EWM30368.1, cds284 (CDS) Nannochloropsis gaditana

Overview
NameEWM30368.1
Unique Namecds284
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:710639..710731 +
Alignment locationCM002455.1:711070..711567 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30368.1
ProductTranslation initiation factor eIF3 subunit
Orig transcript idgnl|cribi|Naga_100026g32.10622.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:710639..710731 +
CM002455.1supercontigCM002455.1:711070..711567 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: INTERPRO
TermDefinition
IPR013906eIF3j
Homology
[Close]
BLAST of EWM30368.1 vs. NCBI_GenBank
Match: gi|585113028|gb|EWM30368.1| (Translation initiation factor eIF3 subunit [Nannochloropsis gaditana])

HSP 1 Score: 384.8 bits (987), Expect = 4.903e-135
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 
Query:    1 MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERRRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEKADYAMADELFGPPGQPSSRPLSSLSLSSSASSVGAGKVSERARGPGMSVKAALCAQLPFPLPRRPTHRQSSKLPGTSRPWPRAWVLNSRRRPAART 196
            MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERRRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEKADYAMADELFGPPGQPSSRPLSSLSLSSSASSVGAGKVSERARGPGMSVKAALCAQLPFPLPRRPTHRQSSKLPGTSRPWPRAWVLNSRRRPAART
Sbjct:    1 MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERRRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEKADYAMADELFGPPGQPSSRPLSSLSLSSSASSVGAGKVSERARGPGMSVKAALCAQLPFPLPRRPTHRQSSKLPGTSRPWPRAWVLNSRRRPAART 196
[Close]
BLAST of EWM30368.1 vs. NCBI_GenBank
Match: gi|553181381|ref|XP_005853557.1| (hypothetical protein NGA_0307202 [Nannochloropsis gaditana CCMP526] >gi|422295507|gb|EKU22806.1| hypothetical protein NGA_0307202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 269.626 bits (688), Expect = 1.551e-88
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERRRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEKADYAMADELFGPPGQPSSRPLSSLSLSSSASSVGAGK 137
            MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERRRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEKADYAMADELFGPPGQPSSRPLSSLSLSSSASSVGAGK
Sbjct:    1 MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERRRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEKADYAMADELFGPPGQPSSRPLSSLSLSSSASSVGAGK 137
The following BLAST results are available for this feature:
BLAST of EWM30368.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585113028|gb|EWM30368.1|4.903e-135100.00Translation initiation factor eIF3 subunit [Nannoc... [more]
gi|553181381|ref|XP_005853557.1|1.551e-88100.00hypothetical protein NGA_0307202 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna284rna284Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications