EWM30362.1, cds282 (CDS) Nannochloropsis gaditana

Overview
NameEWM30362.1
Unique Namecds282
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:709033..709092 +
Alignment locationCM002455.1:709451..709645 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30362.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100026g34.10616.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:709033..709092 +
CM002455.1supercontigCM002455.1:709451..709645 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM30362.1 vs. NCBI_GenBank
Match: gi|585113022|gb|EWM30362.1| (hypothetical protein Naga_100026g34 [Nannochloropsis gaditana])

HSP 1 Score: 172.17 bits (435), Expect = 1.810e-54
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 MPETRQDLGDLLDDVERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS 84
            MPETRQDLGDLLDDVERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS
Sbjct:    1 MPETRQDLGDLLDDVERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS 84
[Close]
BLAST of EWM30362.1 vs. NCBI_GenBank
Match: gi|553181378|ref|XP_005853556.1| (hypothetical protein NGA_0306302 [Nannochloropsis gaditana CCMP526] >gi|422295506|gb|EKU22805.1| hypothetical protein NGA_0306302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.629 bits (431), Expect = 7.547e-54
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 MPETRQDLGDLLDDVERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS 84
            MPETRQDLGDLLDD+ERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS
Sbjct:    1 MPETRQDLGDLLDDLERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS 84
The following BLAST results are available for this feature:
BLAST of EWM30362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585113022|gb|EWM30362.1|1.810e-54100.00hypothetical protein Naga_100026g34 [Nannochlorops... [more]
gi|553181378|ref|XP_005853556.1|7.547e-5498.81hypothetical protein NGA_0306302 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna282rna282Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications