rna111, rna111 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna111
Unique Name	rna111
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1764
Alignment location	CM002455.1:296629..298725 +

Link to JBrowse

Properties


Property Name	Value
Product	pyrroline-5-carboxylate reductase
Orig transcript id	gnl\|cribi\|Naga_100033g35.8416.mrna
Orig protein id	gnl\|cribi\|Naga_100033g35.8416
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:296629..298725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g35	gene108	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna111	rna111-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30577.1	cds111	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:296629..298725+
coding sequence from alignment at CM002455.1:296629..298725+

mRNA sequence

>rna111 ID=rna111|Name=rna111|organism=Nannochloropsis gaditana|type=mRNA|length=1764bp
ATGCCCCTACCTTTGTTTGTTAAGCAAGATTCTAATGTGCGATCGAAGGC
CGCTCCACACCATGTCAATGAGGGGAGGACCCGCCCTGTGCATGTCTTCA
GAAGTCTACTGACAGGCGTCGCCCTCCTTGGTCTGGCCACAGCTATTGCT
TGTGTCACCACGAGTGATCCGGTTGAGCGCACCCTGACAGGGACGTTCGT
ATCATGCATAGTTCTGGCTGCGATAGCGTACAAGGAGGTCCTCTTCTCGC
TAGGAAGTATGTCATTCGGAAGCAAGACTTACGATGCAAGAAAAGTTGAC
GCAACTTCTGCATCGCTGGTATTAAGTCCAGTGCAGCAGCAGGAGTTTGA
CAATTTCCAAAGGCGGTTTTTAATGGTGCAATTGCTGGCGACTTTTGTGG
ATTTTCTTCAGGGGCCATACCTGTACAAGCTGTACGAAAACTACAACTAT
GACATGAACGACATCGCGACCCTGTACCTGCTCGGTTTCTGCTCCTCCGC
CCTCTCCTCCCCCTTCGCGGGCATCCTTGCCGACATGTACGGCCGGCGCC
TTGGATGCATGGCCTTTGCCGTCCTCCAGACCGCCTCGTGCCTTCTGCTT
CACTACCCCTCCTTCGCGCTCCTGGCCATGGGCCGCGTGCTCTCGGGCAT
TGCCACGTCCTTCTTGTCGACCTGCTTTGAAGCCTGGATGATCTCGGAGC
ACAACCGGCGTTCCTTTCCCCCGGCTCTCCTGACCAATACCTTCTCCATT
TACGTCTTCATGATGGGGGTGGCGGCGGTGGCCAGTGGGGGGGTGGCGGG
GCTAGCGCAGGAACAGGGCGGGGTACTGGCCGCCTTTGATGTGTGTGCCG
CCGCCGCGCTCGGGCTGGCAATACTCATCCCTCTGCTTTGGACGGAAGAG
AACTATGGCAGTGGAAGGAAAGGGGAGAGCGGCTTGAGGAAAACATTGGT
GGAAAATGCGCCCACGTCCATAGTGGATCCAAGTTCAGTACCTGCGGCTG
CTCCTCCCAGCACTTCCCCTTCCTGGGTACCCGACTCCCCCAATTTTTTA
TCTCGAAAGACTTTCCCTCGCGGTTTGCTCAATATTCTAGAAGATGGCAA
AAGAGAGGTTGTCTGGCTGGGGCTGACGCAAGCGTTTTTTGAAGCTGCAA
TGTTCACTTGGGTCTTCATGTGGACCCCCTCCCTTGACACGGGCGAGATC
CCCTCCTTGAACCTTGGCCTTGTCTTCGCCACTCTCATGCTAGGAGTCAT
GTGCGGGTCCTCTGTCTTTCGGATTTTGACAGGGGATGGAGGGGAAGGGA
AGGGATGGAAAGGAGGAGGGGGTTGGAGTCCAGAAACTGTACTACGTGGT
TCGTTAGCATTGGGCGGAGTCGTGTTGGGGATCGCATCTTGGCCACGACT
GTCAGCTAAGTGGCTTCTAGTCTTATTCACAATCTTTGAAGCGTCGGTTG
GTGTGTATTTTGCTGCGATGGGCACTATACGCGCACGTATTATACCTGAA
GAAGTGCGAGCAACGGTTATGAATCTTATCCGCCTCGTTCTGAACCTGTT
GGTTGTATCCATGTACATAGGCCCTGTGCGACTGGCACTTCCAATAGAGG
AGAAGAGACCGCTGGTATTGGGTCTGTGCAGTGCCATGATTTTTATCGCC
AGTGTATGTCATGCTCAGTTGTTAGTTGGGAGGGAGATGCATGGTGAAGA
ACAGAAAACGGCGGATGAAAAAATCAGCCATGTAGAACGTACAGACTCGC
ATAAAGCACAATAA

protein sequence of rna111

>rna111-protein ID=rna111-protein|Name=rna111|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MSEAPTRQAPSSSTASSTNASPPHPQHAKPGPLRPAGGAKSGEGEKKFTV
GFIGGGMMASALIRGLVKAGVVPNFAISVSDPYKPMRDKLAAEVGVIAYD
DNIQVIEHAQVIVLAVKPDIIPQVLRELSQRVTRHHLIISIAAGATLQLM
EHQLPDQTRVVRVMPNTPCLVGECAAAFALGGSCLPEDAVLVKRIFSAVG
AAFEVKEKDLNAVTGLSGSGPAYVFMMIEAMADGGVRAGLPRNVAMQLAA
QTVKGAATMVQLTGEHPGVLKDQVASPGGTTITGIEALEKGGLRSTVIGA
VVAAAERSKQLAESSKPTPNPRQT

mRNA from alignment at CM002455.1:296629..298725+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna111 ID=rna111|Name=rna111|organism=Nannochloropsis gaditana|type=mRNA|length=2097bp|location=Sequence derived from alignment at CM002455.1:296629..298725+ (Nannochloropsis gaditana)
GGGTCAAATTTTCTTCGGCGTGCGTACTTGTTTCCTGAGCCAACTAACAC
ACAACAATTCTTCCGTGCCCAAGGAAAAAGGTCTTTTGTGCCCTCCATAA
CTTCGTCACCACGACGCCTGTGTCAACCGTTTTTTTTTGCCAGCGGCGTC
TCCCacttttcttcatcttcctcttagCGCTCAGTATCCTTGTACCCGGG
GCTacattcttctcccctcaaGTACAGCTGCGAATGTCAGAAGCACCCAC
CCGTCAAGCTCCCAGCAGTAGCACTGCCAGTAGTACGAATGCCAGCCCGC
CGCATCCACAGCATGCCAAGCCAGGACCTCTACGTCCCGCCGGGGGGGCG
AAGAGcggcgaaggggaaaagaaatttACCGTAGGGTTTATTGGCGGCGG
AATGATGGCGTCGGCATTGATTAGAGGACTTGTCAAGGCGGGAGTCGTTC
CCAACTTCGCCATCTCTGTGAGCGACCCCTACAAGCCCATGCGGGACAAG
CTTGCTGCGGAAGTCGGAGTAATCGCCTACGACGACAACATCCAAGTTAT
CGAGGTACGTTTCAAATCGATGTGAACAGGGGCGATGATCGTATCCCGGG
CATCATTTACTCGTGAATGACACATGTCTAAAAATTGAATGCGTCGTCTC
GCCCTTTTTTGGACAAAGGGCTGGCCTCTGCCATCTATCCCCGGTCCGTC
