EWM30427.1, cds253 (CDS) Nannochloropsis gaditana

Overview
NameEWM30427.1
Unique Namecds253
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:636207..636425 +
Alignment locationCM002455.1:636653..636793 +
Alignment locationCM002455.1:637033..638031 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30427.1
Productactin-related protein 6
Orig transcript idgnl|cribi|Naga_100210g13.8075.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:636207..636425 +
CM002455.1supercontigCM002455.1:636653..636793 +
CM002455.1supercontigCM002455.1:637033..638031 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006338chromatin remodeling
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR030054Arp6
IPR004000Actin
Homology
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|585113088|gb|EWM30427.1| (actin-related protein 6 [Nannochloropsis gaditana])

HSP 1 Score: 940.643 bits (2430), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0
Query:    1 MAPPAASGASGTGFSGHQNTNNTNIVTRPQNEGDFVTLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQPQIFVSKSQYDEYGAEFIQERMFDGLW 452
            MAPPAASGASGTGFSGHQNTNNTNIVTRPQNEGDFVTLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQPQIFVSKSQYDEYGAEFIQERMFDGLW
Sbjct:    1 MAPPAASGASGTGFSGHQNTNNTNIVTRPQNEGDFVTLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQPQIFVSKSQYDEYGAEFIQERMFDGLW 452          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|671690662|emb|CDS05401.1| (hypothetical protein LRAMOSA07929 [Lichtheimia ramosa])

HSP 1 Score: 319.316 bits (817), Expect = 4.372e-102
Identity = 159/415 (38.31%), Postives = 243/415 (58.55%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQPQ-----IFVSKSQYDEYGAEFIQER 446
             +VLDNG   +K+  A +  PR  +PN + + +   +  IG+ ++   + ++L Y  PF+RGYLT+W  E  IW R FG+    +DP  + +++TE  F  S +     QV+FE++ FA+C +  A     Y             G +   G+  D  LV+DSGFSFTH+VP ++GK  R  +RR+NVGGKLLTN LKETVS+R ++MM+E  ++N  KE  C+VS +   ++          RQ      + + +VLPD+  TMRG+V+    QG Q + + +Q+L+M  ERF++PE+L  PSD+G++Q G+PEA+ ++V ACD  L G LY NI+L GGN   PG+ +R+  +LR   P  Y +++  PP+P+EYAW G  +      +      FVS+ +Y EYG+E  + R
Sbjct:    4 VVVLDNGGSTIKVNTAHNTQPRL-VPNAIIRGRSDRRNFIGDQIEQCTDFSSLYYRLPFERGYLTNWGVERPIWNRLFGS-VLNIDPKDSGILITEPCFNLSNIQEAYDQVIFEDYEFASCYRTTAPQLCIY------NDISSIFGDR--PGSIPDCALVVDSGFSFTHIVPFWKGKPVRRAIRRINVGGKLLTNQLKETVSFRYYDMMEETHIINQVKEECCYVSLDVSKDLDT-------CRQPYHANTVVQEYVLPDYINTMRGHVR--PKQGRQSSTSSEQILTMNNERFMIPEILMHPSDIGIQQAGIPEAITQSVSACDAELHGLLYANIILVGGNANIPGYRERIIQDLRTMAPSIYEIRIAKPPNPVEYAWHGGQNYVALSSKSDLQRTFVSRKEYLEYGSEICRRR 399          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|1102207847|ref|XP_019023636.1| (actin-like protein ARP6 [Saitoella complicata NRRL Y-17804] >gi|813208357|dbj|GAO50442.1| hypothetical protein G7K_4567-t1 [Saitoella complicata NRRL Y-17804] >gi|1063229318|gb|ODQ52523.1| actin-like protein ARP6 [Saitoella complicata NRRL Y-17804])

