rna179, rna179 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna179
Unique Name	rna179
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1137
Alignment location	CM002455.1:469960..471232 -

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Properties


Property Name	Value
Product	thioredoxin
Orig transcript id	gnl\|cribi\|Naga_100013g39.9801.mrna
Orig protein id	gnl\|cribi\|Naga_100013g39.9801
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:469960..471232 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g39	gene170	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna179	rna179-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30513.1	cds179	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:469960..471232-
coding sequence from alignment at CM002455.1:469960..471232-

mRNA sequence

>rna179 ID=rna179|Name=rna179|organism=Nannochloropsis gaditana|type=mRNA|length=1137bp
ATGGATTCGAACCGGCCAACGAAGCGGCTTATCCATCATTACATCAAGCA
ACACCGGGGGTGGCACAACGTTTGTTCCTTGACCGCCGTCCGGAAGGCGC
ACATGCGTGTGATTGTCAGTGGGATAGCAGTACTAGTCACGTGCTTACTC
GTCACCAATTTGATATTAGAGCGTAGGAATGGTCGTGGGGGCAATTTTCT
GCATCTTCTTCGGTTAGGTGGCATAAACGCGGGGGCGCCTGCTCGACTAC
GACAAGACCTGCCTTTGCTGGGCAAGGCGCGGAGTTATGTATCGTATGAC
TGTGGAGGTGGTTGCGCCAAATCTAACATTCTCCTTTTGCAAACGTCGGA
CGGAGGCTCCACGAGCACTTACTCCAAGATGCTGGACGCTCTCCAAAGCA
CTCATCTCGCTTACGCTGCTCAACGTGGCTTCCACTACTTGCGGTGGGAC
GGGCTGATGAAAGGACGACAAGCCTGGCATGCCACCTACAATCGAATTTT
TCTACTGCACGCGCTGCATGAGTCGAGACGGTATGAGTGGGTACTCTTCC
TGGATCCAGACGCCATAGTCCGGGATCCACGCTTGAATGTGGAGGATTTG
CTCGACGATCGGTACGCCGTGCTGGGTTGCCGAGGTGGTGATGATCCCGA
CCTATTCTGGGATATAAATATTGGCGTTGCATTCTTCAATCTGCGGCACA
AGGAATTTGGAAGTTTGATGAAGGAATGGATGGCAGCCGTGCAAAAAGTG
GCGCCGTGGACCTTGGAAAGGGGGGGGGGCACGGCAGCGTACATCACCAT
GGGGCAAGGACCGCGCGTGCGGGACGATCAGCAGATGTTCCACGACGTGC
TGTCTAGACATCCTATGGGAAAGGCGCTTGTGAAGCGCTACTATAGCGGA
GAAGATGCGGTCTTATTCAATTACAACGATGGCAAATACGTAGCTCACTT
GACACGTGCAGATAATCTGGATCAGGACGCTCGTCTCCTTAGACTTTTAG
TGCTGAAGGCGGCCTTTTTCAAATCCATGGGAGAGATGGCCGAGGAGGAC
ATTCAGGGGGGTCGTCGTGTCGTAGAGGCGCGACAGCGCGAAGGCGTGGA
GAAAGTCAAGGCCCCAGGGCACGAAGGTACTCACTAA

protein sequence of rna179

>rna179-protein ID=rna179-protein|Name=rna179|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MVKIVSNKAEFYEVLNSAGNKAVIVDFFATWCGPCKVIAPYFEELSTKFP
DVVFIKVDVDENEEVAAFAGISAMPTFQVYKDGKKVGELMGAAKDKLLGL
VEAHK

mRNA from alignment at CM002455.1:469960..471232-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna179 ID=rna179|Name=rna179|organism=Nannochloropsis gaditana|type=mRNA|length=1273bp|location=Sequence derived from alignment at CM002455.1:469960..471232- (Nannochloropsis gaditana)
GAGGCGAGGCAAACCCGCCGTCAGGGCCTTGGACAACAGGAAGTCTGGGA
TTTTTCAGGGTGGAAAGGACAAGTCGTTTCTTAAAGACATGGCATGTTTT
GATCTTGACTGTGTGGGACGTATGCTTGGTGAGTGATGCCGGAATTGGAA
GAAGCACGCTGGCCTCCTTACCTTTCTTCAAATCGAGGAAGAACAACGAC
CTCTATGGAGCGCCCCACTTTTTTTCATAGTAGTATGCTAAATAAGCAGA
GTTTGGAACGACGTGACAAAGTTCCACGAGAAATGGCATGTGCGATTAGT
TTTTTGGGGGTTCATCGCACTGATCCACCCTCCTGCCCACGGCTTATCTA
TTTCCCTGCAGCGTCAAGAAGACAAATATTCAACAATGGTAAAGATTGTA
TCTAACAAGGCAGAATTCTACGAGGTGTTGAACAGCGCAGGCAACAAGGC
CGTGATTGTGGATTTTTTTGCCACTTGGTGCGGGCCTTGCAAGGTGATTG
CTCCTTATTTTGAGGAACTATCGACGAAATTTCCTGACGTCGTTTTCATC
AAGGTACGATCCTGAATGCAATAACGATGCGTCCCTCAGCCCGCATCGAT
ATATCCAAGGTCTTTAAAGGTCTATCGTAAGAAGGCGACGAATTGCCAGC
TCGTCACTCACACGCAAATTTCTCTTTTTCCACCTGTGCTCCCTCGGCCG
CCCAGGTCGATGTGGATGAGAATGAGGAAGTTGCAGCTTTTGCGGGAATA
TCGGCCATGCCTACCTTTCAAGTGTACAAGGATGGAAAGAAAGTTGGGGA
GCTGATGGGTGCTGCCAAGGATAAGCTCTTGGGCCTTGTGGAAGCGCACA
AATAACTCGACTTCGAGATGCAGAGAAAATCGTACGGAGCATATATTTCG
CGCGTAGTTCTATACTGACGAGGGTGCGAATACGAAAAAGGGAAAACGAG
TCTTCGTGGAATTAAAGCAGAGCAAGACGTAGTTGCAAGGTCGATGGAAG
CTTTGGGCAGAGGTACAATGCACATCTCTTTTTCAAATTAGAAAAGCTTG
CTTTTTTATTGGAGGCTGCCTTTGAAAGAGAGATAATACGCTGGGGTGGA
ATCTTTTTTCGCGGGGATGGAGCTTTTGAAAACGAACGCCAGGGAGAAAT
GCAAAAAGGATTACAGACGTGGTGCAGCTTGCAATTAAAAGTCACTTGTG
CGGAGCTCTGAATCAGCATGCCGATTGCTCACGAAGGATAAAATTAAGAT
TATGCTCGCACGTCTTCGTCTTC

Coding sequence (CDS) from alignment at CM002455.1:469960..471232-

>rna179 ID=rna179|Name=rna179|organism=Nannochloropsis gaditana|type=CDS|length=636bp|location=Sequence derived from alignment at CM002455.1:469960..471232- (Nannochloropsis gaditana)
GTCGATGTGGATGAGAATGAGGAAGTTGCAGCTTTTGCGGGAATATCGGC
CATGCCTACCTTTCAAGTGTACAAGGATGGAAAGAAAGTTGGGGAGCTGA
TGGGTGCTGCCAAGGATAAGCTCTTGGGCCTTGTGGAAGCGCACAAATAA
ATGGTAAAGATTGTATCTAACAAGGCAGAATTCTACGAGGTGTTGAACAG
CGCAGGCAACAAGGCCGTGATTGTGGATTTTTTTGCCACTTGGTGCGGGC
CTTGCAAGGTGATTGCTCCTTATTTTGAGGAACTATCGACGAAATTTCCT
GACGTCGTTTTCATCAAGGTCGATGTGGATGAGAATGAGGAAGTTGCAGC
TTTTGCGGGAATATCGGCCATGCCTACCTTTCAAGTGTACAAGGATGGAA
AGAAAGTTGGGGAGCTGATGGGTGCTGCCAAGGATAAGCTCTTGGGCCTT
GTGGAAGCGCACAAATAAATGGTAAAGATTGTATCTAACAAGGCAGAATT
CTACGAGGTGTTGAACAGCGCAGGCAACAAGGCCGTGATTGTGGATTTTT
TTGCCACTTGGTGCGGGCCTTGCAAGGTGATTGCTCCTTATTTTGAGGAA
CTATCGACGAAATTTCCTGACGTCGTTTTCATCAAG

Synonyms

Publications