rna354, rna354 (mRNA) Nannochloropsis gaditana

Overview
Namerna354
Unique Namerna354
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3594
Alignment locationCM002455.1:865998..866504 -

Link to JBrowse

Properties
Property NameValue
Productap-4 complex subunit sigma
Orig transcript idgnl|cribi|Naga_100003g142.1740.mrna
Orig protein idgnl|cribi|Naga_100003g142.1740
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:865998..866504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g142gene341Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30223.1cds354Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna354rna354-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna354 ID=rna354|Name=rna354|organism=Nannochloropsis gaditana|type=mRNA|length=3594bp
ATGGCACCACCAAGCGCGGAAAATTGCAGCAGCGGGATTAAAGCTTCAAA
TGCTAGTAATTTGGGATCAAACTTTTTCTTCACGGAGCTAGCGGACCAAT
CACAAGAAGATGTGAGTAAGCCTGTGACAGACGTTGCCGATAAGTGGAAG
TTGCTGCCCCATTTTTTGCAGCTCCGGGGCCTGATGCGTCAACATATCGA
TTCCTTCGACTTTTTCGTCAACCGTGAGATCAAAGATATTGTGAACGCCG
CATCCAATCGTGAATTGCGCTCAGAAGCTGATCCTAAGTTTTGGCTGCGT
TATACGGACGTGCACGTAGGTGAACCGTCCGTAGACGACGACGCTTACGT
GAGCTCCCGGGTGACCCCCTTCCAGTGCCGCCTTCGAGACTGCACTTACT
CGGCACCCATTACTGTGGATGTCCGATATACGAGGGGGAGACAGATAGTG
GTGAAGCGCGGAGTCATGATCGGACGGATCCCTATTATGCTCCGGTCCTG
CAAGTGCATCTTGGCTGGGAGAAGTGAGGCCGAGTTGGCCGAAAAAAAAG
AATGCCCTTATGATCCAGGGGGCTACTTTATTGTAAAAGGCGTGGAAAGA
GTAATACTGATGCAAGAGCAACTGAGCAAAAATCGCGTTATCATCGAAGA
AGATAACAAGGGCAACGTCAGCGCCTCCATCACGTCCTCAACGCATGACA
GGAAAGGGCGCTCGAATATTTTTGTCAAAAATGGAACCAAAGTCTACCTG
AAGAATAACTTGCTTGGGGACGATGTTCCAATTGTTGTGGTGCTGAAGGC
GATGGGAATGCAGTCGGATCAGGAGATCGTATGTATGGTCGGAGACTCTC
CCGAAATGTTGGACGCGTTCGCTCCTTCGTTGGAAGAGCCTTATCATCTA
GGAATCTGTACCCAAGCGCAAGCTCTTAGATATATTGGAGCCAAAATTCG
GAACACTACACAGAACCGAGGACCGGGTCCGTCTGGCATGGGTTTCGCGT
TCTACCGACGGGCCAGCTCTCCGGAGGAGGAAGCTCGGGAAGTGCTTGCG
TCGGTAATTCTTAATCATGTGCCAGTCATAAACTTTGACTTTCGAACCAA
ATGCATTTTTGTGTGCCACGTCATCAGGCGCGTGCTTCTTACGCACAGGG
ACCGCAGCCAACTCGACGATAAGGACTACTACGGGAACAAGAGACTGGAG
CTGGCTGGGCAACTGCTTTCGCTCCTTTTTGAGGATCTTTTCAAGCGCTT
GAATGTGCAACTGAAGAAACAGGCAGATCAGGGCCTGAGCAAGCCAAATC
GGACGCAAAGTTTCGACGTGATTAAATGCATCCGGACAGATACGATCACG
AATGGTTTTATTCAAGCCATCGCAACTGGAAATTGGAAGCTTCAGCGTTT
CCGAATGGATCGACAAGGTGTAACGCAAGTTTTAACACGGCTTTCGTACA
TTTCGTGTTTGGGTATGATGACACGAATCAATTCTCAGTTTGAGAAAACA
CGAAAAGTCTCAGGTCCCCGCTCCCTTCAACCTTCTCAATGGGGCATGAT
CTGTCCGGCAGACACGCCTGAGGGCGAGGCATGCGGTCTGGTGAAAAACT
TGGCCTTGCTCGCTCATGTCACGACTGACGAAGAGAGCGAGCCCATCCGT
AAACTATGCTTCGATCTTGGGATCGAGGATGTGACGCTTTTGAGCGGGGC
GGAGATAAACGCCTCAAGCAATTACCTCGTTTTTCTGAACGGACTCATCG
TTGGATGCCATTCAAGACCCTTGCGATTTGTCCGCCTGTTACGTCTGTTG
CGCAGGAAAGGGTTGGTAGCCGAGTTTGTGTCTGTGTGTCTACATGAAGT
TCAGCGTGCAATTTACATTGCCACAGACGGTGGCAGGGTCTGTCGCCCTC
TTTTGGTTTGTGAAAAGGGCGTGCCCCGTCTTACAAACATGATGATGCGC
CAGCTCTCATCAGGCCTTCTGACTTTGGCAGAGCTCATTCGATGCGGTGT
TGTGGAGTACGTGGACGTGAACGAGGAAAATAATTGTTTAATAGCTCTTG
CTCAGACTCAACTGACAGTCAAGCACACACACATGGAGATCGATCCTTTG
ACTGTGCTTGGCGTAGTAGCTGGGTTGATACCTTACCCACATCATAATCA
GTCTCCGCGAAATACGTACCAGTGTGCCATGGGAAAACAAGCGATGGGCA
CAGTCGCGCTCAATCAGTACGAACGTTTAGACTCGCTTCTGTACGCTATG
GTATATCCACAAAAACCTTTGGTGACCACGCGCACATTGGATCTTGTAAA
TTTTAATGAACTTCCAGGCGGTCAAAATGCCATCGTGGCTGTCATGTCTT
ACTCTGGCTACGACATAGAGGATGCCGTTGTGCTCAACAAAGCTAGTCTG
GACCGCGGTTTCGGTCGATGTCTCATACTTCGCAAGCATCAGACATCTCT
TCGTAAGTATGCTAATGGTGCAGCCGACAACCTTAGAGGCCCACCCGAGG
ATACGGCAGCGGTATGTTCGGGGATGGGTGGGGAACCAAGCGCGGCACAA
TCAAATTTAGCTGGAGCATATTCAATTCGACGGGATCCACGATTACGACG
CTTTGAGGCGTTGGATAAGGATGGAATCTGTCAGGTGGGAGAGCGGCTCG
GAAATGGATCAGTTATGATCAATAAGGAGTCGCCAATATCTGTGGCAGAT
TTGAACATGGGAAGTGGAGCAGATCCGACGCCTTTCAAACCCACACCACT
TTCGTACAAAGGTCCCGCCCCCAGCCACGTGGATCAGGTTCTAATTACTT
CAAACGAAGGAGGAGACTTGCTTGTGAAGGTCAGTGTGCGACAGTGTCGA
CGACCGGAAGTTGGCGACAAATTTTCCAGTCGGCACGGCCAAAAGGGCGT
TTGTGGAATCATTGTAGCACAAGAAGACATGCCATTTAACGATGACGGAA
TATGTCCGGATCTTATCATGAATCCACACGGCTTTCCCTCCCGGATGACC
GTTGGGAAACTTATCGAATTCGTGGCGGGTAAGGCAAGCGTTATGATCGG
ACGGCAGGCATATGGGACAGCGTTTGGGGAAGACTTTGGAAGCGCTGATC
GGGTTGTGGCTTGCTCTGGCGCTTTGGTTGAAAATGGCTTCAGTTATGTT
GGCAAAGAGATCATCACGAGTGGCACAAGTGGGGAACCGCTACTCACATA
TATATTTCAAGGGCCCGTTTTTTATCAAAAACTCAAACATATGGTGATGG
ACAAGATGCATGCTCGCGCCCGCGGCCCCAGGGCAGTGCTGACGCGACAG
CCTACGGAGGGACGGTCACGGGACGGGGGGTTGCGGCTCGGAGAAATGGA
GCGTGATTGTTTAATCGGGTATGGAGCTTCTTCATTACTCACTGAGCGGC
TCATGATTTCTTCCGATGCTTTCACTGCCACGGTTTGCGAAAGATGTGGC
TTATTGGGGTATGCTGGGTGGTGTCAAAGCTGTAGGTCGTCAGAAAGAAT
GGCCGACATTCGTCTCCCCTACGCCTGCAAGCTTCTTTTTCAGGAACTCC
AGAGCATGAATGTTATCCCAAAATTAAAGCTGATGGAGTTTTAA
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protein sequence of rna354

