rna284, rna284 (mRNA) Nannochloropsis gaditana

Overview
Namerna284
Unique Namerna284
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationCM002455.1:710424..712221 +

Link to JBrowse

Properties
Property NameValue
ProductTranslation initiation factor eIF3 subunit
Orig transcript idgnl|cribi|Naga_100026g32.10622.mrna
Orig protein idgnl|cribi|Naga_100026g32.10622
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:710424..712221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g32gene273Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna284rna284-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30368.1cds284Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna284 ID=rna284|Name=rna284|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGTTTAAAGTTGAAAATGCTAACAGTAAAGTGATATCCTTTTTTAATGG
AGTGTTGAGCGAAGAAATCCGACAAAACCAAAGAGATTGTTCAAGCCTGA
GTGGTCGTATGCATACGATTCATGAAGTGAATCAGTATCGCTGGATTTTG
CTTAGGAGTAAAGCACAACTAAGAAAATATGCTGCCTGGCAGGCATCCTG
A
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protein sequence of rna284

>rna284-protein ID=rna284-protein|Name=rna284|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAER
RRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEK
ADYAMADELFGPPGQPSSRPLSSLSLSSSASSVGAGKVSERARGPGMSVK
AALCAQLPFPLPRRPTHRQSSKLPGTSRPWPRAWVLNSRRRPAART
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mRNA from alignment at CM002455.1:710424..712221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna284 ID=rna284|Name=rna284|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp|location=Sequence derived from alignment at CM002455.1:710424..712221+ (Nannochloropsis gaditana)
TGTCATTCAGGGAGAAATGATGACATGTGTGGGACGGTCTTTACATGGGA
AGAGGGCATGAAAATAACATGGCCTGGCGGGATGGAGCGTCACACCTGTG
TATGCGTTCGATCCACAAGCAACTCACCATTTGCGTCGGGGCCTGTCTCC
AATCTGCTTTAGGCTACTTTTCTCTAATTTAGCCTATTCTATACAGACAG
AGACACACAGGGATCATGGGAGACTCATGGGAAGATGACGACTTCACCCC
AGTGGTGCCTCAAGCAGTGGTGCTGCCAACCAAGACATCCTGGGACGATG
AGGATCTGGTAGGTCGTCCGCTACCCTTGAAGTGCTGCCCCTTAGTGTAC
TCATGCGCCCTTTGACGATTTTCGTCGAAAGTTTGGCCTGTGAAATGATT
TGGAATGCTATAAGCTTATGCAAGGAAGAAAGTTGACTTGTACATATCTT
GCGTATGCTTAAGCTAGGCTTTGATCCAGTTGTTACGAAGAAGGGCGCAA
AGGCAAAGTTTTTTTGCGCGTAAATGCGCACTATATTGGCCGAAGTTGCA
TACATGTGTCGTTAATATACGAAGAGAGTGGGAAGCTCGCTCACCGGTCG
CTCAGAACCATCATTTTCGGTTCCCTTTTCCGACATGGCATCACAGCCAG
AGGACCCTAACGCGGGCAAGACACCGGAGGAAATCGCAGCCGAGGCCGAG
CGGCGGAGAAAGGCGGAAGAGGCTCGACAGGCGAGGGCACGAAAAAATGC
GGAGCGAGCAGAATTGCGGCGgcaggcggaagaggaagcggagcgGATGG
CCAAAGAGACACCGGAGGAGCGCGCCCTGCGGGAGCGCCAGgctgtggag
aaggcggactACGCCATGGCCGACGAGCTCTTCGGCCCCCCCGGCCAGCC
CAGCAGTcggcccttgtcctccctctctctctcttcctctgcctcctccg
tggGCGCAGGCAAGGTGAGCGAGAGGGCCCGAGGCCCCGGCATGAGCGTG
AAGGCCGCGCTGTGTGCTCaactccccttccccctccccaggcgCCCAAC
GCACCGACAGTCCTCAAAGCTCCCGGGGACTTCACGGCCCTGGCCAAGAG
CCTGGGTCCTCAATTCAAGAAGGCGGCCAGCAGCAAGGACGTGACCGGCT
TTGTATTGGAGCTGTTGGCccgcggggggaaggatcctgtgggggtggag
gacttgAATGAGCTGATCAAAGGTCTGCAGGCGCTGGCCGTGGAGAAGCA
ACGGCTTGCGGACGCGAACCGCAATAAGATCGGGGCGAAGCagaaggcgc
tggcggcgaagaagaaggagcacaAGGCAAAGAGCGCGCAGCACAAGGAG
GTGTTCGGCGCCGacttcgacgaggacgaccCCGACATGGACCAGTACTA
CgccatggaggacgtgcgTGGGGCCAGGAGGCCTGGTTATCGGGCGGGGG
TCTGGGGTTTGGTTCGTGCGCGCTTCTTTTTAGTCCGTTCTCTCACACGC
GGCGCGTTTCCCCGACCTCGGGACGCGGCTCCGAGCACCTTGCCTTCTCA
CGGCGGGCTCTGGCCTaccgcctttcctccctcccttcccctcactcCAC
AGGAGTTCATGTAAGGGCACTGTAACCCCGGTTCCGCTCGACGAAGGCTG
GGAGCGCCCTTTCGGTGGGATAAAATGGATGCTTTACCGCTGCGCTTCGg
ctgaggaagagagaaatgCGAGCGGGGATCGGGGTCCTACAAACGAAGAA
AGGAGAACAAGTTCCTGGCCAAAGAAAAACAAGACAAATACCCTCTCC
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Coding sequence (CDS) from alignment at CM002455.1:710424..712221+

>rna284 ID=rna284|Name=rna284|organism=Nannochloropsis gaditana|type=CDS|length=1182bp|location=Sequence derived from alignment at CM002455.1:710424..712221+ (Nannochloropsis gaditana)
ATGGGAGACTCATGGGAAGATGACGACTTCACCCCAGTGGTGCCTCAAGC
AGTGGTGCTGCCAACCAAGACATCCTGGGACGATGAGGATCTGCCAGAGG
ACCCTAACGCGGGCAAGACACCGGAGGAAATCGCAGCCGAGGCCGAGCGG
CGGAGAAAGGCGGAAGAGGCTCGACAGGCGAGGGCACGAAAAAATGCGGA
GCGAGCAGAATTGCGGCGgcaggcggaagaggaagcggagcgGATGGCCA
AAGAGACACCGGAGGAGCGCGCCCTGCGGGAGCGCCAGgctgtggagaag
gcggactACGCCATGGCCGACGAGCTCTTCGGCCCCCCCGGCCAGCCCAG
CAGTcggcccttgtcctccctctctctctcttcctctgcctcctccgtgg
GCGCAGGCAAGGTGAGCGAGAGGGCCCGAGGCCCCGGCATGAGCGTGAAG
GCCGCGCTGTGTGCTCaactccccttccccctccccaggcgCCCAACGCA
CCGACAGTCCTCAAAGCTCCCGGGGACTTCACGGCCCTGGCCAAGAGCCT
GGGTCCTCAATTCAAGAAGGCGGCCAGCAGCAAGGACGTGAATGGGAGAC
TCATGGGAAGATGACGACTTCACCCCAGTGGTGCCTCAAGCAGTGGTGCT
GCCAACCAAGACATCCTGGGACGATGAGGATCTGCCAGAGGACCCTAACG
CGGGCAAGACACCGGAGGAAATCGCAGCCGAGGCCGAGCGGCGGAGAAAG
GCGGAAGAGGCTCGACAGGCGAGGGCACGAAAAAATGCGGAGCGAGCAGA
ATTGCGGCGgcaggcggaagaggaagcggagcgGATGGCCAAAGAGACAC
CGGAGGAGCGCGCCCTGCGGGAGCGCCAGgctgtggagaaggcggactAC
GCCATGGCCGACGAGCTCTTCGGCCCCCCCGGCCAGCCCAGCAGTcggcc
cttgtcctccctctctctctcttcctctgcctcctccgtggGCGCAGGCA
AGGTGAGCGAGAGGGCCCGAGGCCCCGGCATGAGCGTGAAGGCCGCGCTG
TGTGCTCaactccccttccccctccccaggcgCCCAACGCACCGACAGTC
CTCAAAGCTCCCGGGGACTTCACGGCCCTGGCCAAGAGCCTGGGTCCTCA
ATTCAAGAAGGCGGCCAGCAGCAAGGACGTGA
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Synonyms
Publications