rna55, rna55 (mRNA) Nannochloropsis gaditana

Overview
Namerna55
Unique Namerna55
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length258
Alignment locationCM002455.1:161061..161828 -

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Properties
Property NameValue
Productprotein of unknown function DUF1214
Orig transcript idgnl|cribi|Naga_102584g1.7599.mrna
Orig protein idgnl|cribi|Naga_102584g1.7599
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:161061..161828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102584g1gene54Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna55rna55-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30618.1cds55Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna55 ID=rna55|Name=rna55|organism=Nannochloropsis gaditana|type=mRNA|length=258bp
ATGGAAGACGCCCCTGCAACCCGACGCCATCTCCCCCATTGCCATTCGAG
CGGCCTCGGGCGGGCCCGCGCCGATGAAAAACACCGACGCCCTGCCTGTC
CCACCTTCCAAACGTGCCCTGCGGGTGTGAGGGATGGGGGGAGGGTGGTA
GCGAGGGCGACGGTCGTGATTGAAGGCCCAAGAGGAGGAGGCATAAAATG
CCATGCGGTGGAAAGGGCGGAGCAGGGAAAGGGTCGAGGAAGAGCGGATG
CTGTCTAG
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protein sequence of rna55

>rna55-protein ID=rna55-protein|Name=rna55|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
PPSLPSSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPG
DSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDP
NLKFNNDGSLEIFLQTDPPGQGKEGNWLPTPAAGPFSYVLRIYGPGGNAK
PVSGT
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mRNA from alignment at CM002455.1:161061..161828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna55 ID=rna55|Name=rna55|organism=Nannochloropsis gaditana|type=mRNA|length=768bp|location=Sequence derived from alignment at CM002455.1:161061..161828- (Nannochloropsis gaditana)
CCTCCCTCCCTTCCCTCCTCAGGCTACTTCGACGTGCTCAACTACGAACA
GCACGCCGTCTGCTCCGTGATTGGCGAGAACGGCGTCTTCACGCCCTCCG
CTTGGGAGACGGAGGCCTTCGCCAAAGACTTCCCCGACGCCCTACCCGGC
GACTCGTACATCCTAAAATTCGACAAAAACAAGATCCCAGGGGTCAACCA
GGTAGACCACACGCTCGTCCTTCACTCTACCCTCTGTTTCTCACTCCCCT
CACTCATTTCTCCCTCCCTCCCTCCCTCCCTCCCCCTCCTCAGGAGGGTG
CGGGCTTCTGGTCGGTGACGGCCTACTCCCTCCCGGGGCGGACCTTGGTG
CCGAACGCCCTTGACCGTTACTCGATCCAAAGCACCGATCCCAACTTGAA
GTTCAACAACGACGGATCTTTGGAAATCTTTCTGCAGACGGATCCCCCCG
GGCAAGGAAAGGAAGGTGGGTGAGGGTGCGCGTTTTGGCGGCGATGGTCG
ACATGCGACTGATAACTCACGCCGTGTCATCCTCCCTCCTTTTCCCTTTT
CCCCCCTCGTTCTGTCCCTTGTGGTCGTCGTCAGGCAACTGGCTGCCGAC
ACCAGCCGCCGGCCCATTCAGCTATGTCCTTCGGATTTACGGTCCCGGTG
GGAACGCCAAACCTGTCAGCGGTACGTGACCTCCCTCCCTTTTTTCCTGT
CCTCCCTCTTTTTTCTCCCTCCGTCCACGGCAATTTCCCTCGTTTCTGCC
TCTCTCACCTTTCCAATC
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Coding sequence (CDS) from alignment at CM002455.1:161061..161828-

>rna55 ID=rna55|Name=rna55|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002455.1:161061..161828- (Nannochloropsis gaditana)
GCAACTGGCTGCCGACACCAGCCGCCGGCCCATTCAGCTATGTCCTTCGG
ATTTACGGTCCCGGTGGGAACGCCAAACCTGTCAGCGGTACGTGAGAGGG
TGCGGGCTTCTGGTCGGTGACGGCCTACTCCCTCCCGGGGCGGACCTTGG
TGCCGAACGCCCTTGACCGTTACTCGATCCAAAGCACCGATCCCAACTTG
AAGTTCAACAACGACGGATCTTTGGAAATCTTTCTGCAGACGGATCCCCC
CGGGCAAGGAAAGGAAGCCTCCCTCCCTTCCCTCCTCAGGCTACTTCGAC
GTGCTCAACTACGAACAGCACGCCGTCTGCTCCGTGATTGGCGAGAACGG
CGTCTTCACGCCCTCCGCTTGGGAGACGGAGGCCTTCGCCAAAGACTTCC
CCGACGCCCTACCCGGCGACTCGTACATCCTAAAATTCGACAAAAACAAG
ATCCCAGGGGTCAACCAGGCAACTGGCTGCCGACACCAGCCGCCGGCCCA
TTCAGCTATGTCCTTCGGATTTACGGTCCCGGTGGGAACGCCAAACCTGT
CAGCGGTACGTGAGAGGGTGCGGGCTTCTGGTCGGTGACGGCCTACTCCC
TCCCGGGGCGGACCTTGGTGCCGAACGCCCTTGACCGTTACTCGATCCAA
AGCACCGATCCCAACTTGAAGTTCAACAACGACGGATCTTTGGAAATCTT
TCTGCAGACGGATCCCCCCGGGCAAGGAAAGGAAGCCTCCCTCCCTTCCC
TCCTCAGGCTACTTCGACGTGCTCAACTACGAACAGCACGCCGTCTGCTC
CGTGATTGGCGAGAACGGCGTCTTCACGCCCTCCGCTTGGGAGACGGAGG
CCTTCGCCAAAGACTTCCCCGACGCCCTACCCGGCGACTCGTACATCCTA
AAATTCGACAAAAACAAGATCCCAGGGGTCAACCAGGCAACTGGCTGCCG
ACACCAGCCGCCGGCCCATTCAGCTATGTCCTTCGGATTTACGGTCCCGG
TGGGAACGCCAAACCTGTCAGCGGTACGTGAGAGGGTGCGGGCTTCTGGT
CGGTGACGGCCTACTCCCTCCCGGGGCGGACCTTGGTGCCGAACGCCCTT
GACCGTTACTCGATCCAAAGCACCGATCCCAACTTGAAGTTCAACAACGA
CGGATCTTTGGAAATCTTTCTGCAGACGGATCCCCCCGGGCAAGGAAAGG
AAGCCTCCCTCCCTTCCCTCCTCAGGCTACTTCGACGTGCTCAACTACGA
ACAGCACGCCGTCTGCTCCGTGATTGGCGAGAACGGCGTCTTCACGCCCT
CCGCTTGGGAGACGGAGGCCTTCGCCAAAGACTTCCCCGACGCCCTACCC
GGCGACTCGTACATCCTAAAATTCGACAAAAACAAGATCCCAGGGGTCAA
CCAG
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Synonyms
Publications