rna286, rna286 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna286
Unique Name	rna286
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1047
Alignment location	CM002455.1:713638..715663 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF2046
Orig transcript id	gnl\|cribi\|Naga_100026g30.10657.mrna
Orig protein id	gnl\|cribi\|Naga_100026g30.10657
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:713638..715663 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g30	gene275	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna286	rna286-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30403.1	cds286	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:713638..715663+
coding sequence from alignment at CM002455.1:713638..715663+

mRNA sequence

>rna286 ID=rna286|Name=rna286|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp
ATGCCAGCGACACCAGAGGAGATTCAAGAAAAGCTGAGTAAAGACCTGAA
TGATTTGATCACTCCAGAGGATGAGGCGCCGGGAGACAGGCATCATCGCA
ATGGTCCCCGTCGAGAAGATAGAGGCGGCCGTGCGTTTCGAGGCTGGCAG
GTGCCGGGGGATGGATTCGGGCATGAAGGTCCTGTACTTGATTTCGGGCA
CCCCTCTGCCTTTGCACCCCCTCCCCTCATGCATCGTATGCCGCCCGGAT
TTGTGGAGTACAGGAACGCCGCTCTTCCCGGCGGACGAGGGGGGCACCCC
TGGCAGGACGGGGGCCCTCGGCGGCCTCCAGCCCAGCCAGGGCAGCAGTT
TGTCGTGCGGTCGGCGCCGGGAGCCCGAAAACCCGGCAGTGTCAGGTTAT
TCTACGTGTGGTCGGCAGACGGGAAGGAGCTGCGTGTGGAGCATCAGCAT
CAAGAGCTGCTCCTCATCACGGCGGCGGGGACTTTGAGGCTCAATGCGGG
GGGGCGACCCCGGTCCAGAGAAACCCTGCTGGGTCTGAATGTGGTGGTGT
CTCTGTTGGGGATGGAAGTAGTGCAGGAGGAAGGGGCAGAGGAGGGGCAA
GCTCAGGGGTCGTGGAAGGTCCGGAAGGGCAGCTGGTCGCAGGCATTCGC
GGAGGGCATGACGGTCTCAGCCTTCGCCTCGCGGGAGTGGCCCAAGATCC
AGGCGCTTTTGACCAGACTCCCGCGAGACGTGACGCGCGAGGACATCGTC
TTGGTCCCGCCACCACCTGTCCCGACGGGCCCGGCTCTGCTCGGAAAGCG
CGAGGCAGTGGAGGGGGGGGGGGCGGGGGCTGTCCGGGGGGGCCGCGGGA
GGGGGAGAGGGCGGGGCGTGAATCTGTGGGCGGGGTCGAACAAGTGGGTG
CGGACGGAGGACGCGGGTAATGTTTGCTAGGGTTGCTCGGATGGGGGGGG
CGGGGAGCGATGGAGGGAGGAAGATCAGGTAAGGTCTCGACAGACTAGAG
AAGCACGAGTGCAGGTATAAGAAACAGCAAAAAAAAGTAATGGGCCC

protein sequence of rna286

>rna286-protein ID=rna286-protein|Name=rna286|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MQPPLSPTSTASPVQDFAYWKQKAVQLENELVALKERSIKMFCRTEAEEE
GIINKLINRLEELKKEKEHLAVEVEREEEMISNTLQKKLTKLQQEKVDQE
NQLEAEQEAIVNKLGAEISKLRKEKETLMTEIEREEEHLTNNLSRKLTRE
RAEKEALEARLLSERKQVLESRALLKEDACLITQLKAAVEPLKDEGALKL
KDRESILQVSERLINRLSVIESATSDKEEDEESKEGTDSISSIGATAGGG
SSRGSSIAGGSDV

