EWM30513.1, cds179 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|585113177|gb|EWM30513.1| (thioredoxin [Nannochloropsis gaditana]) HSP 1 Score: 212.231 bits (539), Expect = 1.054e-69 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 Query: 1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK Sbjct: 1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|760440895|ref|XP_011397516.1| (Thioredoxin H-type [Auxenochlorella protothecoides] >gi|675352188|gb|KFM24628.1| Thioredoxin H-type [Auxenochlorella protothecoides]) HSP 1 Score: 139.428 bits (350), Expect = 1.084e-40 Identity = 67/105 (63.81%), Postives = 88/105 (83.81%), Query Frame = 0 Query: 2 VKIVSNKAEFYEVLNSAGN--KAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104 V +V++KAE+ +VLN A N KAVIVDFFATWCGPC++I+PYF+ELS+ + DVVF+K+DVD+ EEVA GI+AMPTFQV++ G+KV EL+GA+KDKL LVE + Sbjct: 6 VVVVNSKAEWDQVLNEAKNSGKAVIVDFFATWCGPCRLISPYFQELSSNYDDVVFVKLDVDQVEEVAQALGITAMPTFQVFQSGEKVDELIGASKDKLKSLVEKY 110
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|545372342|ref|XP_005650649.1| (thioredoxin [Coccomyxa subellipsoidea C-169] >gi|384252629|gb|EIE26105.1| thioredoxin [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 138.272 bits (347), Expect = 2.614e-40 Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 0 Query: 2 VKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVE 102 V +V + E+ + L AG+K VIVDF ATWCGPC++IAP FE+LSTK+P VVF+KVDVD+NE VAA GISAMPTFQV+KDGKK+ E++GA+ D L LVE Sbjct: 6 VHVVETELEWNQKLKEAGSKPVIVDFTATWCGPCRIIAPVFEQLSTKYPSVVFLKVDVDKNEAVAAACGISAMPTFQVFKDGKKIHEMVGASADNLEQLVE 106
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|391358072|gb|AFM43654.1| (thioredoxin 1 [Mytilus galloprovincialis]) HSP 1 Score: 132.109 bits (331), Expect = 6.363e-38 Identity = 59/105 (56.19%), Postives = 85/105 (80.95%), Query Frame = 0 Query: 1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105 MVK++ +KAEF V+ +G+ ++VDFFATWCGPC IAP +++LS ++ D +F+KVDVDE E+VAA +GISAMPTFQ YK+G KV E++GA+++KL G++E +K Sbjct: 1 MVKVIGSKAEFDGVVKGSGDTLIVVDFFATWCGPCVQIAPVYQKLSDEYSDCIFLKVDVDEVEDVAAESGISAMPTFQCYKNGNKVDEIVGASEEKLRGMIEKNK 105
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|551668784|ref|XP_005837151.1| (hypothetical protein GUITHDRAFT_85403 [Guillardia theta CCMP2712] >gi|428181307|gb|EKX50171.1| hypothetical protein GUITHDRAFT_85403 [Guillardia theta CCMP2712]) HSP 1 Score: 132.494 bits (332), Expect = 2.029e-37 Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 0 Query: 4 IVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104 +++ + EF + L SAG+K V++DFFATWCGPCK+I+P+F ELS K+P VVF KVDVD+NEE A GISAMPTFQ YK+G V + GA+K+ LL ++ H Sbjct: 5 VLNTRKEFDDCLKSAGSKLVVIDFFATWCGPCKIISPFFHELSEKYPHVVFAKVDVDQNEETAQSCGISAMPTFQFYKNGNLVHTMRGASKEGLLQGIQEH 105
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|926788327|ref|XP_013902637.1| (Thioredoxin H-type [Monoraphidium neglectum] >gi|761973355|gb|KIZ03618.1| Thioredoxin H-type [Monoraphidium neglectum]) HSP 1 Score: 129.798 bits (325), Expect = 5.831e-37 Identity = 62/100 (62.00%), Postives = 75/100 (75.00%), Query Frame = 0 Query: 5 VSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104 V +KAE+ + L AG+KA+IVDF A WCGPC+ I PYF +LST+F D+VF+KVDVD N EVA GISAMPTFQV+K KV E +GA+KDKLL L H Sbjct: 9 VGSKAEWDKQLADAGDKAIIVDFTAVWCGPCQAIGPYFVQLSTQFEDLVFLKVDVDANSEVAGACGISAMPTFQVFKHRAKVDEFIGASKDKLLALCTKH 108
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|970913225|ref|XP_015122913.1| (PREDICTED: thioredoxin-2-like [Diachasma alloeum]) HSP 1 Score: 128.257 bits (321), Expect = 2.258e-36 Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 0 Query: 1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105 MV I+ NK + + L AG+K VI+DFFATWCGPCKVIAP FEELS +FPD+VF+KVDVD+NEE+A I +MPTF K+GK V + GA+ K+ +EAHK Sbjct: 1 MVVIIENKNDLIKRLEEAGDKLVIIDFFATWCGPCKVIAPQFEELSKEFPDIVFLKVDVDDNEEIATEYEIGSMPTFVFIKNGKTVHQFTGASLQKIKDGIEAHK 105
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|532137592|pdb|2YPM|A (Chain A, Crystal Structure Of Ancestral Thioredoxin Relative To Last Animal And Fungi Common Ancestor (lafca) From The Precambrian Period) HSP 1 Score: 127.872 bits (320), Expect = 2.780e-36 Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 0 Query: 1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPD-VVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104 MV V+NK EF +L+ A +K V+VDF ATWCGPCK+IAP FEELS ++PD VVF+KVDVDE E+VAA GISAMPTFQ +K+GKKV EL GA ++KL +++ H Sbjct: 1 MVIQVTNKDEFESILSEA-DKLVVVDFTATWCGPCKMIAPKFEELSEEYPDNVVFLKVDVDEVEDVAAEYGISAMPTFQFFKNGKKVDELTGANQEKLKAMIKKH 104
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|929750335|ref|XP_014150151.1| (thioredoxin 1 [Sphaeroforma arctica JP610] >gi|906942599|gb|KNC76249.1| thioredoxin 1 [Sphaeroforma arctica JP610]) HSP 1 Score: 127.102 bits (318), Expect = 7.104e-36 Identity = 64/104 (61.54%), Postives = 75/104 (72.12%), Query Frame = 0 Query: 1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104 MV+ V +K EFY+ + K IVDFFA WCGPCK+IAP+ EEL KF DV FIKVDVDE EE+A GI+AMPTFQ Y+DGKKV E+ GA K KL L+ AH Sbjct: 1 MVRKVESKEEFYQ--QTGLLKLTIVDFFAVWCGPCKMIAPFLEELDAKFADVDFIKVDVDELEELAGECGITAMPTFQFYRDGKKVAEVKGANKAKLEDLISAH 102
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|672822943|gb|KFH67837.1| (thioredoxin 1 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 125.561 bits (314), Expect = 2.561e-35 Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 0 Query: 1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVE 102 MVKI+ + AEF E++NS +K VIVDF+A WCGPCKVIAP FE+ ST+F DV F+KV+VD+ EV+ AGI AMPTFQ Y +G KVGE++GA KL L+E Sbjct: 1 MVKIIESTAEFNELINS--DKKVIVDFYADWCGPCKVIAPKFEKFSTEFADVTFVKVNVDDLGEVSQTAGIRAMPTFQTYHNGAKVGEVLGADLSKLKKLIE 100 The following BLAST results are available for this feature:
BLAST of EWM30513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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