EWM30618.1, cds55 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|585113293|gb|EWM30618.1| (protein of unknown function DUF1214, partial [Nannochloropsis gaditana]) HSP 1 Score: 315.464 bits (807), Expect = 6.898e-109 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query: 1 PPSLPSSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
PPSLPSSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT
Sbjct: 1 PPSLPSSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1120552925|ref|WP_073410772.1| (hypothetical protein [Flavobacterium johnsoniae] >gi|1110385681|emb|SHH55627.1| Uncharacterized conserved protein [Flavobacterium johnsoniae]) HSP 1 Score: 106.686 bits (265), Expect = 3.855e-24 Identity = 62/148 (41.89%), Postives = 84/148 (56.76%), Query Frame = 0
Query: 14 NYEQHAVCSVIG------ENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
NY A+ + G E V+T SA + KD +YILKF KN++P E FWS+T Y+LP R LV N + RYSI + LK+ ++G L I+LQ PG+ KE NWLPTP F++V+RIYGP N K ++G+
Sbjct: 321 NYMNRAIATAAGIYGNTKEEAVYTGSAVD-----KDNQPLAGNKNYILKFSKNQLP----EAKYFWSITMYNLPKRLLVRNPISRYSIGNKSKGLKYESNGDLIIYLQASSPGKDKESNWLPTPKNENFNFVIRIYGP--NEKVINGS 457
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|500937420|ref|WP_012026192.1| (hypothetical protein [Flavobacterium johnsoniae] >gi|146156372|gb|ABQ07226.1| protein of unknown function DUF1254 [Flavobacterium johnsoniae UW101] >gi|1110451956|emb|SHL26586.1| Uncharacterized conserved protein [Flavobacterium johnsoniae]) HSP 1 Score: 103.605 bits (257), Expect = 5.316e-23 Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0
Query: 26 ENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
E V+T SA + KD +YILKF KN++P E FWS+T Y+LP R LV N + RYSI + LK+ ++G L I+LQ PG+ KE NWLPTP F++V+RIYGP N K ++G+
Sbjct: 339 EEAVYTGSAVD-----KDNQPLAGNKNYILKFSKNQLP----EAKYFWSITMYNLPKRLLVRNPISRYSIGNKSKGLKYESNGDLIIYLQASSPGKDKESNWLPTPKNENFNFVIRIYGP--NEKVINGS 457
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|737681800|ref|WP_035650886.1| (hypothetical protein [Flavobacterium sp. Fl]) HSP 1 Score: 100.523 bits (249), Expect = 5.763e-22 Identity = 58/133 (43.61%), Postives = 75/133 (56.39%), Query Frame = 0
Query: 14 NYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDS-YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGP 145
NY AV + G G A T L G++ YILKF KN++P + FWS+T Y+LP R LVPN + RYSI + LK+ ++G L I+LQ+ PG+ KE NWLPTP F +V RIYGP
Sbjct: 321 NYLNRAVAAAAGIYGNTKEEAVYTGGSNDKNNQPLTGNNNYILKFSKNELP----KAKYFWSITMYNLPKRFLVPNPIKRYSIGNKTKGLKYESNGDLIIYLQSTSPGKDKESNWLPTPKNEKFMFVTRIYGP 449
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1089211816|emb|SEA96589.1| (Uncharacterized conserved protein [Paraburkholderia sartisoli]) HSP 1 Score: 100.523 bits (249), Expect = 5.910e-22 Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 0
Query: 53 YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPG 146
Y+L FDK +P FWS+T Y LP R LVPN + RYSI LK+N DGSL+I++Q PG GKE NWLP P GP++ ++RIYGPG
Sbjct: 352 YVLHFDKKDLP----PAKFFWSMTMYDLPARHLVPNPIKRYSIGDRTQGLKYNADGSLDIYVQHASPGAGKEANWLPAP-PGPYTMIMRIYGPG 440
