EWM30629.1, cds44 (CDS) Nannochloropsis gaditana

Overview
NameEWM30629.1
Unique Namecds44
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:127677..129668 +

Link to JBrowse

Properties
Property NameValue
Start range127677
Start range.
Protein idEWM30629.1
ProductKinesin, motor domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100626g1.7737.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:127677..129668 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0008569ATP-dependent microtubule motor activity, minus-end-directed
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007018microtubule-based movement
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005871kinesin complex
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR027640Kinesin-like_fam
IPR027325KIFC3
IPR001752Kinesin_motor_dom
Homology
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|585113308|gb|EWM30629.1| (Kinesin, motor domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 1348.18 bits (3488), Expect = 0.000e+0
Identity = 663/663 (100.00%), Postives = 663/663 (100.00%), Query Frame = 0
Query:    1 ERRGPGQQHIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHETREAQAAAEREQGHMGLAVAHMQEAHGDQATQWAEEKEKYERALEDAHRQWQAARHAAHRLKEEHHLELEQQRMHVEELMIEKGKLQAQLAAATSAPPSLARTNLTNTTPRRVPVGKEKRDTIREAIHPGAGIPAAAAPATAVAAAAVRDQRVLREKTGPGGETSNCRMGQERGEKSEREDLTKVVPSVKMGGDSAHVKSVDGSSSDGSSNHSTGVRNDSHSHETTANTDGDNLKKRGGTVSDRDLAAPCTEADASDSTSLKRSRAVAEPEGSPGPTPTQNLSSPSAILSSPTPFRPWESNSERNIEAVPEALPTKRQKKVTFMIPSPGPRLPTEGDILEGDPDFGPAREGEREENGPDGAEGGVEASFQHPHYRTTPFKKQEGPELLAPATLGHQVGHGHPATSTSKSVPAPATKNPRPLMMHSNASFGSNHNAPNGVAGGSGYAPLGMPARVMHPSGPTSTSSGPTSALSSAPMRKAAARVPSVPSYKTLGGGSSGTAAVGCSVERTKERVLWSSGNGVNTAPGAGSTRFNENAGKGHSDDKGSGGGRWR 663
            ERRGPGQQHIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHETREAQAAAEREQGHMGLAVAHMQEAHGDQATQWAEEKEKYERALEDAHRQWQAARHAAHRLKEEHHLELEQQRMHVEELMIEKGKLQAQLAAATSAPPSLARTNLTNTTPRRVPVGKEKRDTIREAIHPGAGIPAAAAPATAVAAAAVRDQRVLREKTGPGGETSNCRMGQERGEKSEREDLTKVVPSVKMGGDSAHVKSVDGSSSDGSSNHSTGVRNDSHSHETTANTDGDNLKKRGGTVSDRDLAAPCTEADASDSTSLKRSRAVAEPEGSPGPTPTQNLSSPSAILSSPTPFRPWESNSERNIEAVPEALPTKRQKKVTFMIPSPGPRLPTEGDILEGDPDFGPAREGEREENGPDGAEGGVEASFQHPHYRTTPFKKQEGPELLAPATLGHQVGHGHPATSTSKSVPAPATKNPRPLMMHSNASFGSNHNAPNGVAGGSGYAPLGMPARVMHPSGPTSTSSGPTSALSSAPMRKAAARVPSVPSYKTLGGGSSGTAAVGCSVERTKERVLWSSGNGVNTAPGAGSTRFNENAGKGHSDDKGSGGGRWR
Sbjct:    1 ERRGPGQQHIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHETREAQAAAEREQGHMGLAVAHMQEAHGDQATQWAEEKEKYERALEDAHRQWQAARHAAHRLKEEHHLELEQQRMHVEELMIEKGKLQAQLAAATSAPPSLARTNLTNTTPRRVPVGKEKRDTIREAIHPGAGIPAAAAPATAVAAAAVRDQRVLREKTGPGGETSNCRMGQERGEKSEREDLTKVVPSVKMGGDSAHVKSVDGSSSDGSSNHSTGVRNDSHSHETTANTDGDNLKKRGGTVSDRDLAAPCTEADASDSTSLKRSRAVAEPEGSPGPTPTQNLSSPSAILSSPTPFRPWESNSERNIEAVPEALPTKRQKKVTFMIPSPGPRLPTEGDILEGDPDFGPAREGEREENGPDGAEGGVEASFQHPHYRTTPFKKQEGPELLAPATLGHQVGHGHPATSTSKSVPAPATKNPRPLMMHSNASFGSNHNAPNGVAGGSGYAPLGMPARVMHPSGPTSTSSGPTSALSSAPMRKAAARVPSVPSYKTLGGGSSGTAAVGCSVERTKERVLWSSGNGVNTAPGAGSTRFNENAGKGHSDDKGSGGGRWR 663          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|923886858|ref|XP_013714775.1| (PREDICTED: osmotic avoidance abnormal protein 3-like [Brassica napus])

HSP 1 Score: 101.293 bits (251), Expect = 3.218e-19
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHET-------------REAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +A  Q  + +GD+
Sbjct:   64 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTKIAEYQTKQQNGDE 212          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|922430068|ref|XP_013621094.1| (PREDICTED: osmotic avoidance abnormal protein 3-like [Brassica oleracea var. oleracea])

HSP 1 Score: 101.293 bits (251), Expect = 3.690e-19
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHET-------------REAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +A  Q  + +GD+
Sbjct:   64 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTKIAEYQTKQQNGDE 212          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|923886856|ref|XP_013714774.1| (PREDICTED: osmotic avoidance abnormal protein 3-like [Brassica napus])

HSP 1 Score: 101.293 bits (251), Expect = 3.828e-19
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHET-------------REAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +A  Q  + +GD+
Sbjct:   64 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTKIAEYQTKQQNGDE 212          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|685273752|ref|XP_009127917.1| (PREDICTED: kinesin-like protein KIF11 isoform X3 [Brassica rapa])

HSP 1 Score: 100.908 bits (250), Expect = 2.451e-18
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHE-------------TREAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +   Q  + HGD+
Sbjct:  783 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTMITEYQTKQQHGDE 931          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|674929602|emb|CDY03649.1| (BnaA02g15880D [Brassica napus])

HSP 1 Score: 100.908 bits (250), Expect = 2.500e-18
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHE-------------TREAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +   Q  + HGD+
Sbjct:  788 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTKITEYQTKQQHGDE 936          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|685273756|ref|XP_009127919.1| (PREDICTED: kinesin-like protein KIF11 isoform X5 [Brassica rapa])

HSP 1 Score: 100.908 bits (250), Expect = 2.512e-18
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHE-------------TREAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +   Q  + HGD+
Sbjct:  728 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTMITEYQTKQQHGDE 876          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|727596539|ref|XP_010471246.1| (PREDICTED: uncharacterized protein LOC104751068 [Camelina sativa])

HSP 1 Score: 100.908 bits (250), Expect = 2.633e-18
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHE-------------TREAQAAAEREQGHMGLAVAHMQEAHGDQATQWAEEKEK 150
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E D SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E+Q   ER+     LA  H+     +Q T+   E EK
Sbjct:  789 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDQSETLCSLNFASRVRGIELGTAKKQLDNTELLKYKQMVEKWKQDMKGKDEQIRKMEETMYGLEAKIKERDTKNKTLQDKVKELESQLLVERK-----LARQHVDTKIAEQQTKQQTEDEK 938          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|685273748|ref|XP_009127915.1| (PREDICTED: kinesin-like protein KCA1 isoform X1 [Brassica rapa])

HSP 1 Score: 100.908 bits (250), Expect = 2.740e-18
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHE-------------TREAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +   Q  + HGD+
Sbjct:  799 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTMITEYQTKQQHGDE 947          
BLAST of EWM30629.1 vs. NCBI_GenBank
Match: gi|685273750|ref|XP_009127916.1| (PREDICTED: kinesin-like protein KCA1 isoform X2 [Brassica rapa])

HSP 1 Score: 100.908 bits (250), Expect = 2.785e-18
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    9 HIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCSLTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAEEMAKLQAELHE-------------TREAQAAAERE--QGHMGLAVAHMQ--EAHGDQ 140
            HIPFRNSKLT+LLQD+LG ++K LM V +SP+E+D+SE+LCSL FA RV G+ LG AK      +   +K+ V K K++ K  +     + E M  L+A++ E               E Q   ER+  + H+   +   Q  + HGD+
Sbjct:  797 HIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEKDNSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKVKDEQMRKMEETMFGLEAKVKERDIKNKTLQEKVKELELQLLVERKLARQHVDTMITEYQTKQQHGDE 945          
The following BLAST results are available for this feature:
BLAST of EWM30629.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113308|gb|EWM30629.1|0.000e+0100.00Kinesin, motor domain protein, partial [Nannochlor... [more]
gi|923886858|ref|XP_013714775.1|3.218e-1938.93PREDICTED: osmotic avoidance abnormal protein 3-li... [more]
gi|922430068|ref|XP_013621094.1|3.690e-1938.93PREDICTED: osmotic avoidance abnormal protein 3-li... [more]
gi|923886856|ref|XP_013714774.1|3.828e-1938.93PREDICTED: osmotic avoidance abnormal protein 3-li... [more]
gi|685273752|ref|XP_009127917.1|2.451e-1838.93PREDICTED: kinesin-like protein KIF11 isoform X3 [... [more]
gi|674929602|emb|CDY03649.1|2.500e-1838.93BnaA02g15880D [Brassica napus][more]
gi|685273756|ref|XP_009127919.1|2.512e-1838.93PREDICTED: kinesin-like protein KIF11 isoform X5 [... [more]
gi|727596539|ref|XP_010471246.1|2.633e-1839.35PREDICTED: uncharacterized protein LOC104751068 [C... [more]
gi|685273748|ref|XP_009127915.1|2.740e-1838.93PREDICTED: kinesin-like protein KCA1 isoform X1 [B... [more]
gi|685273750|ref|XP_009127916.1|2.785e-1838.93PREDICTED: kinesin-like protein KCA1 isoform X2 [B... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna44rna44Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications