EWM30618.1, cds55 (CDS) Nannochloropsis gaditana

Overview
NameEWM30618.1
Unique Namecds55
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:161628..161828 -
Alignment locationCM002455.1:161364..161535 -
Alignment locationCM002455.1:161150..161244 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30618.1
Productprotein of unknown function DUF1214
Partialtrue
Orig transcript idgnl|cribi|Naga_102584g1.7599.mrna
GbkeyCDS
End range.
End range161828
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:161628..161828 -
CM002455.1supercontigCM002455.1:161364..161535 -
CM002455.1supercontigCM002455.1:161150..161244 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010621DUF1214
Homology
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|585113293|gb|EWM30618.1| (protein of unknown function DUF1214, partial [Nannochloropsis gaditana])

HSP 1 Score: 315.464 bits (807), Expect = 6.898e-109
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query:    1 PPSLPSSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
            PPSLPSSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT
Sbjct:    1 PPSLPSSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1120552925|ref|WP_073410772.1| (hypothetical protein [Flavobacterium johnsoniae] >gi|1110385681|emb|SHH55627.1| Uncharacterized conserved protein [Flavobacterium johnsoniae])

HSP 1 Score: 106.686 bits (265), Expect = 3.855e-24
Identity = 62/148 (41.89%), Postives = 84/148 (56.76%), Query Frame = 0
Query:   14 NYEQHAVCSVIG------ENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
            NY   A+ +  G      E  V+T SA +     KD        +YILKF KN++P    E   FWS+T Y+LP R LV N + RYSI +    LK+ ++G L I+LQ   PG+ KE NWLPTP    F++V+RIYGP  N K ++G+
Sbjct:  321 NYMNRAIATAAGIYGNTKEEAVYTGSAVD-----KDNQPLAGNKNYILKFSKNQLP----EAKYFWSITMYNLPKRLLVRNPISRYSIGNKSKGLKYESNGDLIIYLQASSPGKDKESNWLPTPKNENFNFVIRIYGP--NEKVINGS 457          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|500937420|ref|WP_012026192.1| (hypothetical protein [Flavobacterium johnsoniae] >gi|146156372|gb|ABQ07226.1| protein of unknown function DUF1254 [Flavobacterium johnsoniae UW101] >gi|1110451956|emb|SHL26586.1| Uncharacterized conserved protein [Flavobacterium johnsoniae])

HSP 1 Score: 103.605 bits (257), Expect = 5.316e-23
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0
Query:   26 ENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
            E  V+T SA +     KD        +YILKF KN++P    E   FWS+T Y+LP R LV N + RYSI +    LK+ ++G L I+LQ   PG+ KE NWLPTP    F++V+RIYGP  N K ++G+
Sbjct:  339 EEAVYTGSAVD-----KDNQPLAGNKNYILKFSKNQLP----EAKYFWSITMYNLPKRLLVRNPISRYSIGNKSKGLKYESNGDLIIYLQASSPGKDKESNWLPTPKNENFNFVIRIYGP--NEKVINGS 457          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|737681800|ref|WP_035650886.1| (hypothetical protein [Flavobacterium sp. Fl])

HSP 1 Score: 100.523 bits (249), Expect = 5.763e-22
Identity = 58/133 (43.61%), Postives = 75/133 (56.39%), Query Frame = 0
Query:   14 NYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDS-YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGP 145
            NY   AV +  G  G     A  T          L G++ YILKF KN++P    +   FWS+T Y+LP R LVPN + RYSI +    LK+ ++G L I+LQ+  PG+ KE NWLPTP    F +V RIYGP
Sbjct:  321 NYLNRAVAAAAGIYGNTKEEAVYTGGSNDKNNQPLTGNNNYILKFSKNELP----KAKYFWSITMYNLPKRFLVPNPIKRYSIGNKTKGLKYESNGDLIIYLQSTSPGKDKESNWLPTPKNEKFMFVTRIYGP 449          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1089211816|emb|SEA96589.1| (Uncharacterized conserved protein [Paraburkholderia sartisoli])

HSP 1 Score: 100.523 bits (249), Expect = 5.910e-22
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 0
Query:   53 YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPG 146
            Y+L FDK  +P        FWS+T Y LP R LVPN + RYSI      LK+N DGSL+I++Q   PG GKE NWLP P  GP++ ++RIYGPG
Sbjct:  352 YVLHFDKKDLP----PAKFFWSMTMYDLPARHLVPNPIKRYSIGDRTQGLKYNADGSLDIYVQHASPGAGKEANWLPAP-PGPYTMIMRIYGPG 440          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1124368226|ref|WP_074658085.1| (hypothetical protein [Flavobacterium aquidurense] >gi|1089181638|emb|SDY54441.1| Uncharacterized conserved protein [Flavobacterium aquidurense])

