rna282, rna282 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna282
Unique Name	rna282
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1624
Alignment location	CM002455.1:709033..709645 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100026g34.10616.mrna
Orig protein id	gnl\|cribi\|Naga_100026g34.10616
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:709033..709645 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g34	gene271	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna282	rna282-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30362.1	cds282	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:709033..709645+
coding sequence from alignment at CM002455.1:709033..709645+

mRNA sequence

>rna282 ID=rna282|Name=rna282|organism=Nannochloropsis gaditana|type=mRNA|length=1624bp
AAGGATAGCAACCTCTTCGGAAGTTCTGACGCCGGCGTCGGGGATGCTCA
CGAGGCTCGAGATCTACGGCACCTCGATTAACCTCCCCAAGGTCCTCCTC
CTTGTCCTCGTCAACTTAATATGGTCATCTGGAACTTTCGCCGAAAGCTT
CAGCCCTATCAGTCCTCTAACACGCTTTGATGCCAAGGGTCAATTGCCTC
AAAGTGATGCTGCTGCTCGAGCTGTGTCAAGAGGGGCTCCTCTCATCGCG
CTCTCTCTCGGAGAGGCGATATTGTTGGTTGCGCCGAGGTGAGAATGGCA
TACGGGCGGAGTGCCCACAGAGGCCAGTAACATTATCTGAGTCCAATTGA
GCCTGTCAAATTGAACGAGAGGATTACGAAATAATTTCATTGGCATAGAG
GTGTTGTGGAGAGGGTTAATTGTCAAGAAAGAGTGCCTGACGTGAGGGAC
ATCAGTGGAAGATGACGAACCTCATATGGAGAGGACCACAGGGGTAATCC
CGACACTCTGTCTTATCCTTTTTTCATTTTTAATTACATTCCCTCGCGGT
CACCAAGTGAAAGACAGCCTCTATCCCTTGTTGAGGGAGGCGGTCTTCCG
AAGCTCTGGCGGTTGACTAAAGGCATATGCCTGAGTCACGTAGGCCTTAG
ACAAGACAGTCGCACACTTCTCCTCGCCGCCCAACAAGCCGCAGCCGATT
ATGAAAACCGTTTTGGAGAGGACATTCCTGTGGCTGAGGTTGTGGAAATA
ATTGCCGCCAAGCAGCAGGAAGCCACGATGCAAGGACGGCGCCGCCCGTA
CGGATCCAGTATCCTTATTGCAGGGTTGCTAGAGGAGACCCCAGACCCCG
CCACCAAGAGCAACAAGCAGCTTTTCCCGCGCATTTATAAAACAGATCCC
TCGGGCACTTTCACTCTTTGGAAGGCCTGCGCCGTTGGGCGGGGCGCGGA
GACAGCCATGACCGTCCTGGAGGAAAAGTACGAGCCCGACATGGATCTTC
GAGACGCTTTGAAGCTTTCCCTCGACTGCTGCCGGGCTCTGTTGGAAAAT
GGCGGTGTTATAGGAGAGGAGGTAAACAAAGGGAAGGAGGATAAAAGCGA
GGTGGAAAGAAGTCAGCAGGGCGGGAGCGAGGAGACGGGGGCGGCGCGCG
AAGAGAAGGGAGATCGAGCGCGCGTGGGAGTGGACGTTGCCCTGGTTTCC
AATGAGGGTGTGGCACTATGGGAGTCCATATCACCTATGGAAGAGATACT
CGAGCTTGTCAATAGAAGTGACGCCAACGCAGCAGTCGCTTCTTCAAAGG
AGAAGTAGGTGGAAGTCCGATGCGAATGTCAGTTGGCTGATCAGAACAGT
CGCCTCCTCTTCAGGTCTCAAGTCACACTTTAAAATGTGATTGGAGTGTA
ATGCGGAGGAAAGCAAGTGGAGACAGGGCAAGAATTGTTCCGAAAGTCAT
CCTCTGTTTCGCCTCGTCTGGGAACATATCTTTGCAGAAACTCGGAAATG
AGGATCACTATTCAGCCACTAACCATTGTTAGGTTCTACAGAATATTTAA
GTCACAGGCATAATATTTATGGCACGGTTTTGTAGTCACTCGCAAAGTAC
AATTGCTGCCGTCGAGGCAAACTC

protein sequence of rna282

>rna282-protein ID=rna282-protein|Name=rna282|organism=Nannochloropsis gaditana|type=polypeptide|length=84bp
MPETRQDLGDLLDDVERALAKTYETMNSLISASKPTKGAVEDLAAYSFKF
NLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS

mRNA from alignment at CM002455.1:709033..709645+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna282 ID=rna282|Name=rna282|organism=Nannochloropsis gaditana|type=mRNA|length=613bp|location=Sequence derived from alignment at CM002455.1:709033..709645+ (Nannochloropsis gaditana)
ATGCCTGAAACTCGACAAGATTTAGGGGATCTGCTTGATGACGTAGAGCG
GGCTCTTGCGGTACGTATTTCGCCCTACACTGGCCAGATTTAAAGACGCA
CatgtcattttcctcttgcttaGTGTGAAACTTTCGAAAGATTGCGGAAA
GAAAATGTTTTTTTTGGGATTGCTAGCGCATAGCAATGTACTGTAGGTAT
TTGTCTCTGGAGCGTAGCCCGCCCTATCCCTCTGATTTTCATTGCGTTCC
TCATTTCTCAGCCTAAATGTATGACGCAAAGTTCTGCATGACAAACGTCT
TGTTATGCTTTAGATACTCTTGAAACAACCTTGTCTTGATCGGACTTTAA
CCCCTACCTTGGTGTGGAGGTCATATAGTTCCTGACTGTTGTATACGTCT
TGTCATGCACTTTTACAGAAAACGTACGAGACTATGAATTCATTGATTTC
AGCGAGCAAGCCTACCAAGGGTGCGGTAGAGGATTTGGCCGCATATTCCT
TTAAATTCAATCTTTCTCTGCATAACCTGCAGCTTGCGACATCTGACTTT
GCATCCGCAGCAAATGTCAAGACTATTGAGCCTGACACTATGCAGAAAAG
CGGTGGTTCATAA

Coding sequence (CDS) from alignment at CM002455.1:709033..709645+

>rna282 ID=rna282|Name=rna282|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at CM002455.1:709033..709645+ (Nannochloropsis gaditana)
ATGCCTGAAACTCGACAAGATTTAGGGGATCTGCTTGATGACGTAGAGCG
GGCTCTTGCGAAAACGTACGAGACTATGAATTCATTGATTTCAGCGAGCA
AGCCTACCAAGGGTGCGGTAGAGGATTTGGCCGCATATTCCTTTAAATTC
AATCTTTCTCTGCATAACCTGCAGCTTGCGACATCTGACTTTGCATCCGC
AGCAAATGTCAAGACTATTGAGCCTGACACTATGCAGAAAAGCGGTGGTT
CATAAATGCCTGAAACTCGACAAGATTTAGGGGATCTGCTTGATGACGTA
GAGCGGGCTCTTGCGAAAACGTACGAGACTATGAATTCATTGATTTCAGC
GAGCAAGCCTACCAAGGGTGCGGTAGAGGATTTGGCCGCATATTCCTTTA
AATTCAATCTTTCTCTGCATAACCTGCAGCTTGCGACATCTGACTTTGCA
TCCGCAGCAAATGTCAAGACTATTGAGCCTGACACTATGCAGAAAAGCGG
TGGTTCATAA

Synonyms

Publications