HSP 1 Score: 313.923 bits (803), Expect = 1.428e-99
Identity = 156/413 (37.77%), Postives = 242/413 (58.60%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQPQI---FVSKSQYDEYGAEFIQER 446
            TLVLDNGA  +K GFAG+      IPNC+A+ +   +  + ++++S  +T+ L + RPF+RGYLT WE E  IW R F A    VDP+QT L+ TE       + T   Q++FEE+ FA+  +   AS   +  +  +++           G   + VL++DSGFSFTHVVP+ +G+ +  GVRR+NVGG+ +TNLLKET+SYR +NMMDE  L+N  KE+ C+VSQ+F  ++               Q  +  ++VLPDF T   GY+ D   +   + ++ +Q +++  ERF  PE+LF+P D+GL+Q G+ E +++++E     L+  L  N+VL GG+    GF +R+ TELR   P  + V++  P DP  Y W G A++A     +    V++++Y EYG   ++ +
Sbjct:    5 TLVLDNGAYSIKAGFAGESCRS--IPNCLARPRNDKRVYVADELESCRDTSALAFRRPFERGYLTSWEVEKPIWDRVFSAECLSVDPSQTSLIFTEPLQNLPSIQTACDQIIFEEYEFASYYRTTGASLVPWNSTQDDRR-----------GAPAEVVLIVDSGFSFTHVVPVIKGEVEWKGVRRINVGGRQITNLLKETISYRHYNMMDETHLINQVKESCCYVSQDFATDLRMCHKNN--------QNDITVSYVLPDFNTNRPGYLVD---RSKSRPDSSEQAVTLGNERFTAPELLFKPGDIGLKQAGIAETIMQSIEDMPQELQALLLANVVLVGGSCKISGFKERIETELRAVAPTEFIVRITKPDDPSTYIWEGGANLADSDEALQAKSVTRAEYLEYGTSIMERK 393          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|1178049567|gb|ORE05205.1| (actin-like protein ARP6 [Rhizopus microsporus var. microsporus])

HSP 1 Score: 311.612 bits (797), Expect = 5.151e-99
Identity = 160/417 (38.37%), Postives = 238/417 (57.07%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGV--DAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQP-----QIFVSKSQYDEYGAEFIQER 446
            TL++DNGA  +K G +   A    IPN + + K   Q  +G+++D   N ++L Y  PF++GYL +W+ E  +W R F  + AK+ P +T L++TE  F    +     QV+FEEF FA+C +  A     +           +LG   G+  G   D  L++DSG+SFTH++P  +GK    G+RR+NVGGKLLTN LKE VS+R ++MM+E  ++ND KE   FVS +   ++         SRQ      + R +VLPDF    +GYV+ V+       ++ +QVL M  ERF++PE+L  PSD+GL Q G+PEA+V++V ACD  + G LY NI+L GGN   PG+ +R+  +LR  VP  Y +++  PP P  +AW G              +IFV + +Y EYG+E  + +
Sbjct:    5 TLIIDNGAYTIKAGISYPEARPRKIPNAIVRGKTNKQNYVGDELDECTNYSSLYYRLPFEKGYLVNWDVEKTVWNRLFN-HVAKIKPKETRLLVTEPCFNLPVIQENYDQVIFEEFEFASCYRTMAPQLCLF----------NELGGLFGDKIGSIPDCTLIVDSGYSFTHIIPFLKGKPVAKGIRRINVGGKLLTNHLKEVVSFRHYDMMEETYIINDVKEKCSFVSHDVYKDLKT-------SRQHHLNNPIVREYVLPDFVHAQQGYVRPVKAN----RDSHEQVLLMNNERFMIPEILMHPSDIGLDQAGIPEAIVQSVNACDSVIHGLLYANIILVGGNANIPGYMERIQQDLRQLVPVEYDIRIVTPPSPDTFAWHGGNTFVSLSSKSELQKIFVQRKEYLEYGSEICRRK 399          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|1178060033|gb|ORE14631.1| (actin-like protein ARP6 [Rhizopus microsporus])