HSP 1 Score: 99.7525 bits (247), Expect = 1.015e-21
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 0
Query:   14 NYEQHAVCSVIG------ENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNA 149
            NY   A+ +  G      E  V+T S+ +     KD       + Y+L+F K+++P    +   FWS+T Y+LP R LVPN + RYSI +    LK+ ++G L  +LQ   PG+ KE NWLPTP    F +V+RIYGP  + 
Sbjct:  326 NYLNRAIAAAAGLYGNTKEEAVYTGSSTD-----KDNQPLTGSNKYVLRFSKDQLP----QAKYFWSITMYNLPKRFLVPNPISRYSIGNKSKGLKYESNGDLIFYLQAASPGKEKESNWLPTPKTERFMFVMRIYGPQADV 458          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1086041452|emb|SDU13399.1| (Uncharacterized conserved protein [Polaribacter sp. Hel1_33_78])

HSP 1 Score: 99.3673 bits (246), Expect = 1.835e-21
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 0
Query:   14 NYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDS---YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNA 149
            +Y    V  ++G+ G + PS     +F  D    L   S   Y + F  +++P    +   FWS T Y LP R LV N+++RYSI S   +LK + DGS+ I+ QTD PG  KEGNWLPTP  GPF  VLRIYGP  N 
Sbjct:  320 DYLNRTVGVIVGQFGNY-PSQAMYPSFKTDIKGELLDGSKKNYSITFSADELP----KSDYFWSFTMYDLPNRFLVENSINRYSIGSQTKSLKKDKDGSMTIYFQTDSPGANKEGNWLPTP-EGPFYTVLRIYGPDDNV 452          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|947776530|ref|WP_056438312.1| (hypothetical protein [Caulobacter sp. Root1455] >gi|945849218|gb|KQZ02878.1| hypothetical protein ASD21_21435 [Caulobacter sp. Root1455])

HSP 1 Score: 98.2117 bits (243), Expect = 3.742e-21
Identity = 53/133 (39.85%), Postives = 75/133 (56.39%), Query Frame = 0
Query:   14 NYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDS-YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGP 145
            +Y + AV + +G  G     A    A        L G S Y ++  K+++P        FWS T Y LP R L  N+++RYS+    P LKF +DGSL I++Q DPPG   +GNWLP+P +GPF+ + R+YGP
Sbjct:  328 DYLKRAVAAAMGIYGNAAEEAVYVGADQDSTGQPLDGASRYEIRLAKDQLPPAKY----FWSATLYELPSRLLSENSINRYSLGDRSPGLKFGDDGSLTIYVQHDPPGADNQGNWLPSPKSGPFNVIFRLYGP 456          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1026107907|emb|SAL71129.1| (putative lipoprotein [Caballeronia udeis])

HSP 1 Score: 96.6709 bits (239), Expect = 1.435e-20
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   53 YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
            Y+L FDK  +P        FWS+T Y LPGR LV N +DRYSI     +LK+  DGSL++++Q + PG+ KE NWLP P  G ++ ++RIYGP  NA+ + GT
Sbjct:  349 YVLHFDKKDLP----PAKFFWSMTLYDLPGRHLVANPIDRYSIGDRTKHLKYGADGSLDLYVQHESPGKEKETNWLPAP-TGAYTLIMRIYGP--NAEVLDGT 444          
BLAST of EWM30618.1 vs. NCBI_GenBank
Match: gi|1011171216|ref|WP_062092604.1| (hypothetical protein [Caballeronia udeis])

HSP 1 Score: 96.6709 bits (239), Expect = 1.523e-20
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   53 YILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAKPVSGT 155
            Y+L FDK  +P        FWS+T Y LPGR LV N +DRYSI     +LK+  DGSL++++Q + PG+ KE NWLP P  G ++ ++RIYGP  NA+ + GT
Sbjct:  361 YVLHFDKKDLP----PAKFFWSMTLYDLPGRHLVANPIDRYSIGDRTKHLKYGADGSLDLYVQHESPGKEKETNWLPAP-TGAYTLIMRIYGP--NAEVLDGT 456          
The following BLAST results are available for this feature:
BLAST of EWM30618.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113293|gb|EWM30618.1|6.898e-109100.00protein of unknown function DUF1214, partial [Nann... [more]
gi|1120552925|ref|WP_073410772.1|3.855e-2441.89hypothetical protein [Flavobacterium johnsoniae] >... [more]
gi|500937420|ref|WP_012026192.1|5.316e-2344.62hypothetical protein [Flavobacterium johnsoniae] >... [more]
gi|737681800|ref|WP_035650886.1|5.763e-2243.61hypothetical protein [Flavobacterium sp. Fl][more]
gi|1089211816|emb|SEA96589.1|5.910e-2252.13Uncharacterized conserved protein [Paraburkholderi... [more]
gi|1124368226|ref|WP_074658085.1|1.015e-2138.03hypothetical protein [Flavobacterium aquidurense] ... [more]
gi|1086041452|emb|SDU13399.1|1.835e-2143.17Uncharacterized conserved protein [Polaribacter sp... [more]
gi|947776530|ref|WP_056438312.1|3.742e-2139.85hypothetical protein [Caulobacter sp. Root1455] >g... [more]
gi|1026107907|emb|SAL71129.1|1.435e-2047.57putative lipoprotein [Caballeronia udeis][more]
gi|1011171216|ref|WP_062092604.1|1.523e-2047.57hypothetical protein [Caballeronia udeis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna55rna55Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications