EWM30223.1, cds354 (CDS) Nannochloropsis gaditana

Overview
NameEWM30223.1
Unique Namecds354
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:865998..866504 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30223.1
Productap-4 complex subunit sigma
Orig transcript idgnl|cribi|Naga_100003g142.1740.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:865998..866504 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
Homology
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|553196559|ref|XP_005856373.1| (AP-4 complex subunit sigma-1 [Nannochloropsis gaditana CCMP526] >gi|422292687|gb|EKU19989.1| AP-4 complex subunit sigma-1 [Nannochloropsis gaditana CCMP526] >gi|585112882|gb|EWM30223.1| ap-4 complex subunit sigma [Nannochloropsis gaditana])

HSP 1 Score: 347.436 bits (890), Expect = 3.254e-121
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRRG 168
            MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRRG
Sbjct:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRRG 168          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|676384465|ref|XP_009035511.1| (hypothetical protein AURANDRAFT_24131 [Aureococcus anophagefferens] >gi|323453572|gb|EGB09443.1| hypothetical protein AURANDRAFT_24131 [Aureococcus anophagefferens])

HSP 1 Score: 249.21 bits (635), Expect = 1.458e-82
Identity = 123/166 (74.10%), Postives = 137/166 (82.53%), Query Frame = 0
Query:    2 IRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRR 167
            IRFIL VNKQGQTRLS+YY W+ +PERVALE+EIIRKCLSRSE QC F+EYRG+KV+YRRYASLFFIVG E D               ENEL ILEFIHALVETLDKYFESVCELDIMFNLEKAHFI+DEMV+NG IV+ NK N+LKPI LMEK  ASEE++FS+R
Sbjct:    3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGCEQDS--------------ENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEK--ASEETLFSKR 152          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|325180077|emb|CCA14478.1| (AP4 complex subunit sigma putative [Albugo laibachii Nc14])

HSP 1 Score: 241.506 bits (615), Expect = 1.298e-79
Identity = 117/157 (74.52%), Postives = 134/157 (85.35%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
            MI+F+L VNKQGQTRL+ YY ++SI ERVALEAEIIRKCLSR+E QC F+EYRG+KVIYRRYASLFFIVGV+ DD+             ENEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEMV+NG IV++NK +ILKPIHLMEK+S
Sbjct:    1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQNDDS-------------ENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEKSS 144          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|301112128|ref|XP_002905143.1| (AP-4 complex subunit sigma, putative [Phytophthora infestans T30-4] >gi|675174951|ref|XP_008896360.1| AP-4 complex subunit sigma [Phytophthora parasitica INRA-310] >gi|675174957|ref|XP_008896363.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica INRA-310] >gi|695396096|ref|XP_009521354.1| hypothetical protein PHYSODRAFT_555587 [Phytophthora sojae] >gi|262095473|gb|EEY53525.1| AP-4 complex subunit sigma, putative [Phytophthora infestans T30-4] >gi|348686251|gb|EGZ26066.1| hypothetical protein PHYSODRAFT_555587 [Phytophthora sojae] >gi|566012957|gb|ETI35868.1| AP-4 complex subunit sigma [Phytophthora parasitica P1569] >gi|566012958|gb|ETI35869.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica P1569] >gi|567950419|gb|ETK76131.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|567950420|gb|ETK76132.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|567979095|gb|ETL29577.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|567979096|gb|ETL29578.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|568008557|gb|ETL82774.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|568008558|gb|ETL82775.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|568038500|gb|ETM36029.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|568038501|gb|ETM36030.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|568104074|gb|ETN18731.1| AP-4 complex subunit sigma [Phytophthora parasitica INRA-310] >gi|568104075|gb|ETN18732.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica INRA-310] >gi|570316632|gb|ETO64580.1| AP-4 complex subunit sigma [Phytophthora parasitica P1976] >gi|570316633|gb|ETO64581.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica P1976] >gi|570940422|gb|ETP05679.1| AP-4 complex subunit sigma [Phytophthora parasitica CJ01A1] >gi|570940423|gb|ETP05680.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica CJ01A1] >gi|570970690|gb|ETP33809.1| AP-4 complex subunit sigma [Phytophthora parasitica P10297] >gi|570970691|gb|ETP33810.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 241.121 bits (614), Expect = 1.803e-79
Identity = 117/157 (74.52%), Postives = 133/157 (84.71%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
            MI+F+L VNKQGQTRL+ YY ++SI ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV+ DD+             ENEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEMV+NG+IV+ NK +ILKPIHLMEKAS
Sbjct:    1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLGRNETQCSFVEYRGYKVIYRRYASLFFIVGVKDDDS-------------ENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGYIVETNKISILKPIHLMEKAS 144          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|673038156|ref|XP_008873039.1| (AP-4 complex subunit sigma [Aphanomyces invadans] >gi|574471156|gb|ETV98164.1| AP-4 complex subunit sigma [Aphanomyces invadans])

HSP 1 Score: 234.572 bits (597), Expect = 8.265e-77
Identity = 113/157 (71.97%), Postives = 130/157 (82.80%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
            MI+F+L VNKQGQTRL+ YY ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV  DD+             +NEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct:    1 MIKFVLMVNKQGQTRLAQYYDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGQIVETNKLSILKPIHLMEKSS 144          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|698818743|ref|XP_009842400.1| (AP-4 complex subunit sigma [Aphanomyces astaci] >gi|574102551|gb|ETV68101.1| AP-4 complex subunit sigma [Aphanomyces astaci])

HSP 1 Score: 234.187 bits (596), Expect = 1.111e-76
Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
            MI+F+L VNKQGQTRL+ YY ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV  DD+             +NEL +LEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct:    1 MIKFVLMVNKQGQTRLAQYYDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGVLEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGQIVETNKLSILKPIHLMEKSS 144          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|873232487|emb|CEM05376.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 231.491 bits (589), Expect = 1.199e-75
Identity = 115/157 (73.25%), Postives = 131/157 (83.44%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
            MI+FIL VNKQGQTRLS YY ++SIPERVALE E+IRKCLSR+ELQC F+EYR +KVIYRRYASL+FIVGV   D+ G           ENEL+ILEFIH LVETLDKYFE+VCELDIMFNLEKAHFI+DEMV+NG I++ NKTNIL  I+LMEKAS
Sbjct:    1 MIKFILLVNKQGQTRLSQYYDYLSIPERVALEGELIRKCLSRTELQCSFMEYRQYKVIYRRYASLYFIVGV---DSEG-----------ENELSILEFIHTLVETLDKYFENVCELDIMFNLEKAHFILDEMVVNGCILETNKTNILGSIYLMEKAS 143          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|1173940526|gb|OQR89916.1| (AP-4 complex subunit sigma [Thraustotheca clavata] >gi|1173953410|gb|OQS00955.1| AP-4 complex subunit sigma [Achlya hypogyna])

HSP 1 Score: 230.335 bits (586), Expect = 3.179e-75
Identity = 112/157 (71.34%), Postives = 129/157 (82.17%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
            MI+F+L VNKQGQTRL+ Y  ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV  DD+             +NEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct:    1 MIKFVLMVNKQGQTRLAQYVDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGCIVETNKVSILKPIHLMEKSS 144          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|669171317|ref|XP_008621007.1| (AP-4 complex subunit sigma [Saprolegnia diclina VS20] >gi|813151125|ref|XP_012201154.1| AP-4 complex subunit sigma [Saprolegnia parasitica CBS 223.65] >gi|530727309|gb|EQC25551.1| AP-4 complex subunit sigma [Saprolegnia diclina VS20] >gi|641534057|gb|KDO28016.1| AP-4 complex subunit sigma [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 229.95 bits (585), Expect = 4.666e-75
Identity = 111/157 (70.70%), Postives = 129/157 (82.17%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
            MI+F+L VNKQGQTRL+ Y  ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV  DD+             +NEL +LEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct:    1 MIKFVLMVNKQGQTRLAQYVDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGVLEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGCIVETNKVSILKPIHLMEKSS 144          
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|299472950|emb|CBN77351.1| (Clathrin assembly complex, small subunit [Ectocarpus siliculosus])

HSP 1 Score: 229.565 bits (584), Expect = 9.776e-75
Identity = 108/169 (63.91%), Postives = 133/169 (78.70%), Query Frame = 0
Query:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFI--VGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRR 167
            MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRRYASLFFI  VGV+ DD              ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HFI+DEMV+NG+I + N+ N+LKP+ LM+ +S + +S+F  +
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDD--------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSK 155          
The following BLAST results are available for this feature:
BLAST of EWM30223.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196559|ref|XP_005856373.1|3.254e-121100.00AP-4 complex subunit sigma-1 [Nannochloropsis gadi... [more]
gi|676384465|ref|XP_009035511.1|1.458e-8274.10hypothetical protein AURANDRAFT_24131 [Aureococcus... [more]
gi|325180077|emb|CCA14478.1|1.298e-7974.52AP4 complex subunit sigma putative [Albugo laibach... [more]
gi|301112128|ref|XP_002905143.1|1.803e-7974.52AP-4 complex subunit sigma, putative [Phytophthora... [more]
gi|673038156|ref|XP_008873039.1|8.265e-7771.97AP-4 complex subunit sigma [Aphanomyces invadans] ... [more]
gi|698818743|ref|XP_009842400.1|1.111e-7671.34AP-4 complex subunit sigma [Aphanomyces astaci] >g... [more]
gi|873232487|emb|CEM05376.1|1.199e-7573.25unnamed protein product [Vitrella brassicaformis C... [more]
gi|1173940526|gb|OQR89916.1|3.179e-7571.34AP-4 complex subunit sigma [Thraustotheca clavata]... [more]
gi|669171317|ref|XP_008621007.1|4.666e-7570.70AP-4 complex subunit sigma [Saprolegnia diclina VS... [more]
gi|299472950|emb|CBN77351.1|9.776e-7563.91Clathrin assembly complex, small subunit [Ectocarp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna354rna354Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications