCGACTAGACAAGGGAGATA
TAATGGGAGGCGGGAGACCTCGAAAGGGAGAGCTTTCTCCTAGGATCTTG
GAGGGAGGGACGCGGCCGATGTGAGCGATTCTTAGGGGGCCTTTGAGGGG
CACAAAGCATTAACTGATGGCCGAGCGAATCGAGCTATGGTCCCGCGGGA
GTGTTTTATAAACATGCCGGTGTGAGGCTTTGATCATGTCATAGGGTATG
ACAGTGCCTCGCGCATCACTTCCGTGGCCGTTGTTAATGGCTGCGGGTAT
AAAGAGGGATGGCAAGGAACAAGGAGGAGGAGATGGCAACTCCTTCTATG
AGACCAGGCAACAAAGACTAAACGAAGAACGTAGATAGCCTCATTCCAGT
GCATGGTTCACGTGAGGGTCCATATGTAAGACGCAAATTTTCTCTGCCCT
CTACC

Coding sequence (CDS) from alignment at CM002455.1:1222063..1224267-

>rna487 ID=rna487|Name=rna487|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at CM002455.1:1222063..1224267- (Nannochloropsis gaditana)
GTGCCTACTCCTTGCGGATAGAGAGGGTGAGCTCTGCGGCGTAAGGCTGG
GTTCCGGCAGGCGGCCCGGAGAGCAACTAATCGTCTCCGAGATCGTCAGC
GAGAGCGTGCAGGAGGTGTGTCAGATACGGAAGGGGGACATCGTCACCCA
TGTCAACGGGGCACCCGTGGGCGCCTCCTTCCTTCCCGCACGGGGAGCCC
GACGCCGCCTGCCCGTGGATGAAGAGGGGGATGCCGGGCTTACACAGGGA
TGGCCCATGACATGCCCGTCTACGCAAGCATTGGGAAGGGCTTTCTCACC
TGGTTTCGAGGGCGAGCACCAGGTCCCGCCACTCCCTTCGGCGCTACCAG
GGCGACCCAAGTTCCGAAACTGCTCTCCTTCTGTCGTCGAGCTCCGGCTG
ATACGGGCCAACAGCCTGCCAACCACTCCCCCTTTCTCCTCCTCGCCTTC
CTCCCCTCCCTCATTTCCGTCCTCGCCAGCTTCGTCCTCCCTTCTCCGCC
CGGAGCTTCCCATTTTTTACTACGAGACCCATCCCCGCGACAGCTTGGAG
AGCATCGCGCTGCTGTTTCAGACCACGCCCGAGGTCATTCGCAGGGATAA
CCGGGGCTATTTTCGCGCGGGGGAGCGAGCAGAGGGGACGGTCCCGCCCG
GATTGCTTTTGAAGATTCGGAACCCCTCCTTCCTGGGCGGCAACGGACCG
GGGACAGAGGAGAAAGGGCGCGAAGAAGAGGAGGAAGAGGCGGACGGGGC
GGAAGGGGAAGTTGGCGTGCTTGTCCAATCGAGGGAGGGCTCACCCGTAC
TGGCCTCTGGTGACCTGCGGAGCGACAGCCCCTCTTCCCCCCTTTCCCTC
CCAACCTCCCCCCGCACGTCGTGCCAGAGCCGGTACTGGGAGGTGGGGGC
CGGGGAGTCGGTCTCGGACCTGGCTCGGCGCTTGAAGGTGGGCGTGCTGG
AGCTACGGAGATGGAACCGTCACCTGTTTCCGACGGGGGAGCCGGTCAAG
AGCTTACCTCCGGGTACGCTGGTGCGGATCTTTGCGGCCGGGCATGAGGG
ATGGAGGGGGGGAGGAAGATGAATGATCGGCCAATGCGTTGCTGTGCGGA
CGTTCTATCGAGGTTTCTCATCACGATTTTCTCTGTCCGTTCTAAGAACA
GTTGGAAAAGTGGCGTCCTCCTTATCATCTGTTCGGAGCTACGGTACTTT
TTTACCTCTGCTGCCGTCTTCATGGGAGGAGGACCCCATTACTAGCACTC
CATCGAGCTTGACTTCGTCGAGGACGGCCAATGGCCTGGTATTCCCCGTC
TTGTACAGGTGCCTACTCCTTGCGGATAGAGAGGGTGAGCTCTGCGGCGT
AAGGCTGGGTTCCGGCAGGCGGCCCGGAGAGCAACTAATCGTCTCCGAGA
TCGTCAGCGAGAGCGTGCAGGAGGTGTGTCAGATACGGAAGGGGGACATC
GTCACCCATGTCAACGGGGCACCCGTGGGCGCCTCCTTCCTTCCCGCACG
GGGAGCCCGACGCCGCCTGCCCGTGGATGAAGAGGGGGATGCCGGGCTTA
CACAGGGATGGCCCATGACATGCCCGTCTACGCAAGCATTGGGAAGGGCT
TTCTCACCTGGTTTCGAGGGCGAGCACCAGGTCCCGCCACTCCCTTCGGC
GCTACCAGGGCGACCCAAGTTCCGAAACTGCTCTCCTTCTGTCGTCGAGC
TCCGGCTGATACGGGCCAACAGCCTGCCAACCACTCCCCCTTTCTCCTCC
TCGCCTTCCTCCCCTCCCTCATTTCCGTCCTCGCCAGCTTCGTCCTCCCT
TCTCCGCCCGGAGCTTCCCATTTTTTACTACGAGACCCATCCCCGCGACA
GCTTGGAGAGCATCGCGCTGCTGTTTCAGACCACGCCCGAGGTCATTCGC
AGGGATAACCGGGGCTATTTTCGCGCGGGGGAGCGAGCAGAGGGGACGGT
CCCGCCCGGATTGCTTTTGAAGATTCGGAACCCCTCCTTCCTGGGCGGCA
ACGGACCGGGGACAGAGGAGAAAGGGCGCGAAGAAGAGGAGGAAGAGGCG
GACGGGGCGGAAGGGGAAGTTGGCGTGCTTGTCCAATCGAGGGAGGGCTC
ACCCGTACTGGCCTCTGGTGACCTGCGGAGCGACAGCCCCTCTTCCCCCC
TTTCCCTCCCAACCTCCCCCCGCACGTCGTGCCAGAGCCGGTACTGGGAG
GTGGGGGCCGGGGAGTCGGTCTCGGACCTGGCTCGGCGCTTGAAGGTGGG
CGTGCTGGAGCTACGGAGATGGAACCGTCACCTGTTTCCGACGGGGGAGC
CGGTCAAGAGCTTACCTCCGGGTACGCTGGTGCGGATCTTTGCGGCCGGG
CATGAGGGATGGAGGGGGGGAGGAAGATGAATGATCGGCCAATGCGTTGC
TGTGCGGACGTTCTATCGAGGTTTCTCATCACGATTTTCTCTGTCCGTTC
TAAGAACAGTTGGAAAAGTGGCGTCCTCCTTATCATCTGTTCGGAGCTAC
GGTACTTTTTTACCTCTGCTGCCGTCTTCATGGGAGGAGGACCCCATTAC
TAGCACTCCATCGAGCTTGACTTCGTCGAGGACGGCCAATGGCCTGGTAT
TCCCCGTCTTGTACAG

Synonyms

Publications