|
|
Properties
| Property Name | Value |
|---|
| Product | putative alpha-ketoglutarate-dependent dioxygenase abh7 |
| Orig transcript id | gnl|cribi|Naga_100210g5.8076.mrna |
| Orig protein id | gnl|cribi|Naga_100210g5.8076 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:623949..625094 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna245 ID=rna245|Name=rna245|organism=Nannochloropsis gaditana|type=mRNA|length=1462bp
AAGTCTCTTCGCTCATCCTACGCCTCGCCTCCCCCGACCCCCCGCTCCCC
TTATGCCGCTGCCCCTCCGCTGCTCCATGCTCACATCCACGCGTATCAAT
ATCTTGTGGCTTTTTCCATTCCATATGTAGGCATCGGTCCGAGGACTTGG
AGTCTGTAATTTGCACAAGGAAGGGAAAGGCTGGGAGTAACAACATTTGC
CCTCTCGCTCAACGTGCGACTCTGCCTTCGACTCAGACCTTCTAGTTAGG
CTCCCAATTTAAAGGCAGCAGCCTCTGTTGTACGACCACAAATATGAGCA
ACCTAACGCGGCTATTTGTCAATGATATAGAGGTATTTGTCCCTCCCAAT
ACTACGGTGCTGGAGGCGGCTGAGAAAGTAGGCGTGCAGGTGCCTCGGTT
CTGCTACCACCCGGCCCTCTCGATTGCCGGCAACTGCCGCATGTGCCTGG
TCGAGATCGAGCGCACGCCAAAGCCCGTGGCTTCTTGCGCGATGCCCGTC
ATGAAGGACATGAAAGTCTTCACGAACAGCCCCCTTGTCAAGAAGGCCCG
GGAGGCCGTCCTCGAGTTCCTGCTCTTGAACCACCCCCTGGACTGCCCCA
TTTGCGATCAGGGCGGGGAGTGCGACCTCCAGGACCAGACGATGCTCTAT
GCCTCGGACCGCTCGCGCTTCTACGAGTTTAAACGGGGCGTGGAGGACAA
GAATCTGGGTCCTTTCATCAAGACGATCATGACCCGCTGCATCCATTGCA
CCCGCTGCGTCCGATTCGCGGACGAGATCGCGGGCGTGGGGGACATGGGG
ACGACCAACCGCGGGCGTGACACGGAGATCGGCACCTACATCGGGAAGGC
CTTTGAGTCGGAGGTGTCTGGAAATGTGATTGATCTCTGCCCGGTGGGGG
CTCTCACGGGCAAGACCTACTCCTTCCCCCTCTCCACCTCCTCTGCCGCC
TCCACCGCGCTGGCCGCCCGCGCCACCGCCCGGCCCTTGTCCATGCCGCA
ACGCCCAGCTCTCACACCTGGACTAAACACTGCTCCTTTGAAGCCGTCCT
ACCCCCCGGCCTCGCAAGGCGCGGCGATGGGTGTCATGTCCCGTCGCGCG
CTTTCCTGCTCTTTCACCTCTGTATTCCATTTGCAGAAGGCTGGCATGGC
GCCTCAGGATTTTCAGAAGGTGACAAGCCTTTTCAAGCGGTCGGTCATAC
TTCCCATGGCTGCCTTGATTTCAGGTGCTGCCGTGGCCTCCGTGGGTGCT
AGTGTCTGAATAATAAATAGGAGGGCCTGGGTGGAAGAGACCCATGCCTC
TCTGTGTGAAGGCAGTGGGGAGGTGGTGCGGAGGGCTGGGGAAGGCGCTG
GAATGATAACGGACACCGCGGCCGTTTCTTTTTAGGAACTGAGAATGCGT
GAAATTAGAGACTTATGCCCGAAGAAGGAAATATTAAGAATGATACACAA
CCGTAGGCGCGA back to topprotein sequence of rna245 >rna245-protein ID=rna245-protein|Name=rna245|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MVWPTSWQIPCHASCLVLYIHRMVFKLSYFAFRSGAGRWMYTLVLKCGRL
RSGPAYRMIALSASGESPFIDFSNCRDNTLDSSSIRVLPDVITIEEEARL
VAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVIL
QTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIM
QLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEER
WVDGRRVKRSRRLSLIFRDEREDQGRREEACETDMKKKQHE back to topmRNA from alignment at CM002455.1:623949..625094- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna245 ID=rna245|Name=rna245|organism=Nannochloropsis gaditana|type=mRNA|length=1146bp|location=Sequence derived from alignment at CM002455.1:623949..625094- (Nannochloropsis gaditana)
AACGTTTAACCACTCCTTTTCACGTGTCAGGAAGTACGGGGCCTTGACGT
ATGTGGCGGCGCCATGCGTAATATACTACGGATTGTTTTTTGTTTTCCGC
AACGAAACTTGAGCAGCACTTGACTGCAAGTTAACCTTCATAACGAAGAC
GAACAGACATCTAAAAGAGTAGCAGGGGTGGTGTGTAAAAGAACATCGTC
ACTCCTGCCTACGGTGCGGGCGGCAACATCACAATCGCCCAAACCTCCCC
ATCTTCAAAAAATGGTATGGCCCACGTCGTGGCAAATACCTTGTCATGCG
TCTTGCTTAGTACTGTATATCCACAGAATGGTCTTTAAACTCTCTTACTT
TGCTTTTCGCTCAGGCGCTGGGCGGTGGATGTATACTCTGGTATTGAAAT
GCGGGAGACTACGATCCGGCCCGGCATATCGTATGATAGCTCTGTCTGCA
TCAGGGGAGTCTCCGTTCATAGACTTTTCGAATTGCAGAGACAATACGTT
GGACTCTTCTTCCATTCGTGTTCTACCCGACGTCATAACAATTGAAGAAG
AGGCTCGCCTTGTTGCGGAGTTGGAAGGAAACATGCGTCGACGGCGGTAC
GTTGCCAATCATTGGGACTCAGTCATAGAGAGGTACCGCGAGGTGGAAAA
GCGGGCATGGATTGACCCACTTAATGCAAAAATAGCGCAGCGAATCAAGA
GCGTCATCCTTCAGACATTGAATAAATCATTGGCGACGCGATTTTTGCCC
GTCCACGTCATTGATCTTGCCGAGGACGGCTTCATAAAGCCTCACGTTGA
CTCGAGCAAATTCAGCGGAGGCCTCGTCTGCGGCTTATCCTTGTGCTCTT
CCGCCATCATGCAGCTCAAAGGCGACGTGGAGCAGGGCCAAAACCCGGAT
TCAATCGTCCGCCTGCTACTCCGGCCTCGCTCTTTGTACATCCTGTGTGG
AAACGCTCGGTACAGGTACGCCCATGAGATCTTGGCCACACGTCCAGAGG
GGGAGGAGCGTTGGGTCGACGGACGGAGAGTGAAGCGGTCGCGCCGCTTG
TCTCTCATCTTCAGGGACGAAAGGGAGGATCAAGGGAGGAGAGAAGAAGC
ATGTGAAACGGACATGAAGAAAAAGCAACACGAGTGACGCCAAGCT back to topCoding sequence (CDS) from alignment at CM002455.1:623949..625094- >rna245 ID=rna245|Name=rna245|organism=Nannochloropsis gaditana|type=CDS|length=876bp|location=Sequence derived from alignment at CM002455.1:623949..625094- (Nannochloropsis gaditana)
ATGGTATGGCCCACGTCGTGGCAAATACCTTGTCATGCGTCTTGCTTAGT
ACTGTATATCCACAGAATGGTCTTTAAACTCTCTTACTTTGCTTTTCGCT
CAGGCGCTGGGCGGTGGATGTATACTCTGGTATTGAAATGCGGGAGACTA
CGATCCGGCCCGGCATATCGTATGATAGCTCTGTCTGCATCAGGGGAGTC
TCCGTTCATAGACTTTTCGAATTGCAGAGACAATACGTTGGACTCTTCTT
CCATTCGTGTTCTACCCGACGTCATAACAATTGAAGAAGAGGCTCGCCTT
GTTGCGGAGTTGGAAGGAAACATGCGTCGACGGCGGTACGTTGCCAATCA
TTGGGACTCAGTCATAGAGAGGTACCGCGAGGTGGAAAAGCGGGCATGGA
TTGACCCACTTAATGCAAAAATAGCGCAGCGAATCAAGAGCGTCATCCTT
CAGACATTGAATAAATCATTGGCGACGCGATTTTTGCCCGTCCACGTCAT
TGATCTTGCCGAGGACGGCTTCATAAAGCCTCACGTTGACTCGAGCAAAT
TCAGCGGAGGCCTCGTCTGCGGCTTATCCTTGTGCTCTTCCGCCATCATG
CAGCTCAAAGGCGACGTGGAGCAGGGCCAAAACCCGGATTCAATCGTCCG
CCTGCTACTCCGGCCTCGCTCTTTGTACATCCTGTGTGGAAACGCTCGGT
ACAGGTACGCCCATGAGATCTTGGCCACACGTCCAGAGGGGGAGGAGCGT
TGGGTCGACGGACGGAGAGTGAAGCGGTCGCGCCGCTTGTCTCTCATCTT
CAGGGACGAAAGGGAGGATCAAGGGAGGAGAGAAGAAGCATGTGAAACGG
ACATGAAGAAAAAGCAACACGAGTGA back to top
|