CCACACCCTTATTGACACGATTTGTGGCATCTGTGCACCTTCATACACAG
CACGCGCAAGTGATCGTCCTCGCTGTGAAGCCGGACATCATTCCCCAAGT
CCTGCGAGAGCTTTCGCAGCGAGTgacccgccaccacctcatTATCTCCA
TTGCTGCGGGGGCTACTCTGCAGCTTATGGAGCACGTAAGTCAAGGCAAC
CCGTTGTTCCCTGTGCCCTCCAGAGCCCTGCCCCCTGTCATGTCAgtgcc
tcctcccgtgcCAGGCTGAAGGCACACCGCTAGACTCCCGGCAGGTTCGG
CGGCCTCGTCACCGCCGAGCCGCACCGGTCTTGGAGCGTGTGCCtcactt
tccccctctttcctgcctACCACCACAGCAACTCCCCGACCAGACTCGGG
TGGTGCGAGTGATGCCCAACACTCCCTGCCTGGTGGGGGAGTGCGCCGCC
GCATTCGCCTTGGGCGGCTCCTGCCTGCCGGAGGACGCTGTGCTCGTAAA
ACGCATTTTTTCGGCCGTGGGTGCAGCCTTCGAAGTAAAAGAGAAGGATT
TGAACGGTGAGTTTGACGAGCGCACGGACATAGAAGTGAATTGTTTTGGA
TTTCATAAACGAGGGTTGTTTCcgtccaggagggagaggtggaggtaGTC
ATTCTGTCGCCCCCCGTCAGTGTACAAAAACGGGAAGGGTCCCGAACatg
tcctcatcctcgtttTTCTGGGCCACTGCAGCTGTGACAGGACTGAGCGG
GAGTGGGCCGGCCTACGTGTTCATGATGATCGAGGCCATGGCCGATGGCG
GCGTGCGGGCCGGTCTTCCCCGCAATGTGGCTATGCAACTCGCCGCACAG
ACGGTCAAGGGCGCGGCCACCATGGTCCAGCTTACTGGAGAGCATCCAGG
AGTGCTTAAGGATCAAGTGGCCAGCCCGGGAGGTACCACCATCACGGGga
tcgaggccttggagaaagggggtTTGCGATCCACGGTTAtcggggcggtg
gtggccgcAGCGGAGCGATCCAAACAACTGGCAGAGTCGTCGAAGCCGAC
GCCCAACCCGCGGCAAACATAAGTACGGGAAGCTGTtgaagggcaagggc
aaCATTAAAGTCTCGGAAATGCTGACATAAattgagagaggaaaagagca
gTTCAAGGGAGATGGCAACGATTAGAGAGGAGACAAATCATTCAATTGTT
AAACGAAATCAAGCTCTTATTGCAGAAAAGAAGTGATTTGTGTTCTTAGT
TTTTGTTTGGCATTAATTTCTCCTTGCAGACTCAGTCAGTGGATAACAAG
CAACATGAGACGGATGCCTTCTAACGCCACGTTTGCTGCCTTGTTGTCTC
TGGTAAGATAACCTTGCATCCCGAGCCACATAGCTTATGACAATGAA

Coding sequence (CDS) from alignment at CM002455.1:296629..298725+

>rna111 ID=rna111|Name=rna111|organism=Nannochloropsis gaditana|type=CDS|length=3900bp|location=Sequence derived from alignment at CM002455.1:296629..298725+ (Nannochloropsis gaditana)
ATGTCAGAAGCACCCACCCGTCAAGCTCCCAGCAGTAGCACTGCCAGTAG
TACGAATGCCAGCCCGCCGCATCCACAGCATGCCAAGCCAGGACCTCTAC
GTCCCGCCGGGGGGGCGAAGAGcggcgaaggggaaaagaaatttACCGTA
GGGTTTATTGGCGGCGGAATGATGGCGTCGGCATTGATTAGAGGACTTGT
CAAGGCGGGAGTCGTTCCCAACTTCGCCATCTCTGTGAGCGACCCCTACA
AGCCCATGCGGGACAAGCTTGCTGCGGAAGTCGGAGTAATCGCCTACGAC
GACAACATCCAAGTTATCGAGCACGCGCAAGTGATCGTCCTCGCTGTGAA
GCCGGACATCATTCCCCAAGTCCTGCGAGAGCTTTCGCAGCGAGTgaccc
gccaccacctcatTATCTCCATTGCTGCGGGGGCTACTCTGCAGCTTATG
GAGCACCAACTCCCCGACCAGACTCGGGTGGTGCGAGTGATGCCCAACAC
TCCCTGCCTGGTGGGGGAGTGCGCCGCCGCATTCGCCTTGGGCGGCTCCT
GCCTGCCGGAGGACGCTGTGCTCGTAAAACGCATTTTTTCGGCCGTGGGT
GCAGCCTTCGAAGTAAAAGAGAAGGATTTGAACGCTGTGACAGGACTGAG
CGGGAGTGGGCCGGCCTACGTGTTCATGATGATCGAGGCCATGGCCGATG
GCGGCGTGCGGGCCGGTCTTCCCCGCAATGTGGCTATGCAACTCGCCGCA
CAGACGGTCAAGGGCGCGGCCACCATGGTCCAGCTTACTGGAGAGCATCC
AGGAGTGCTTAAGGATCAAGTGGCCAGCCCGGGAGGTACCACCATCACGG
GgatcgaggccttggagaaagggggtTTGCGATCCACGGTTAtcggggcg
gtggtggccgcAGCGGAGCGATCCAAACAACTGGCAGAGTCGTCGAAGCC
GACGCCCAACCCGCGGCAAACATAAATGTCAGAAGCACCCACCCGTCAAG
CTCCCAGCAGTAGCACTGCCAGTAGTACGAATGCCAGCCCGCCGCATCCA
CAGCATGCCAAGCCAGGACCTCTACGTCCCGCCGGGGGGGCGAAGAGcgg
cgaaggggaaaagaaatttACCGTAGGGTTTATTGGCGGCGGAATGATGG
CGTCGGCATTGATTAGAGGACTTGTCAAGGCGGGAGTCGTTCCCAACTTC
GCCATCTCTGTGAGCGACCCCTACAAGCCCATGCGGGACAAGCTTGCTGC
GGAAGTCGGAGTAATCGCCTACGACGACAACATCCAAGTTATCGAGCACG
CGCAAGTGATCGTCCTCGCTGTGAAGCCGGACATCATTCCCCAAGTCCTG
CGAGAGCTTTCGCAGCGAGTgacccgccaccacctcatTATCTCCATTGC
TGCGGGGGCTACTCTGCAGCTTATGGAGCACCAACTCCCCGACCAGACTC
GGGTGGTGCGAGTGATGCCCAACACTCCCTGCCTGGTGGGGGAGTGCGCC
GCCGCATTCGCCTTGGGCGGCTCCTGCCTGCCGGAGGACGCTGTGCTCGT
AAAACGCATTTTTTCGGCCGTGGGTGCAGCCTTCGAAGTAAAAGAGAAGG
ATTTGAACGCTGTGACAGGACTGAGCGGGAGTGGGCCGGCCTACGTGTTC
ATGATGATCGAGGCCATGGCCGATGGCGGCGTGCGGGCCGGTCTTCCCCG
CAATGTGGCTATGCAACTCGCCGCACAGACGGTCAAGGGCGCGGCCACCA
TGGTCCAGCTTACTGGAGAGCATCCAGGAGTGCTTAAGGATCAAGTGGCC
AGCCCGGGAGGTACCACCATCACGGGgatcgaggccttggagaaaggggg