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1124368226|ref|WP_074658085.1| (hypothetical protein [Flavobacterium aquidurense] >gi|1089181638|emb|SDY54441.1| Uncharacterized conserved protein [Flavobacterium aquidurense]) HSP 1 Score: 99.7525 bits (247), Expect = 1.015e-21 Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 0
Query: 14 NYEQHAVCSVIG------ENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNA 149
NY A+ + G E V+T S+ + KD + Y+L+F K+++P + FWS+T Y+LP R LVPN + RYSI + LK+ ++G L +LQ PG+ KE NWLPTP F +V+RIYGP +
Sbjct: 326 NYLNRAIAAAAGLYGNTKEEAVYTGSSTD-----KDNQPLTGSNKYVLRFSKDQLP----QAKYFWSITMYNLPKRFLVPNPISRYSIGNKSKGLKYESNGDLIFYLQAASPGKEKESNWLPTPKTERFMFVMRIYGPQADV 458
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1086041452|emb|SDU13399.1| (Uncharacterized conserved protein [Polaribacter sp. Hel1_33_78]) HSP 1 Score: 99.3673 bits (246), Expect = 1.835e-21 Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 0
Query: 14 NYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDS---YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNA 149
+Y V ++G+ G + PS +F D L S Y + F +++P + FWS T Y LP R LV N+++RYSI S +LK + DGS+ I+ QTD PG KEGNWLPTP GPF VLRIYGP N
Sbjct: 320 DYLNRTVGVIVGQFGNY-PSQAMYPSFKTDIKGELLDGSKKNYSITFSADELP----KSDYFWSFTMYDLPNRFLVENSINRYSIGSQTKSLKKDKDGSMTIYFQTDSPGANKEGNWLPTP-EGPFYTVLRIYGPDDNV 452
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|947776530|ref|WP_056438312.1| (hypothetical protein [Caulobacter sp. Root1455] >gi|945849218|gb|KQZ02878.1| hypothetical protein ASD21_21435 [Caulobacter sp. Root1455]) HSP 1 Score: 98.2117 bits (243), Expect = 3.742e-21 Identity = 53/133 (39.85%), Postives = 75/133 (56.39%), Query Frame = 0
Query: 14 NYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDS-YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGP 145
+Y + AV + +G G A A L G S Y ++ K+++P FWS T Y LP R L N+++RYS+ P LKF +DGSL I++Q DPPG +GNWLP+P +GPF+ + R+YGP
Sbjct: 328 DYLKRAVAAAMGIYGNAAEEAVYVGADQDSTGQPLDGASRYEIRLAKDQLPPAKY----FWSATLYELPSRLLSENSINRYSLGDRSPGLKFGDDGSLTIYVQHDPPGADNQGNWLPSPKSGPFNVIFRLYGP 456
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1026107907|emb|SAL71129.1| (putative lipoprotein [Caballeronia udeis]) HSP 1 Score: 96.6709 bits (239), Expect = 1.435e-20 Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0
Query: 53 YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
Y+L FDK +P FWS+T Y LPGR LV N +DRYSI +LK+ DGSL++++Q + PG+ KE NWLP P G ++ ++RIYGP NA+ + GT
Sbjct: 349 YVLHFDKKDLP----PAKFFWSMTLYDLPGRHLVANPIDRYSIGDRTKHLKYGADGSLDLYVQHESPGKEKETNWLPAP-TGAYTLIMRIYGP--NAEVLDGT 444
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1011171216|ref|WP_062092604.1| (hypothetical protein [Caballeronia udeis]) HSP 1 Score: 96.6709 bits (239), Expect = 1.523e-20 Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0
Query: 53 YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
Y+L FDK +P FWS+T Y LPGR LV N +DRYSI +LK+ DGSL++++Q + PG+ KE NWLP P G ++ ++RIYGP NA+ + GT
Sbjct: 361 YVLHFDKKDLP----PAKFFWSMTLYDLPGRHLVANPIDRYSIGDRTKHLKYGADGSLDLYVQHESPGKEKETNWLPAP-TGAYTLIMRIYGP--NAEVLDGT 456 The following BLAST results are available for this feature:
BLAST of EWM30618.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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