mRNA from alignment at CM002455.1:713638..715663+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna286 ID=rna286|Name=rna286|organism=Nannochloropsis gaditana|type=mRNA|length=2026bp|location=Sequence derived from alignment at CM002455.1:713638..715663+ (Nannochloropsis gaditana)
CTCACACTCGCAAACCGTGGACGGGGTGGCTgaccgggggcgggaggtcg
gCTTGCTCTTTCTCGCCATGCCGTCACGCGCATGACCTTGGCCTTCCGTA
AGGCTTTAAGTCCCAGCAGCCGGCCAACCAGTGGTGCCCACGCCGAGCGG
TGGCGAGTAGACCAATTATTGCGGTGTGCAGGCTACGGTGACTTTGTTCG
AAACAGTGCTCACATCACAGCACCCACTCCAGAGACAGGGTAGAAGGAGC
GGCGACGGCACGCTAGTAGCATAATGCAGCCGCCTCTGTCACCCACTTCC
ACCGCGAGTCCGGTCCAAGACTTCGCATATTGGAAGCAGAAGGCAGTCCA
GCTCGAGAATGAGGTGAGGATAGAGCAAGTGGACAGGGTCCTTGACGGAT
CTTAGTGCTGACATTTGTGCCATACCCGTAGTTGGTTGCATTGAAGGAGC
GCTCCATCAAAATGTTTTGCCGGacggaggctgaggaggaaggtatcATC
AACAAGCTGATAAACCGCTTGGAAGAGCtcaagaaagagaaggagcaccT
GGCTGTAGAGGTCgagcgagaagaagaggtacgggggggggcgcacgAGC
CGAGAGGAGACGGCAGGGACTTTTGTGTTGGATTCGAGCGCTGTCATACC
CTCATCTGTGTGTCCTGCTCTCTCGATGTATCACCTTAAGGCGCATCGTT
GCGAAATACTTGAATGCGACCGATTTCAAATGCCTACCTGGCAAGACCAC
GCGCGTTTTACGCCACTTTCATGTTGAATGTTTGTTGACACCTTAAACCA
AGCGCATCCCTCGTCTGTGTATTCATTCCGAACAGATGATATCCAACACG
CTTCAAAAGAAGCTCACTAAATTGCAGCAAGAAAAAGTAGACCAGGAGAA
CCagctggaggcagagcagGAGGCCATCGTCAACAAACTCGGGTACGCCA
GTAGCGCCACCGTTCCTTGATTTGCCGTACTGACAGCCATCCTTTTGCCC
TCGTGGAACAATCACAGTGCGGAGATTTCGAAGCTgcgcaaagaaaagga
gacccTAATGACCGAAATagagcgggaagaagaacatCTGACCAACAATC
TCTCTCGCAAACTGACGAGAGAGCgcgcggagaaagaggcattGGAAGCC
CGGCTGCTGTCGGAACGGAAGCAAGTGCGTTTGTGTGAAAATCCGAAGAT
CTCACATAGGTGGTTTACATTTGTGCTCTGACAATCAGTGCTAAACATTT
CCTCTTATTTTGTGCAGGTGCTGGAGTCGAGGGCATtgttgaaggaggat
gcCTGTCTGATAACACAGCTGAAGGCCGCCGTGGAGCCGCTAAAAGACGA
GGGCGCCCTAAAGCTTAAGGACAGGGAATCCATTTTACAAGTGCGTACAT
GGGAGGAAACATGTTCCCATGGAAGACATACTCATGACACGACCTGCTGC
ACAAAATTCAGGTGTCAGAGCGCCTCATAAATCGCCTCTCGGTAATAGAG
AGCGCAACGAgcgacaaagaggaagacgaggaaagcaaggaagggacaga
CAGTATCAGCAGCATCGGAGCCACTGCAGGCGGTGGTAGCAGTCGTGGCA
GCAGCATTGCGGGCGGAAGCGATGTataaagggaaggagacaaaagcGTT
TGAAACAAGCCATAGGGAATTTCACCTTTGTATTTTGATATTGTGACATT
GATACTTATTGTGACATTGATACTTATAAATCGAAAGATCTGTCCACGGT
AGCTTTGAAGGCGATGTGTGCATGTATACTTCCGCACATCATCCATTGAG
TTGTTGCTTGTCAGAGGTGAAAACTTGCTCTCAGAGTGTCCCATTTTGCT
TTGAAACTTTCTCCCCAGCAAAACCTCTTCAACTTGTCATAGAATGGTGA
ACAATTTAGAATGAATGAATCACTGTTCTGTTCAAGCTCGCAATTGATGG
CCAGGCGGTGACAAAAGAGCGTTTTGCACACACTCACGTTGAAGACATTG
AGAAGGGGGTCATCAGGGACAAAACA

Coding sequence (CDS) from alignment at CM002455.1:713638..715663+

>rna286 ID=rna286|Name=rna286|organism=Nannochloropsis gaditana|type=CDS|length=4752bp|location=Sequence derived from alignment at CM002455.1:713638..715663+ (Nannochloropsis gaditana)
ATGCAGCCGCCTCTGTCACCCACTTCCACCGCGAGTCCGGTCCAAGACTT
CGCATATTGGAAGCAGAAGGCAGTCCAGCTCGAGAATGAGTTGGTTGCAT
TGAAGGAGCGCTCCATCAAAATGTTTTGCCGGacggaggctgaggaggaa
ggtatcATCAACAAGCTGATAAACCGCTTGGAAGAGCtcaagaaagagaa
ggagcaccTGGCTGTAGAGGTCgagcgagaagaagagATGATATCCAACA
CGCTTCAAAAGAAGCTCACTAAATTGCAGCAAGAAAAAGTAGACCAGGAG
AACCagctggaggcagagcagGAGGCCATCGTCAACAAACTCGGTGCGGA
GATTTCGAAGCTgcgcaaagaaaaggagacccTAATGACCGAAATagagc
gggaagaagaacatCTGACCAACAATCTCTCTCGCAAACTGACGAGAGAG
CgcgcggagaaagaggcattGGAAGCCCGGCTGCTGTCGGAACGGAAGCA
AGTGCTGGAGTCGAGGGCATtgttgaaggaggatgcCTGTCTGATAACAC
AGCTGAAGGCCGCCGTGGAGCCGCTAAAAGACGAGGGCGCCCTAAAGCTT
AAGGACAGGGAATCCATTTTACAAGTGTCAGAGCGCCTCATAAATCGCCT
CTCGGTAATAGAGAGCGCAACGAgcgacaaagaggaagacgaggaaagca
aggaagggacagaCAGTATCAGCAGCATCGGAGCCACTGCAGGCGGTGGT
AGCAGTCGTGGCAGCAGCATTGCGGGCGGAAGCGATGTataaATGCAGCC
GCCTCTGTCACCCACTTCCACCGCGAGTCCGGTCCAAGACTTCGCATATT
GGAAGCAGAAGGCAGTCCAGCTCGAGAATGAGTTGGTTGCATTGAAGGAG
CGCTCCATCAAAATGTTTTGCCGGacggaggctgaggaggaaggtatcAT
CAACAAGCTGATAAACCGCTTGGAAGAGCtcaagaaagagaaggagcacc
TGGCTGTAGAGGTCgagcgagaagaagagATGATATCCAACACGCTTCAA
AAGAAGCTCACTAAATTGCAGCAAGAAAAAGTAGACCAGGAGAACCagct
ggaggcagagcagGAGGCCATCGTCAACAAACTCGGTGCGGAGATTTCGA
AGCTgcgcaaagaaaaggagacccTAATGACCGAAATagagcgggaagaa
gaacatCTGACCAACAATCTCTCTCGCAAACTGACGAGAGAGCgcgcgga
gaaagaggcattGGAAGCCCGGCTGCTGTCGGAACGGAAGCAAGTGCTGG
AGTCGAGGGCATtgttgaaggaggatgcCTGTCTGATAACACAGCTGAAG
GCCGCCGTGGAGCCGCTAAAAGACGAGGGCGCCCTAAAGCTTAAGGACAG
GGAATCCATTTTACAAGTGTCAGAGCGCCTCATAAATCGCCTCTCGGTAA
TAGAGAGCGCAACGAgcgacaaagaggaagacgaggaaagcaaggaaggg
acagaCAGTATCAGCAGCATCGGAGCCACTGCAGGCGGTGGTAGCAGTCG
TGGCAGCAGCATTGCGGGCGGAAGCGATGTataaATGCAGCCGCCTCTGT
CACCCACTTCCACCGCGAGTCCGGTCCAAGACTTCGCATATTGGAAGCAG
AAGGCAGTCCAGCTCGAGAATGAGTTGGTTGCATTGAAGGAGCGCTCCAT
CAAAATGTTTTGCCGGacggaggctgaggaggaaggtatcATCAACAAGC
TGATAAACCGCTTGGAAGAGCtcaagaaagagaaggagcaccTGGCTGTA
GAGGTCgagcgagaagaagagATGATATCCAACACGCTTCAAAAGAAGCT
CACTAAATTGCAGCAAGAAAAAGTAGACCAGGAGAACCagctggaggcag
agcagGAGGCCATCGTCAACAAACTCGGTGCGGAGATTTCGAAGCTgcgc
aaagaaaaggagacccTAATGACCGAAATagagcgggaagaagaacatCT
GACCAACAATCTCTCTCGCAAACTGACGAGAGAGCgcgcggagaaagagg
cattGGAAGCCCGGCTGCTGTCGGAACGGAAGCAAGTGCTGGAGTCGAGG
GCATtgttgaaggaggatgcCTGTCTGATAACACAGCTGAAGGCCGCCGT
GGAGCCGCTAAAAGACGAGGGCGCCCTAAAGCTTAAGGACAGGGAATCCA
TTTTACAAGTGTCAGAGCGCCTCATAAATCGCCTCTCGGTAATAGAGAGC
GCAACGAgcgacaaagaggaagacgaggaaagcaaggaagggacagaCAG
TATCAGCAGCATCGGAGCCACTGCAGGCGGTGGTAGCAGTCGTGGCAGCA
GCATTGCGGGCGGAAGCGATGTataaATGCAGCCGCCTCTGTCACCCACT
TCCACCGCGAGTCCGGTCCAAGACTTCGCATATTGGAAGCAGAAGGCAGT
CCAGCTCGAGAATGAGTTGGTTGCATTGAAGGAGCGCTCCATCAAAATGT
TTTGCCGGacggaggctgaggaggaaggtatcATCAACAAGCTGATAAAC
CGCTTGGAAGAGCtcaagaaagagaaggagcaccTGGCTGTAGAGGTCga
gcgagaagaagagATGATATCCAACACGCTTCAAAAGAAGCTCACTAAAT
TGCAGCAAGAAAAAGTAGACCAGGAGAACCagctggaggcagagcagGAG
GCCATCGTCAACAAACTCGGTGCGGAGATTTCGAAGCTgcgcaaagaaaa
ggagacccTAATGACCGAAATagagcgggaagaagaacatCTGACCAACA
ATCTCTCTCGCAAACTGACGAGAGAGCgcgcggagaaagaggcattGGAA
GCCCGGCTGCTGTCGGAACGGAAGCAAGTGCTGGAGTCGAGGGCATtgtt
gaaggaggatgcCTGTCTGATAACACAGCTGAAGGCCGCCGTGGAGCCGC
TAAAAGACGAGGGCGCCCTAAAGCTTAAGGACAGGGAATCCATTTTACAA
GTGTCAGAGCGCCTCATAAATCGCCTCTCGGTAATAGAGAGCGCAACGAg
cgacaaagaggaagacgaggaaagcaaggaagggacagaCAGTATCAGCA
GCATCGGAGCCACTGCAGGCGGTGGTAGCAGTCGTGGCAGCAGCATTGCG
GGCGGAAGCGATGTataaATGCAGCCGCCTCTGTCACCCACTTCCACCGC
GAGTCCGGTCCAAGACTTCGCATATTGGAAGCAGAAGGCAGTCCAGCTCG
AGAATGAGTTGGTTGCATTGAAGGAGCGCTCCATCAAAATGTTTTGCCGG
acggaggctgaggaggaaggtatcATCAACAAGCTGATAAACCGCTTGGA
AGAGCtcaagaaagagaaggagcaccTGGCTGTAGAGGTCgagcgagaag
aagagATGATATCCAACACGCTTCAAAAGAAGCTCACTAAATTGCAGCAA
GAAAAAGTAGACCAGGAGAACCagctggaggcagagcagGAGGCCATCGT
CAACAAACTCGGTGCGGAGATTTCGAAGCTgcgcaaagaaaaggagaccc
TAATGACCGAAATagagcgggaagaagaacatCTGACCAACAATCTCTCT
CGCAAACTGACGAGAGAGCgcgcggagaaagaggcattGGAAGCCCGGCT
GCTGTCGGAACGGAAGCAAGTGCTGGAGTCGAGGGCATtgttgaaggagg
atgcCTGTCTGATAACACAGCTGAAGGCCGCCGTGGAGCCGCTAAAAGAC
GAGGGCGCCCTAAAGCTTAAGGACAGGGAATCCATTTTACAAGTGTCAGA
GCGCCTCATAAATCGCCTCTCGGTAATAGAGAGCGCAACGAgcgacaaag
aggaagacgaggaaagcaaggaagggacagaCAGTATCAGCAGCATCGGA
GCCACTGCAGGCGGTGGTAGCAGTCGTGGCAGCAGCATTGCGGGCGGAAG
CGATGTataaATGCAGCCGCCTCTGTCACCCACTTCCACCGCGAGTCCGG
TCCAAGACTTCGCATATTGGAAGCAGAAGGCAGTCCAGCTCGAGAATGAG
TTGGTTGCATTGAAGGAGCGCTCCATCAAAATGTTTTGCCGGacggaggc
tgaggaggaaggtatcATCAACAAGCTGATAAACCGCTTGGAAGAGCtca
agaaagagaaggagcaccTGGCTGTAGAGGTCgagcgagaagaagagATG
ATATCCAACACGCTTCAAAAGAAGCTCACTAAATTGCAGCAAGAAAAAGT
AGACCAGGAGAACCagctggaggcagagcagGAGGCCATCGTCAACAAAC
TCGGTGCGGAGATTTCGAAGCTgcgcaaagaaaaggagacccTAATGACC
GAAATagagcgggaagaagaacatCTGACCAACAATCTCTCTCGCAAACT
GACGAGAGAGCgcgcggagaaagaggcattGGAAGCCCGGCTGCTGTCGG
AACGGAAGCAAGTGCTGGAGTCGAGGGCATtgttgaaggaggatgcCTGT
CTGATAACACAGCTGAAGGCCGCCGTGGAGCCGCTAAAAGACGAGGGCGC
CCTAAAGCTTAAGGACAGGGAATCCATTTTACAAGTGTCAGAGCGCCTCA
TAAATCGCCTCTCGGTAATAGAGAGCGCAACGAgcgacaaagaggaagac
gaggaaagcaaggaagggacagaCAGTATCAGCAGCATCGGAGCCACTGC
AGGCGGTGGTAGCAGTCGTGGCAGCAGCATTGCGGGCGGAAGCGATGTat
aa

Synonyms

Publications