EWM30513.1, cds179 (CDS) Nannochloropsis gaditana

Overview
NameEWM30513.1
Unique Namecds179
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:470680..470847 -
Alignment locationCM002455.1:470378..470527 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30513.1
Productthioredoxin
Orig transcript idgnl|cribi|Naga_100013g39.9801.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:470680..470847 -
CM002455.1supercontigCM002455.1:470378..470527 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
IPR005746Thioredoxin
Homology
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|585113177|gb|EWM30513.1| (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 212.231 bits (539), Expect = 1.054e-69
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
Query:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105
            MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK
Sbjct:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|760440895|ref|XP_011397516.1| (Thioredoxin H-type [Auxenochlorella protothecoides] >gi|675352188|gb|KFM24628.1| Thioredoxin H-type [Auxenochlorella protothecoides])

HSP 1 Score: 139.428 bits (350), Expect = 1.084e-40
Identity = 67/105 (63.81%), Postives = 88/105 (83.81%), Query Frame = 0
Query:    2 VKIVSNKAEFYEVLNSAGN--KAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104
            V +V++KAE+ +VLN A N  KAVIVDFFATWCGPC++I+PYF+ELS+ + DVVF+K+DVD+ EEVA   GI+AMPTFQV++ G+KV EL+GA+KDKL  LVE +
Sbjct:    6 VVVVNSKAEWDQVLNEAKNSGKAVIVDFFATWCGPCRLISPYFQELSSNYDDVVFVKLDVDQVEEVAQALGITAMPTFQVFQSGEKVDELIGASKDKLKSLVEKY 110          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|545372342|ref|XP_005650649.1| (thioredoxin [Coccomyxa subellipsoidea C-169] >gi|384252629|gb|EIE26105.1| thioredoxin [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 138.272 bits (347), Expect = 2.614e-40
Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 0
Query:    2 VKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVE 102
            V +V  + E+ + L  AG+K VIVDF ATWCGPC++IAP FE+LSTK+P VVF+KVDVD+NE VAA  GISAMPTFQV+KDGKK+ E++GA+ D L  LVE
Sbjct:    6 VHVVETELEWNQKLKEAGSKPVIVDFTATWCGPCRIIAPVFEQLSTKYPSVVFLKVDVDKNEAVAAACGISAMPTFQVFKDGKKIHEMVGASADNLEQLVE 106          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|391358072|gb|AFM43654.1| (thioredoxin 1 [Mytilus galloprovincialis])

HSP 1 Score: 132.109 bits (331), Expect = 6.363e-38
Identity = 59/105 (56.19%), Postives = 85/105 (80.95%), Query Frame = 0
Query:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105
            MVK++ +KAEF  V+  +G+  ++VDFFATWCGPC  IAP +++LS ++ D +F+KVDVDE E+VAA +GISAMPTFQ YK+G KV E++GA+++KL G++E +K
Sbjct:    1 MVKVIGSKAEFDGVVKGSGDTLIVVDFFATWCGPCVQIAPVYQKLSDEYSDCIFLKVDVDEVEDVAAESGISAMPTFQCYKNGNKVDEIVGASEEKLRGMIEKNK 105          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|551668784|ref|XP_005837151.1| (hypothetical protein GUITHDRAFT_85403 [Guillardia theta CCMP2712] >gi|428181307|gb|EKX50171.1| hypothetical protein GUITHDRAFT_85403 [Guillardia theta CCMP2712])

HSP 1 Score: 132.494 bits (332), Expect = 2.029e-37
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 0
Query:    4 IVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104
            +++ + EF + L SAG+K V++DFFATWCGPCK+I+P+F ELS K+P VVF KVDVD+NEE A   GISAMPTFQ YK+G  V  + GA+K+ LL  ++ H
Sbjct:    5 VLNTRKEFDDCLKSAGSKLVVIDFFATWCGPCKIISPFFHELSEKYPHVVFAKVDVDQNEETAQSCGISAMPTFQFYKNGNLVHTMRGASKEGLLQGIQEH 105          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|926788327|ref|XP_013902637.1| (Thioredoxin H-type [Monoraphidium neglectum] >gi|761973355|gb|KIZ03618.1| Thioredoxin H-type [Monoraphidium neglectum])

HSP 1 Score: 129.798 bits (325), Expect = 5.831e-37
Identity = 62/100 (62.00%), Postives = 75/100 (75.00%), Query Frame = 0
Query:    5 VSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104
            V +KAE+ + L  AG+KA+IVDF A WCGPC+ I PYF +LST+F D+VF+KVDVD N EVA   GISAMPTFQV+K   KV E +GA+KDKLL L   H
Sbjct:    9 VGSKAEWDKQLADAGDKAIIVDFTAVWCGPCQAIGPYFVQLSTQFEDLVFLKVDVDANSEVAGACGISAMPTFQVFKHRAKVDEFIGASKDKLLALCTKH 108          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|970913225|ref|XP_015122913.1| (PREDICTED: thioredoxin-2-like [Diachasma alloeum])

HSP 1 Score: 128.257 bits (321), Expect = 2.258e-36
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 0
Query:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAHK 105
            MV I+ NK +  + L  AG+K VI+DFFATWCGPCKVIAP FEELS +FPD+VF+KVDVD+NEE+A    I +MPTF   K+GK V +  GA+  K+   +EAHK
Sbjct:    1 MVVIIENKNDLIKRLEEAGDKLVIIDFFATWCGPCKVIAPQFEELSKEFPDIVFLKVDVDDNEEIATEYEIGSMPTFVFIKNGKTVHQFTGASLQKIKDGIEAHK 105          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|532137592|pdb|2YPM|A (Chain A, Crystal Structure Of Ancestral Thioredoxin Relative To Last Animal And Fungi Common Ancestor (lafca) From The Precambrian Period)

HSP 1 Score: 127.872 bits (320), Expect = 2.780e-36
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 0
Query:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPD-VVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104
            MV  V+NK EF  +L+ A +K V+VDF ATWCGPCK+IAP FEELS ++PD VVF+KVDVDE E+VAA  GISAMPTFQ +K+GKKV EL GA ++KL  +++ H
Sbjct:    1 MVIQVTNKDEFESILSEA-DKLVVVDFTATWCGPCKMIAPKFEELSEEYPDNVVFLKVDVDEVEDVAAEYGISAMPTFQFFKNGKKVDELTGANQEKLKAMIKKH 104          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|929750335|ref|XP_014150151.1| (thioredoxin 1 [Sphaeroforma arctica JP610] >gi|906942599|gb|KNC76249.1| thioredoxin 1 [Sphaeroforma arctica JP610])

HSP 1 Score: 127.102 bits (318), Expect = 7.104e-36
Identity = 64/104 (61.54%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVEAH 104
            MV+ V +K EFY+   +   K  IVDFFA WCGPCK+IAP+ EEL  KF DV FIKVDVDE EE+A   GI+AMPTFQ Y+DGKKV E+ GA K KL  L+ AH
Sbjct:    1 MVRKVESKEEFYQ--QTGLLKLTIVDFFAVWCGPCKMIAPFLEELDAKFADVDFIKVDVDELEELAGECGITAMPTFQFYRDGKKVAEVKGANKAKLEDLISAH 102          
BLAST of EWM30513.1 vs. NCBI_GenBank
Match: gi|672822943|gb|KFH67837.1| (thioredoxin 1 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 125.561 bits (314), Expect = 2.561e-35
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    1 MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFPDVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGLVE 102
            MVKI+ + AEF E++NS  +K VIVDF+A WCGPCKVIAP FE+ ST+F DV F+KV+VD+  EV+  AGI AMPTFQ Y +G KVGE++GA   KL  L+E
Sbjct:    1 MVKIIESTAEFNELINS--DKKVIVDFYADWCGPCKVIAPKFEKFSTEFADVTFVKVNVDDLGEVSQTAGIRAMPTFQTYHNGAKVGEVLGADLSKLKKLIE 100          
The following BLAST results are available for this feature:
BLAST of EWM30513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113177|gb|EWM30513.1|1.054e-69100.00thioredoxin [Nannochloropsis gaditana][more]
gi|760440895|ref|XP_011397516.1|1.084e-4063.81Thioredoxin H-type [Auxenochlorella protothecoides... [more]
gi|545372342|ref|XP_005650649.1|2.614e-4064.36thioredoxin [Coccomyxa subellipsoidea C-169] >gi|3... [more]
gi|391358072|gb|AFM43654.1|6.363e-3856.19thioredoxin 1 [Mytilus galloprovincialis][more]
gi|551668784|ref|XP_005837151.1|2.029e-3757.43hypothetical protein GUITHDRAFT_85403 [Guillardia ... [more]
gi|926788327|ref|XP_013902637.1|5.831e-3762.00Thioredoxin H-type [Monoraphidium neglectum] >gi|7... [more]
gi|970913225|ref|XP_015122913.1|2.258e-3658.10PREDICTED: thioredoxin-2-like [Diachasma alloeum][more]
gi|532137592|pdb|2YPM|A2.780e-3662.86Chain A, Crystal Structure Of Ancestral Thioredoxi... [more]
gi|929750335|ref|XP_014150151.1|7.104e-3661.54thioredoxin 1 [Sphaeroforma arctica JP610] >gi|906... [more]
gi|672822943|gb|KFH67837.1|2.561e-3560.78thioredoxin 1 [Mortierella verticillata NRRL 6337][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna179rna179Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications