EWM30223.1, cds354 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|553196559|ref|XP_005856373.1| (AP-4 complex subunit sigma-1 [Nannochloropsis gaditana CCMP526] >gi|422292687|gb|EKU19989.1| AP-4 complex subunit sigma-1 [Nannochloropsis gaditana CCMP526] >gi|585112882|gb|EWM30223.1| ap-4 complex subunit sigma [Nannochloropsis gaditana]) HSP 1 Score: 347.436 bits (890), Expect = 3.254e-121 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRRG 168
MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRRG
Sbjct: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRRG 168
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|676384465|ref|XP_009035511.1| (hypothetical protein AURANDRAFT_24131 [Aureococcus anophagefferens] >gi|323453572|gb|EGB09443.1| hypothetical protein AURANDRAFT_24131 [Aureococcus anophagefferens]) HSP 1 Score: 249.21 bits (635), Expect = 1.458e-82 Identity = 123/166 (74.10%), Postives = 137/166 (82.53%), Query Frame = 0
Query: 2 IRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRR 167
IRFIL VNKQGQTRLS+YY W+ +PERVALE+EIIRKCLSRSE QC F+EYRG+KV+YRRYASLFFIVG E D ENEL ILEFIHALVETLDKYFESVCELDIMFNLEKAHFI+DEMV+NG IV+ NK N+LKPI LMEK ASEE++FS+R
Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGCEQDS--------------ENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEK--ASEETLFSKR 152
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|325180077|emb|CCA14478.1| (AP4 complex subunit sigma putative [Albugo laibachii Nc14]) HSP 1 Score: 241.506 bits (615), Expect = 1.298e-79 Identity = 117/157 (74.52%), Postives = 134/157 (85.35%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
MI+F+L VNKQGQTRL+ YY ++SI ERVALEAEIIRKCLSR+E QC F+EYRG+KVIYRRYASLFFIVGV+ DD+ ENEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEMV+NG IV++NK +ILKPIHLMEK+S
Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQNDDS-------------ENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEKSS 144
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|301112128|ref|XP_002905143.1| (AP-4 complex subunit sigma, putative [Phytophthora infestans T30-4] >gi|675174951|ref|XP_008896360.1| AP-4 complex subunit sigma [Phytophthora parasitica INRA-310] >gi|675174957|ref|XP_008896363.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica INRA-310] >gi|695396096|ref|XP_009521354.1| hypothetical protein PHYSODRAFT_555587 [Phytophthora sojae] >gi|262095473|gb|EEY53525.1| AP-4 complex subunit sigma, putative [Phytophthora infestans T30-4] >gi|348686251|gb|EGZ26066.1| hypothetical protein PHYSODRAFT_555587 [Phytophthora sojae] >gi|566012957|gb|ETI35868.1| AP-4 complex subunit sigma [Phytophthora parasitica P1569] >gi|566012958|gb|ETI35869.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica P1569] >gi|567950419|gb|ETK76131.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|567950420|gb|ETK76132.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|567979095|gb|ETL29577.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|567979096|gb|ETL29578.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|568008557|gb|ETL82774.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|568008558|gb|ETL82775.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|568038500|gb|ETM36029.1| AP-4 complex subunit sigma [Phytophthora parasitica] >gi|568038501|gb|ETM36030.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica] >gi|568104074|gb|ETN18731.1| AP-4 complex subunit sigma [Phytophthora parasitica INRA-310] >gi|568104075|gb|ETN18732.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica INRA-310] >gi|570316632|gb|ETO64580.1| AP-4 complex subunit sigma [Phytophthora parasitica P1976] >gi|570316633|gb|ETO64581.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica P1976] >gi|570940422|gb|ETP05679.1| AP-4 complex subunit sigma [Phytophthora parasitica CJ01A1] >gi|570940423|gb|ETP05680.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica CJ01A1] >gi|570970690|gb|ETP33809.1| AP-4 complex subunit sigma [Phytophthora parasitica P10297] >gi|570970691|gb|ETP33810.1| AP-4 complex subunit sigma, variant 1 [Phytophthora parasitica P10297]) HSP 1 Score: 241.121 bits (614), Expect = 1.803e-79 Identity = 117/157 (74.52%), Postives = 133/157 (84.71%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
MI+F+L VNKQGQTRL+ YY ++SI ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV+ DD+ ENEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEMV+NG+IV+ NK +ILKPIHLMEKAS
Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLGRNETQCSFVEYRGYKVIYRRYASLFFIVGVKDDDS-------------ENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGYIVETNKISILKPIHLMEKAS 144
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|673038156|ref|XP_008873039.1| (AP-4 complex subunit sigma [Aphanomyces invadans] >gi|574471156|gb|ETV98164.1| AP-4 complex subunit sigma [Aphanomyces invadans]) HSP 1 Score: 234.572 bits (597), Expect = 8.265e-77 Identity = 113/157 (71.97%), Postives = 130/157 (82.80%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
MI+F+L VNKQGQTRL+ YY ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV DD+ +NEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGQIVETNKLSILKPIHLMEKSS 144
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|698818743|ref|XP_009842400.1| (AP-4 complex subunit sigma [Aphanomyces astaci] >gi|574102551|gb|ETV68101.1| AP-4 complex subunit sigma [Aphanomyces astaci]) HSP 1 Score: 234.187 bits (596), Expect = 1.111e-76 Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
MI+F+L VNKQGQTRL+ YY ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV DD+ +NEL +LEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGVLEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGQIVETNKLSILKPIHLMEKSS 144
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|873232487|emb|CEM05376.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 231.491 bits (589), Expect = 1.199e-75 Identity = 115/157 (73.25%), Postives = 131/157 (83.44%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
MI+FIL VNKQGQTRLS YY ++SIPERVALE E+IRKCLSR+ELQC F+EYR +KVIYRRYASL+FIVGV D+ G ENEL+ILEFIH LVETLDKYFE+VCELDIMFNLEKAHFI+DEMV+NG I++ NKTNIL I+LMEKAS
Sbjct: 1 MIKFILLVNKQGQTRLSQYYDYLSIPERVALEGELIRKCLSRTELQCSFMEYRQYKVIYRRYASLYFIVGV---DSEG-----------ENELSILEFIHTLVETLDKYFENVCELDIMFNLEKAHFILDEMVVNGCILETNKTNILGSIYLMEKAS 143
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|1173940526|gb|OQR89916.1| (AP-4 complex subunit sigma [Thraustotheca clavata] >gi|1173953410|gb|OQS00955.1| AP-4 complex subunit sigma [Achlya hypogyna]) HSP 1 Score: 230.335 bits (586), Expect = 3.179e-75 Identity = 112/157 (71.34%), Postives = 129/157 (82.17%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
MI+F+L VNKQGQTRL+ Y ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV DD+ +NEL ILEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct: 1 MIKFVLMVNKQGQTRLAQYVDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGCIVETNKVSILKPIHLMEKSS 144
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|669171317|ref|XP_008621007.1| (AP-4 complex subunit sigma [Saprolegnia diclina VS20] >gi|813151125|ref|XP_012201154.1| AP-4 complex subunit sigma [Saprolegnia parasitica CBS 223.65] >gi|530727309|gb|EQC25551.1| AP-4 complex subunit sigma [Saprolegnia diclina VS20] >gi|641534057|gb|KDO28016.1| AP-4 complex subunit sigma [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 229.95 bits (585), Expect = 4.666e-75 Identity = 111/157 (70.70%), Postives = 129/157 (82.17%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKAS 157
MI+F+L VNKQGQTRL+ Y ++ I ERVALEAEIIRKCL R+E QC F+EYRG+KVIYRRYASLFFIVGV DD+ +NEL +LEFIHALVET+DKYFESVCELDIMFNLEKAHFI+DEM++NG IV+ NK +ILKPIHLMEK+S
Sbjct: 1 MIKFVLMVNKQGQTRLAQYVDFLPIAERVALEAEIIRKCLGRNENQCSFVEYRGYKVIYRRYASLFFIVGVNNDDS-------------DNELGVLEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMIMNGCIVETNKVSILKPIHLMEKSS 144
BLAST of EWM30223.1 vs. NCBI_GenBank
Match: gi|299472950|emb|CBN77351.1| (Clathrin assembly complex, small subunit [Ectocarpus siliculosus]) HSP 1 Score: 229.565 bits (584), Expect = 9.776e-75 Identity = 108/169 (63.91%), Postives = 133/169 (78.70%), Query Frame = 0
Query: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFI--VGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSRR 167
MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRRYASLFFI VGV+ DD ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HFI+DEMV+NG+I + N+ N+LKP+ LM+ +S + +S+F +
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDD--------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSK 155 The following BLAST results are available for this feature:
BLAST of EWM30223.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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