HSP 1 Score: 310.457 bits (794), Expect = 1.363e-98
Identity = 159/417 (38.13%), Postives = 240/417 (57.55%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGV--DAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQP-----QIFVSKSQYDEYGAEFIQER 446
            TL++DNGA  +K G +   A    IPN + + K   +  +G+++D   + ++L Y  PF++GYL +W+ E  IW R F  + AK+ P +T L++TE  F    +     QV+FEEF FA+C +  A+    +           +LG   G+  G   D  L++DSG+SFTH++P  +GK    G+RR+NVGGKLLTN LKE VS+R ++MM+E  ++ND KE   FVS +   ++         SRQ      + R +VLPDF  T +G+V+ V+       ++ +QVL M  ERF++PE+L  PSD+GL Q G+PEA+V++V ACD  + G LY NI+L GGN   PG+ +R+  +LR  VP  Y +++  PP P  +AW G              +IFV + +Y EYG+E  + +
Sbjct:    5 TLIIDNGAYTIKAGISYPEARPRKIPNAIVRGKNNKRNYVGDELDECTDFSSLYYRLPFEKGYLVNWDVEKTIWNRLFN-HVAKIKPKETRLLVTEPCFNLPVIQENYDQVIFEEFEFASCYRTMASQLCLF----------NELGGLFGDKIGSIPDCTLIVDSGYSFTHIIPFLKGKPVAKGIRRINVGGKLLTNHLKEVVSFRHYDMMEETYIINDVKEKCSFVSHDVYKDLKT-------SRQHHLNNPIIREYVLPDFVHTQQGHVRPVKAN----RDSHEQVLLMNNERFMIPEILMHPSDIGLDQAGIPEAIVQSVNACDSVIHGLLYANIILVGGNANIPGYMERIQQDLRQLVPVEYDIRIVTPPSPDTFAWHGGNTFVSLSSTSELQKIFVQRKEYLEYGSEICRRK 399          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|1183486111|gb|ORZ09845.1| (actin-related protein 6-like protein [Absidia repens])

HSP 1 Score: 309.686 bits (792), Expect = 2.156e-98
Identity = 158/415 (38.07%), Postives = 238/415 (57.35%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHM-----AQYQPQIFVSKSQYDEYGAEFIQER 446
            TL+LDNGA  +K+G A   AP+  +PN + + +   +  I + +D   + ++L Y   F++GYLT+W  E  IW R F  + AK+D   T LV+TE  F    +     Q++FEE+GF +C +        Y             G  +   +  D  +++DSG+SFTH++P ++ K  +  +RR+NVGGKLLTN LKETVS+R ++MM+E  ++ND KEA C+VSQN   ++   R          T  ++ + FVLPDF TT RG+V+        ++  ++Q+L M  ERF++PE L  PSD+G+ Q G+PE +VEA+EAC+  L G LY NIVL GGN  F G+ QR+ T+LR  +P  Y +++  P +P   AW G   +        Q   FVSK  Y EYG++  +++
Sbjct:    4 TLILDNGASTIKVGLATHRAPKI-VPNVILRGRTDRRQYIADQVDECTDFSSLLYRLAFEKGYLTNWGLERTIWDRVF-KHVAKIDAKDTQLVMTEPMFNLEAIQEAYDQIIFEEYGFQSCYRTTGPQLCVY------NDWNSLFGDPKD--SVPDCAVIVDSGYSFTHIIPFFKRKPIKKAIRRINVGGKLLTNRLKETVSFRYYDMMEESYIINDVKEACCYVSQNVMKDLKICRQD--------TNNSIVQEFVLPDFSTTTRGHVRQ---PNSSKSNDDEQILVMNNERFMIPESLMHPSDIGMNQAGIPETIVEAIEACEPELHGLLYANIVLVGGNAKFDGYQQRIETDLRQMIPSDYDLRITTPLEPTLSAWMGGQRLISNSSKSEQQHFFVSKQDYMEYGSDICRKK 397          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|729711682|emb|CEI91991.1| (hypothetical protein RMCBS344292_06266 [Rhizopus microsporus])