tTTGCGATCCACGGTTAtcggggcggtggtggccgcAGCGGAGCGATCCA
AACAACTGGCAGAGTCGTCGAAGCCGACGCCCAACCCGCGGCAAACATAA
ATGTCAGAAGCACCCACCCGTCAAGCTCCCAGCAGTAGCACTGCCAGTAG
TACGAATGCCAGCCCGCCGCATCCACAGCATGCCAAGCCAGGACCTCTAC
GTCCCGCCGGGGGGGCGAAGAGcggcgaaggggaaaagaaatttACCGTA
GGGTTTATTGGCGGCGGAATGATGGCGTCGGCATTGATTAGAGGACTTGT
CAAGGCGGGAGTCGTTCCCAACTTCGCCATCTCTGTGAGCGACCCCTACA
AGCCCATGCGGGACAAGCTTGCTGCGGAAGTCGGAGTAATCGCCTACGAC
GACAACATCCAAGTTATCGAGCACGCGCAAGTGATCGTCCTCGCTGTGAA
GCCGGACATCATTCCCCAAGTCCTGCGAGAGCTTTCGCAGCGAGTgaccc
gccaccacctcatTATCTCCATTGCTGCGGGGGCTACTCTGCAGCTTATG
GAGCACCAACTCCCCGACCAGACTCGGGTGGTGCGAGTGATGCCCAACAC
TCCCTGCCTGGTGGGGGAGTGCGCCGCCGCATTCGCCTTGGGCGGCTCCT
GCCTGCCGGAGGACGCTGTGCTCGTAAAACGCATTTTTTCGGCCGTGGGT
GCAGCCTTCGAAGTAAAAGAGAAGGATTTGAACGCTGTGACAGGACTGAG
CGGGAGTGGGCCGGCCTACGTGTTCATGATGATCGAGGCCATGGCCGATG
GCGGCGTGCGGGCCGGTCTTCCCCGCAATGTGGCTATGCAACTCGCCGCA
CAGACGGTCAAGGGCGCGGCCACCATGGTCCAGCTTACTGGAGAGCATCC
AGGAGTGCTTAAGGATCAAGTGGCCAGCCCGGGAGGTACCACCATCACGG
GgatcgaggccttggagaaagggggtTTGCGATCCACGGTTAtcggggcg
gtggtggccgcAGCGGAGCGATCCAAACAACTGGCAGAGTCGTCGAAGCC
GACGCCCAACCCGCGGCAAACATAAATGTCAGAAGCACCCACCCGTCAAG
CTCCCAGCAGTAGCACTGCCAGTAGTACGAATGCCAGCCCGCCGCATCCA
CAGCATGCCAAGCCAGGACCTCTACGTCCCGCCGGGGGGGCGAAGAGcgg
cgaaggggaaaagaaatttACCGTAGGGTTTATTGGCGGCGGAATGATGG
CGTCGGCATTGATTAGAGGACTTGTCAAGGCGGGAGTCGTTCCCAACTTC
GCCATCTCTGTGAGCGACCCCTACAAGCCCATGCGGGACAAGCTTGCTGC
GGAAGTCGGAGTAATCGCCTACGACGACAACATCCAAGTTATCGAGCACG
CGCAAGTGATCGTCCTCGCTGTGAAGCCGGACATCATTCCCCAAGTCCTG
CGAGAGCTTTCGCAGCGAGTgacccgccaccacctcatTATCTCCATTGC
TGCGGGGGCTACTCTGCAGCTTATGGAGCACCAACTCCCCGACCAGACTC
GGGTGGTGCGAGTGATGCCCAACACTCCCTGCCTGGTGGGGGAGTGCGCC
GCCGCATTCGCCTTGGGCGGCTCCTGCCTGCCGGAGGACGCTGTGCTCGT
AAAACGCATTTTTTCGGCCGTGGGTGCAGCCTTCGAAGTAAAAGAGAAGG
ATTTGAACGCTGTGACAGGACTGAGCGGGAGTGGGCCGGCCTACGTGTTC
ATGATGATCGAGGCCATGGCCGATGGCGGCGTGCGGGCCGGTCTTCCCCG
CAATGTGGCTATGCAACTCGCCGCACAGACGGTCAAGGGCGCGGCCACCA
TGGTCCAGCTTACTGGAGAGCATCCAGGAGTGCTTAAGGATCAAGTGGCC
AGCCCGGGAGGTACCACCATCACGGGgatcgaggccttggagaaaggggg
tTTGCGATCCACGGTTAtcggggcggtggtggccgcAGCGGAGCGATCCA
AACAACTGGCAGAGTCGTCGAAGCCGACGCCCAACCCGCGGCAAACATAA

Synonyms

Publications