>rna354-protein ID=rna354-protein|Name=rna354|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFI
EYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIH
ALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPI
HLMEKASASEESIFSRRG
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mRNA from alignment at CM002455.1:865998..866504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna354 ID=rna354|Name=rna354|organism=Nannochloropsis gaditana|type=mRNA|length=507bp|location=Sequence derived from alignment at CM002455.1:865998..866504- (Nannochloropsis gaditana)
ATGATTAGATTCATATTGTTCGTCAACAAACAGGGCCAAACAAGGCTTTC
TAGCTACTATACATGGATGAGCATTCCCGAACGTGTCGCTCTGGAAGCAG
AGATCATCCGAAAGTGCTTGTCCCGCTCTGAGCTTCAATGTCAGTTTATA
GAATACCGGGGGCATAAAGTCATTTACCGACGGTATGCGTCACTATTTTT
CATTGTGGGTGTAGAAGGAGATGATGCCACGGGAAGTGCCCACAGCGTAA
GTACAAATGGTGGGTGCGAGAATGAGTTGGCCATCTTGGAATTTATCCAT
GCCTTGGTGGAGACTTTAGATAAGTACTTTGAAAGCGTCTGCGAGCTGGA
CATAATGTTCAACTTGGAGAAGGCACATTTCATTGTTGACGAAATGGTAA
TTAATGGACACATAGTGGACGCCAACAAGACAAATATCTTAAAACCAATA
CACCTTATGGAGAAAGCAAGCGCGAGTGAGGAGTCGATCTTTTCGAGGAG
AGGATAG
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Coding sequence (CDS) from alignment at CM002455.1:865998..866504-

>rna354 ID=rna354|Name=rna354|organism=Nannochloropsis gaditana|type=CDS|length=507bp|location=Sequence derived from alignment at CM002455.1:865998..866504- (Nannochloropsis gaditana)
ATGATTAGATTCATATTGTTCGTCAACAAACAGGGCCAAACAAGGCTTTC
TAGCTACTATACATGGATGAGCATTCCCGAACGTGTCGCTCTGGAAGCAG
AGATCATCCGAAAGTGCTTGTCCCGCTCTGAGCTTCAATGTCAGTTTATA
GAATACCGGGGGCATAAAGTCATTTACCGACGGTATGCGTCACTATTTTT
CATTGTGGGTGTAGAAGGAGATGATGCCACGGGAAGTGCCCACAGCGTAA
GTACAAATGGTGGGTGCGAGAATGAGTTGGCCATCTTGGAATTTATCCAT
GCCTTGGTGGAGACTTTAGATAAGTACTTTGAAAGCGTCTGCGAGCTGGA
CATAATGTTCAACTTGGAGAAGGCACATTTCATTGTTGACGAAATGGTAA
TTAATGGACACATAGTGGACGCCAACAAGACAAATATCTTAAAACCAATA
CACCTTATGGAGAAAGCAAGCGCGAGTGAGGAGTCGATCTTTTCGAGGAG
AGGATAG
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Synonyms
Publications