HSP 1 Score: 309.686 bits (792), Expect = 2.936e-98
Identity = 159/417 (38.13%), Postives = 239/417 (57.31%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGV--DAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQP-----QIFVSKSQYDEYGAEFIQER 446
            TL++DNGA  +K G +   A    IPN + + K   +  +G+++D   N ++L Y  PF++GYL +W+ E  +W R F  + AK+ P +T L++TE  F    +     QV+FEEF FA+C +  A     +           +LG   G+  G   D  L++DSG+SFTH++P  +GK    G+RR+NVGGKLLTN LKE VS+R ++MM+E  ++ND KE   FVS +   ++         SRQ      + R +VLPDF  T +G+V+ V+       ++ +QVL M  ERF++PE+L  PSD+GL Q G+PEA+V++V ACD  + G LY NI+L GGN   PG+ +R+  +LR  VP  Y +++  PP P  +AW G              +IFV + +Y EYG+E  + +
Sbjct:    5 TLIIDNGAYTIKAGISYPEARPRKIPNAIVRGKNNKRNYVGDELDECTNFSSLYYRLPFEKGYLVNWDVEKIVWNRLFN-HVAKIKPKETRLLVTEPCFNLPVIQENYDQVIFEEFEFASCYRTMAPQLCLF----------NELGGLFGDKIGSIPDCTLIVDSGYSFTHIIPFLKGKPVAKGIRRINVGGKLLTNHLKEVVSFRHYDMMEETYIINDVKEKCSFVSHDVYKDLKT-------SRQHHLNNPIIREYVLPDFVHTQQGHVRPVKAN----RDSHEQVLLMNNERFMIPEILMHPSDIGLDQAGIPEAIVQSVNACDSVIHGLLYANIILVGGNANIPGYMERIQQDLRQLVPVEYDIRIVTPPSPDTFAWHGGNTFVSLSSKSELQKIFVQRKEYLEYGSEICRRK 399          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|511002111|gb|EPB83557.1| (hypothetical protein HMPREF1544_09718 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 309.686 bits (792), Expect = 3.249e-98
Identity = 157/417 (37.65%), Postives = 241/417 (57.79%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGE--GTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQPQ-----IFVSKSQYDEYGAEFIQER 446
            T++LDNGA  MK+G A D A    +PN + + K   +  +G+ MD+  + ++L Y  PF++G L +W  E  IW   F  N AK++P  + L++TE  F    +     Q+VFEEF F AC +       G    L+    +    +Q G    +  D  L++DSG+SFTH+VP  +GKA   GVRR+NVGGKLLTN LKE VS+R ++MM+E  ++ND KE  CFVS++   ++          ++   +  + + +VLPDF     G+++    +G   T A+QQ+L+M  ERF++PE+L  PSD+GL Q G+PEA+V++V ACD  + G LY NIVL GGN   PG+ +R+  +LR  VP  Y +++  P +P+ +AW G   +     +      FV + +Y EYG++  + +
Sbjct:    5 TVILDNGAHSMKVGIASDGASPKLVPNAIVRGKADKRHYVGDQMDNCTDFSSLYYRLPFEKGLLVNWGIERTIWDSLF-KNVAKIEPKDSRLLITEPCFNLPAIQDNYDQIVFEEFEFGACFRT-----IGPELCLLNDLGELFGDNQSGSVAASIPDCALIVDSGYSFTHIVPFLKGKAIPEGVRRINVGGKLLTNQLKEVVSFRSYDMMEETYIINDVKEKCCFVSKDVYLDL-------DICKKPLAKNTIIQEYVLPDFINNKTGHIR---TKGADATVADQQILAMNNERFMIPEILMHPSDIGLEQAGIPEAIVQSVNACDPAIHGLLYANIVLVGGNANIPGYVERIQQDLRQLVPIDYEIRIAKPENPVTFAWEGGNRLISLSTEKELQKTFVQRKEYLEYGSDVCRRK 405          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|661185611|emb|CDH52255.1| (arp6 actin-related protein 6 homolog [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 308.531 bits (789), Expect = 7.417e-98
Identity = 157/418 (37.56%), Postives = 241/418 (57.66%), Query Frame = 0
Query:   37 TLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYV---QDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQP-----QIFVSKSQYDEYGAEFIQER 446
             +VLDNG   +K+  A D  PR  +PN + + +   +  IG+ ++   + ++L Y  PF+RGYLT+W  E  IW R FG+    +DP  + +++TE  F  S +     QV+FE++ FA+C +  A     Y             G +   G+  D  LV+DSGFSFTH+VP ++GK  R  +RR+NVGGKLLTN LKETVS+R ++MM+E  ++N  KE  C+VS +   ++          RQ      + + +VLPD+  TMRG+V   Q  Q    ++  + +Q+L+M  ERF++PE+L  PSD+G++Q G+PEA+ ++V ACD  L G LY NI+L GGN   PG+ +R+  +LR   P  Y +++  P +P+EYAW G  +           + FVS+ +Y EYG+E  + +
Sbjct:    4 VVVLDNGGSTIKINTAHDTEPRL-VPNAIIRGRSDRRNFIGDQIEQCTDFSSLYYRLPFERGYLTNWGVERPIWNRLFGS-VLNIDPKDSGILITEPCFNLSNIQEVYDQVIFEDYEFASCYRTTAPQLCIY------NDISSIFGDR--PGSIPDCALVVDSGFSFTHIVPFWKGKPVRRAIRRINVGGKLLTNQLKETVSFRYYDMMEETHIINQVKEECCYVSLDVYKDLDT-------CRQPYHANDVVQEYVLPDYINTMRGHVRPKQARQSSTLKKGASSEQILTMNNERFMIPELLMHPSDIGIQQAGIPEAITQSVNACDAELHGLLYANIILVGGNTNIPGYRERIMQDLRTMAPSTYELRIAQPENPVEYAWHGGQNFVALSSRSDLQRTFVSRKEYFEYGSEICRRK 404          
BLAST of EWM30427.1 vs. NCBI_GenBank
Match: gi|926628558|ref|XP_013779892.1| (PREDICTED: actin-related protein 6-like [Limulus polyphemus])

HSP 1 Score: 308.531 bits (789), Expect = 7.566e-98
Identity = 157/419 (37.47%), Postives = 248/419 (59.19%), Query Frame = 0
Query:   34 DFVTLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQW-LIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQTEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQ--PQIFVSKSQYDEYGAEFIQERMFD 449
            D  T VLDNGA   K G++    PR  IPNC+ K K + +   IG+ +D   + + L Y  PF +GYL +WE E Q+W   FG +   +D  +T L++TE  F  + +    T+++FEE+ F +  ++ A + S +RY    K+   +L             LV++SG+SFTH+VP  +GK  +  +RR+NVGGK LTN LK+ +SYRQ ++MDE  +MN  KE +C+VS  F  +M+  R  G           + R++VLPD+    RGYV+ ++ +   + +  +Q++ M  ERF+VPE+LF PSD+G+++ G+PEA+V +++A    ++  LY NI+LTGGN  FP F  R+++++R   PE Y V V  P +P+ +AW G + +++ +  P++ VSK  Y+E G     E+ FD
Sbjct:    4 DVKTFVLDNGAYTEKCGYSTQAEPRI-IPNCITKAKSERRRPFIGDQIDDCKDISGLFYILPFQKGYLVNWEVEKQVWDYTFGQDVFNIDFGETCLIVTEPYFNFTSIQENMTEILFEEYQFHSLLRINAGTLSAHRY---HKENPNEL-----------CCLVVESGYSFTHIVPYIKGKKLKNAIRRINVGGKALTNHLKDIISYRQLHVMDETYVMNQVKEDVCYVSTQFDHDMSVARKKG-------KDNTIIRDYVLPDYTVIKRGYVRPLE-ETTGKPKDNEQIIRMNNERFMVPELLFHPSDIGVQEMGIPEAIVHSIQATPEEVQPHLYKNILLTGGNACFPFFKTRVYSDVRAFAPELYDVSVTLPENPVTFAWHGGSLLSENEEAPKMIVSKKMYEENGMNLCLEK-FD 398          
The following BLAST results are available for this feature:
BLAST of EWM30427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113088|gb|EWM30427.1|0.000e+0100.00actin-related protein 6 [Nannochloropsis gaditana][more]
gi|671690662|emb|CDS05401.1|4.372e-10238.31hypothetical protein LRAMOSA07929 [Lichtheimia ram... [more]
gi|1102207847|ref|XP_019023636.1|1.428e-9937.77actin-like protein ARP6 [Saitoella complicata NRRL... [more]
gi|1178049567|gb|ORE05205.1|5.151e-9938.37actin-like protein ARP6 [Rhizopus microsporus var.... [more]
gi|1178060033|gb|ORE14631.1|1.363e-9838.13actin-like protein ARP6 [Rhizopus microsporus][more]
gi|1183486111|gb|ORZ09845.1|2.156e-9838.07actin-related protein 6-like protein [Absidia repe... [more]
gi|729711682|emb|CEI91991.1|2.936e-9838.13hypothetical protein RMCBS344292_06266 [Rhizopus m... [more]
gi|511002111|gb|EPB83557.1|3.249e-9837.65hypothetical protein HMPREF1544_09718 [Mucor circi... [more]
gi|661185611|emb|CDH52255.1|7.417e-9837.56arp6 actin-related protein 6 homolog [Lichtheimia ... [more]
gi|926628558|ref|XP_013779892.1|7.566e-9837.47PREDICTED: actin-related protein 6-like [Limulus p... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna253rna253Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications