rna337, rna337 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna337
Unique Name	rna337
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1491
Alignment location	CM002455.1:832161..834782 +

Link to JBrowse

Properties


Property Name	Value
Product	elongation factor 2
Orig transcript id	gnl\|cribi\|Naga_100003g160.1798.mrna
Orig protein id	gnl\|cribi\|Naga_100003g160.1798
Gene	EF2
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:832161..834782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EF2	gene325	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna337	rna337-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30281.1	cds337	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:832161..834782+
coding sequence from alignment at CM002455.1:832161..834782+

mRNA sequence

>rna337 ID=rna337|Name=rna337|organism=Nannochloropsis gaditana|type=mRNA|length=1491bp
ATGATGTGGCGACTGACTCGGGCCACAAAGCTTCACAAGCTGCTCGTTCC
CGCGGCCGGAGCCTCTGGCCGTGGTCACGGCCGGGGTTTGGCCTCGAGCG
CCAACAGACTCGTGGATTTGGACGAGGAATACCCTGATCTTCCCGCTTTG
AATCCCAGTGTCGCGAGCCCTTTCAATGTTGAAACGAGCACGCTGTCTAA
TGGAGTAAAAGTGGTGTCCACATTAGCAGGCAAGACGACATCCGTGGGGC
TATCAGTGGCTGCAGGTAGCCTCTTCGAGGTTCCCGGTGAGGAAGGCTCC
GCCTTACTTCTTCAGCATTTAGCGTTCAAGGGTACCAGCAAGCGCTCGGC
CTTACGCCTACTTCGAGATCTTGAAAGCGTGGGGGCCGCGCCCTCGGCGC
TGGCAGGACGTGAATCTCTGTTGTACAAGGTAACTGCCTTGCCCGAGTAC
GCCGAGTCGGCCCTAGAGGCCGCTTTCGAGACGGCTCTCTCGCCCAAGAT
CACGCCTTACCTCGTTTCAGAACTTCAAACTGCAGCTGCTGCAGACATGG
AGACGTTTGCCGCGGATGCACGCCTCCAGCTCGGGGAGGCCCTGTACGAG
GCCGCCTACGGAGAGAACACCCCTCTTGGCCATCCCCTCTACCACCTCGG
CTCCCAGCTGACAGCGGGGTCCCTCGCCGCGTACCGGGCAAAAACGTACG
GGGCCAACTTCATCACTGTCTTCGGGACTGGGGTCGCCCATGCGCAGCTC
GCGTCCTGGGCGACAAGACTCGCGGACGGTTTGGCTCCCGGCAGCAGCAA
AGCGGCGCCGGCGTCGCCCTATATCGGGGGAGAGGCGCGTCTGAAGGCTA
CCTCGGATTCTACATTTGTGGGTTTAGCTCTCTGTGCGCCAGACAGGAAG
GATGCTGGGGTCTTGGAGGTGCTAGCGGCGGCATGGCAATCAGCATTGCC
TGCCGGCGCGGCTGTTTTTACCTTGCCAGGCTTGGTTGGGGTGACGGGCG
CGGCCTCTCCCACCGCGGTGGGGTCTTACGTAGACGCCTTGTTTCAAGTT
GTGAAAGGCACCGGGAAAGACTTTGCCACAGCCAAGAAAGCGGCCCAAGT
AGCGGCGCTGACCAAGCTCGACGGATCTGTTTTTGAGGGGTTGGCGGACG
GGAGGGCCAGCCTGACATCTGGAAAGGAGGCCTCACTATTGCATCGCTGG
GGGACGTCAGCAAGGTTCCCAAGCTCTCGAGTCTCCACTAAGTTCGGGAA
GGAGGTGGTGGTCGCAAAGTACGAAGTGAGGTTTTCTACGTTCGATAAAG
GACCACATCGGTGGTATATTTTGAGGTTGTCCGATGCGATGCGCCTTCTC
TCAATTCTGATGAGCTATGCGTGGTATTTAAGGCGATATCAAGCAAAAGA
GACTGAAGGCGTATGTGTGGAAGAGACTGTTGGCTGTGTCCGCGCTGCCT
GGGCCCTCGTCAAAAATGACTCTCATGCAGACATGAACTAA

protein sequence of rna337

>rna337-protein ID=rna337-protein|Name=rna337|organism=Nannochloropsis gaditana|type=polypeptide|length=873bp
MVNFTVDQLRAMMDLKHNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAKN
AGDARFTDTRADEQERCITIKSTGISMFFEYDMDAGEKLAQAAAEAQLTG
EKADAGASSANSSAITTAAAANVEINDKCFLINLIDSPGHVDFSSEVTAA
LRVTDGALVVVDCIEGVCVQTETVLRQAISERVRPVLMVNKVDRALLELQ
LPPEEMYQSFSRAIESVNVIIATYNDALMGDVQVYPEKGTVAFGSGLHQW
GFTLKKFARTYAAKFNTDESSFMQKLWGDWFYDQEAKKWKTQSENGTLKR
AFCQFIMDPICKVFEAVMEDKTAKIEKMLKVIGVTLKGDDKELKGKPLLK
RIMQKWIPAADAILEMIVVHLPSPVAAQKYRVDNLYDGPLDDETANAIRT
CDTGPDAPLCMYVSKMVPTSDKGRFYAFGRVFAGRIATGQKCRILGPNYV
PGKKTDLWVKNIQRTIVMMGRYVEQVQDVPAGNTCGLVGVDQYLLKSGTI
TTAENAHCIKTMKFSVSPVVRVAVEPKNSSDLPKLVEGMKRLAKSDPMVL
CYTEESGEHIIAGAGELHLEICLKDLQEDFMGTEVKISDPVVSYRETVTG
VSSQTCLSKSPNKHNRLYATAEPLADGLPDEIEDGKVNARDDFKLRARYL
ADTHGWDVTEARKIWAFAPDGTGPNIVLDATKGVNYLNEIKESVVGGFQQ
ACGQGPMADEQVRGVCVKLLDVVLHADAIHRGMGQIQPTARRVVHACILT
ASPGVLEPVYLCEISCPQDAMGGCYGVLTRRRGHVFSEEQRPGTPMMTLK
AYLPVMESFGFTADLRAGTGGKAFPQCVFDHWQMMGGDPLEAGTKSNEVM
LGVRKRKGLSPEIPPLDRFLDRL

mRNA from alignment at CM002455.1:832161..834782+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna337 ID=rna337|Name=rna337|organism=Nannochloropsis gaditana|type=mRNA|length=2622bp|location=Sequence derived from alignment at CM002455.1:832161..834782+ (Nannochloropsis gaditana)
ATGGTTAATTTCACGGTCGACCAGCTGAGGGCCATGATGGACCTGAAGCA
CAACATTCGAAACATGTCGGTGATCGCGCACGTGGACCACGGAAAATCCA
CTCTTACGGACTCCCTCGTTTCCAAGGCTGGCATTATCGCGGCGAAGAAT
GCTGGAGATGCTCGCTTCACTGACACCCGCGCTGATGAGCAGGAGCGCTG
CATCACAATCAAGTCAACCGGAATTTCCATGTTCTTCGAGTACGACATgg
acgcgggggagaagcTCGCCCAGGCTGCGGCCGAGGCGCAGCTTACCGGT
GAGAAGGCCGATGCAGGGGCCAGCTCTGCCAATTCTTCAGCTATTACCAC
CGCCGCGGCGGCGAACGTGGAAATTAACGACAAATGCTTTCTGATCAACC
TCATCGACTCCCCGGGACACGTGGACTTCTCTTCCGAGGTGACGGCCGCG
CTCCGTGTGACGGATGGAGCCTTGGTTGTGGTTGATTGCATCGAAGGTGT
CTGCGTGCAAACCGAGACTGTGCTTCGCCAGGCTATCTCAGAGCGCGTGC
GCCCCGTGCTTATGGTGAACAAAGTGGACCGAGCCCTCCTTGAACTTCAG
CTTCCCCCCGAGGAGATGTATCAATCTTTCTCTCGCGCAATTGAGTCGGT
GAACGTGATTATCGCCACTTACAATGACGCACTGATGGGTGACGTGCAGG
TCTATCCCGAGAAGGGCACTGTCGCTTTCGGGTCGGGCTTGCACCAGTGG
GGCTTCACCCTGAAGAAGTTCGCGCGCACCTACGCCGCCAAGTTCAACAC
TGATGAGAGTTCCTTCATGCAGAAGCTCTGGGGCGACTGGTTTTACGAcc
aggaggcgaagaagtGGAAGACTCAGAGTGAGAACGGCACCCTGAAGCGC
GCCTTCTGTCAGTTCATTATGGACCCCATCTGCAAGGTCTTCGAGGCCGT
GATGGAGGACAAGACGGCCAAGATCGAGAAGATGCTGAAGGTGATCGGCG
TCACCCTGAAAGGTGATGACAAGGAGCTGAAGGGGAAACCCCTTCTCAAG
CGCATTATGCAGAAGTGGATCCCGGCCGCCGACGCCATTCTGGAGATGAT
TGTCGTTCATCTGCCCTCCCCTGTCGCCGCCCAGAAGTACCGCGTGGACA
ACCTGTATGACGGGCCCCTGGACGACGAGACGGCCAACGCCATCCGCACC
TGCGACACGGGCCCGGACGCGCCTCTCTGCATGTACGTGTCCAAGATGGT
GCCCACCTCGGACAAGGGCCGCTTCTACGCCTTCGGGCGCGTCTTCGCGG
GGCGCATTGCAACGGGCCAGAAGTGCCGCATTCTGGGCCCCAACTACGTT
CCCGGAAAAAAAACTGACCTGTGGGTGAAGAACATCCAGCGCACTATCGT
CATGATGGGGCGCTACGTCGAGCAGGTGCAGGACGTGCCTGCCGGAAACA
CGTGCGGTCTGGTGGGCGTGGACCAGTACTTGCTCAAGTCGGGGACCATC
ACCACCGCAGAGAACGCGCACTGTATCAAGACCATGAAGTTCTCGGTATC
TCCTGTGGTGCGCGTGGCCGTGGAGCCCAAGAACAGCTCGGACCTCCCCA
AGCTGGTTGAGGGCATGAAACGCCTGGCCAAATCGGACCCCATGGTCCTC
TGCTACACAGAGGAGTCCGGCGAGCACATCATTGCCGGAGCAGGGGAACT
CCATTTGGAGATTTGTTTGAAGGACCTTCAAGAGGATTTCATGGGGACGG
AGGTGAAGATCTCTGACCCGGTCGTCTCGTACCGCGAGACGGTCACCGGC
GTCTCGAGCCAGACTTGCCTGTCCAAGTCACCCAACAAGCACAACCGCCT
TTACGCCACGGCCGAGCCCCTCGCCGACGGCCTTCCCGACGAGATCGAGG
ACGGCAAAGTCAACGCGCGCGACGATTTCAAACTGCGGGCGCGGTATCTG
GCGGATACTCACGGATGGGACGTCACGGAGGCCCGTAAGATCTGGGCCTT
CGCCCCCGACGGGACCGGGCCCAACATCGTTCTCGACGCCACCAAGGGTG
TGAATTACTTGAACGAGATCAAGGAGTCGGTAGTAGGAGGGTTTCAGCAG
GCGTGCGGGCAGGGTCCCATGGCGGACGAGCAGGTCCGTGGCGTCTGCGT
CAAGCTGCTGGACGTGGTCCTCCACGCCGACGCCATCCACCGTGGCATGG
GCCAGATTCAGCCAACGGCCCGCCGTGTCGTGCATGCTTGTATCTTGACG
GCGTCTCCTGGAGTGTTGGAGCCTGTTTATCTCTGCGAGATTTCCTGTCC
GCAGGACGCCATGGGAGGTTGCTATGGCGTACTGACACGTCGTCGTGGTC
ATGTCTTTTCCGAGGAGCAGCGGCCTGGCACGCCTATGATGACACTGAAG
GCGTATCTGCCTGTGATGGAATCGTTCGGCTTCACTGCTGATCTTCGAGC
CGGCACAGGGGGCAAGGCCTTCCCGCAGTGCGTGTTCGACCACTGGCAGA
TGATGGGGGGAGATCCGCTCGAGGCAGGCACCAAGTCGAACGAGGTTATG
CTTGGTGTCCGTAAGCGCAAGGGTCTTTCGCCCGAAATTCCCCCGCTGGA
TAGGTTTCTCGATCGACTCTAA

Coding sequence (CDS) from alignment at CM002455.1:832161..834782+

>rna337 ID=rna337|Name=rna337|organism=Nannochloropsis gaditana|type=CDS|length=2622bp|location=Sequence derived from alignment at CM002455.1:832161..834782+ (Nannochloropsis gaditana)
ATGGTTAATTTCACGGTCGACCAGCTGAGGGCCATGATGGACCTGAAGCA
CAACATTCGAAACATGTCGGTGATCGCGCACGTGGACCACGGAAAATCCA
CTCTTACGGACTCCCTCGTTTCCAAGGCTGGCATTATCGCGGCGAAGAAT
GCTGGAGATGCTCGCTTCACTGACACCCGCGCTGATGAGCAGGAGCGCTG
CATCACAATCAAGTCAACCGGAATTTCCATGTTCTTCGAGTACGACATgg
acgcgggggagaagcTCGCCCAGGCTGCGGCCGAGGCGCAGCTTACCGGT
GAGAAGGCCGATGCAGGGGCCAGCTCTGCCAATTCTTCAGCTATTACCAC
CGCCGCGGCGGCGAACGTGGAAATTAACGACAAATGCTTTCTGATCAACC
TCATCGACTCCCCGGGACACGTGGACTTCTCTTCCGAGGTGACGGCCGCG
CTCCGTGTGACGGATGGAGCCTTGGTTGTGGTTGATTGCATCGAAGGTGT
CTGCGTGCAAACCGAGACTGTGCTTCGCCAGGCTATCTCAGAGCGCGTGC
GCCCCGTGCTTATGGTGAACAAAGTGGACCGAGCCCTCCTTGAACTTCAG
CTTCCCCCCGAGGAGATGTATCAATCTTTCTCTCGCGCAATTGAGTCGGT
GAACGTGATTATCGCCACTTACAATGACGCACTGATGGGTGACGTGCAGG
TCTATCCCGAGAAGGGCACTGTCGCTTTCGGGTCGGGCTTGCACCAGTGG
GGCTTCACCCTGAAGAAGTTCGCGCGCACCTACGCCGCCAAGTTCAACAC
TGATGAGAGTTCCTTCATGCAGAAGCTCTGGGGCGACTGGTTTTACGAcc
aggaggcgaagaagtGGAAGACTCAGAGTGAGAACGGCACCCTGAAGCGC
GCCTTCTGTCAGTTCATTATGGACCCCATCTGCAAGGTCTTCGAGGCCGT
GATGGAGGACAAGACGGCCAAGATCGAGAAGATGCTGAAGGTGATCGGCG
TCACCCTGAAAGGTGATGACAAGGAGCTGAAGGGGAAACCCCTTCTCAAG
CGCATTATGCAGAAGTGGATCCCGGCCGCCGACGCCATTCTGGAGATGAT
TGTCGTTCATCTGCCCTCCCCTGTCGCCGCCCAGAAGTACCGCGTGGACA
ACCTGTATGACGGGCCCCTGGACGACGAGACGGCCAACGCCATCCGCACC
TGCGACACGGGCCCGGACGCGCCTCTCTGCATGTACGTGTCCAAGATGGT
GCCCACCTCGGACAAGGGCCGCTTCTACGCCTTCGGGCGCGTCTTCGCGG
GGCGCATTGCAACGGGCCAGAAGTGCCGCATTCTGGGCCCCAACTACGTT
CCCGGAAAAAAAACTGACCTGTGGGTGAAGAACATCCAGCGCACTATCGT
CATGATGGGGCGCTACGTCGAGCAGGTGCAGGACGTGCCTGCCGGAAACA
CGTGCGGTCTGGTGGGCGTGGACCAGTACTTGCTCAAGTCGGGGACCATC
ACCACCGCAGAGAACGCGCACTGTATCAAGACCATGAAGTTCTCGGTATC
TCCTGTGGTGCGCGTGGCCGTGGAGCCCAAGAACAGCTCGGACCTCCCCA
AGCTGGTTGAGGGCATGAAACGCCTGGCCAAATCGGACCCCATGGTCCTC
TGCTACACAGAGGAGTCCGGCGAGCACATCATTGCCGGAGCAGGGGAACT
CCATTTGGAGATTTGTTTGAAGGACCTTCAAGAGGATTTCATGGGGACGG
AGGTGAAGATCTCTGACCCGGTCGTCTCGTACCGCGAGACGGTCACCGGC
GTCTCGAGCCAGACTTGCCTGTCCAAGTCACCCAACAAGCACAACCGCCT
TTACGCCACGGCCGAGCCCCTCGCCGACGGCCTTCCCGACGAGATCGAGG
ACGGCAAAGTCAACGCGCGCGACGATTTCAAACTGCGGGCGCGGTATCTG
GCGGATACTCACGGATGGGACGTCACGGAGGCCCGTAAGATCTGGGCCTT
CGCCCCCGACGGGACCGGGCCCAACATCGTTCTCGACGCCACCAAGGGTG
TGAATTACTTGAACGAGATCAAGGAGTCGGTAGTAGGAGGGTTTCAGCAG
GCGTGCGGGCAGGGTCCCATGGCGGACGAGCAGGTCCGTGGCGTCTGCGT
CAAGCTGCTGGACGTGGTCCTCCACGCCGACGCCATCCACCGTGGCATGG
GCCAGATTCAGCCAACGGCCCGCCGTGTCGTGCATGCTTGTATCTTGACG
GCGTCTCCTGGAGTGTTGGAGCCTGTTTATCTCTGCGAGATTTCCTGTCC
GCAGGACGCCATGGGAGGTTGCTATGGCGTACTGACACGTCGTCGTGGTC
ATGTCTTTTCCGAGGAGCAGCGGCCTGGCACGCCTATGATGACACTGAAG
GCGTATCTGCCTGTGATGGAATCGTTCGGCTTCACTGCTGATCTTCGAGC
CGGCACAGGGGGCAAGGCCTTCCCGCAGTGCGTGTTCGACCACTGGCAGA
TGATGGGGGGAGATCCGCTCGAGGCAGGCACCAAGTCGAACGAGGTTATG
CTTGGTGTCCGTAAGCGCAAGGGTCTTTCGCCCGAAATTCCCCCGCTGGA
TAGGTTTCTCGATCGACTCTAA

Synonyms

Publications