rna44, rna44 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna44
Unique Name	rna44
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	793
Alignment location	CM002455.1:127677..129785 +

Link to JBrowse

Properties


Property Name	Value
Product	Kinesin, motor domain protein
Orig transcript id	gnl\|cribi\|Naga_100626g1.7737.mrna
Orig protein id	gnl\|cribi\|Naga_100626g1.7737
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:127677..129785 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100626g1	gene42	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna44	rna44-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30629.1	cds44	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:127677..129785+
coding sequence from alignment at CM002455.1:127677..129785+

mRNA sequence

>rna44 ID=rna44|Name=rna44|organism=Nannochloropsis gaditana|type=mRNA|length=793bp
CATCGAATGTGTGGTCTTTGGAGTATGGCTCGACATGTCCATGCATGCAT
CCTCAAAGTATGACACGACACGACACCCCAACATAGACTTTAGCTGTACA
TACAGGCGTGATCAGTCACAATTTACATAAAATATATACATTCGTTTTAT
CGCAGGAGACGCTTGGGTGTACGCAGGGAAGGAGAAGGAAGAAAGCAGGT
TTTACAGCATAATTTAAGCTGTCGATGCCCCTCCAACCGCTTTCCTCCCT
CGCCCGCCCGGCGCAGGAAACAGGCGACTCTCAATCTTTCCTACCTACAT
CACCTTCCTCCCTCTCCTCGTCTCCGTCGCCCTTCCGCAAACGGCGCACA
GGGTTTGGCAGGTTCGAAATTTCTAAACACCTGCACGCCTACAGGCACGG
AAAATTAAGCAAGGAGGAGCTGTGCAGCTACCTGAAAATCCATCGGCACG
ACCTGCTGGTGGAGGACGCGGGGGAGGGCAATATCGTGCATGGGCTGATA
AGAAAGGGCCACACGCGCGCCCTACTCCAAGTTGTGCTTCCGAACATTCC
CGAGGTCGTGCTGGCTCTGGAGCGATCGCGCGCGGGGGACGGACAGAGTG
GCGTCACCCTACTGCGTCGTGCTGTGGAGAGGAAGGATCGGGCGGTAGTG
GAAGGCATCGTCAAGGTCGGGAGGGAGGGAGAGAACGAGGGAGGGAGGGA
GGGTGGGAGGGTAGAGACAAACTCAGGCAGACGAGTCTGCCGCCAAGCGA
GGCTGAGAGGGGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGA

protein sequence of rna44

>rna44-protein ID=rna44-protein|Name=rna44|organism=Nannochloropsis gaditana|type=polypeptide|length=663bp
ERRGPGQQHIPFRNSKLTYLLQDALGAENKCLMVVCVSPDEEDSSESLCS
LTFAQRVHGVILGAAKAHGGKLDTRAHKEAVLKAKEETKAAEAARALLAE
EMAKLQAELHETREAQAAAEREQGHMGLAVAHMQEAHGDQATQWAEEKEK
YERALEDAHRQWQAARHAAHRLKEEHHLELEQQRMHVEELMIEKGKLQAQ
LAAATSAPPSLARTNLTNTTPRRVPVGKEKRDTIREAIHPGAGIPAAAAP
ATAVAAAAVRDQRVLREKTGPGGETSNCRMGQERGEKSEREDLTKVVPSV
KMGGDSAHVKSVDGSSSDGSSNHSTGVRNDSHSHETTANTDGDNLKKRGG
TVSDRDLAAPCTEADASDSTSLKRSRAVAEPEGSPGPTPTQNLSSPSAIL
SSPTPFRPWESNSERNIEAVPEALPTKRQKKVTFMIPSPGPRLPTEGDIL
EGDPDFGPAREGEREENGPDGAEGGVEASFQHPHYRTTPFKKQEGPELLA
PATLGHQVGHGHPATSTSKSVPAPATKNPRPLMMHSNASFGSNHNAPNGV
AGGSGYAPLGMPARVMHPSGPTSTSSGPTSALSSAPMRKAAARVPSVPSY
KTLGGGSSGTAAVGCSVERTKERVLWSSGNGVNTAPGAGSTRFNENAGKG
HSDDKGSGGGRWR

mRNA from alignment at CM002455.1:127677..129785+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna44 ID=rna44|Name=rna44|organism=Nannochloropsis gaditana|type=mRNA|length=2109bp|location=Sequence derived from alignment at CM002455.1:127677..129785+ (Nannochloropsis gaditana)
GAGCGACGGGGCCCCGGACAACAGCACATCCCCTTCCGTAACTCCAAGCT
CACGTACCTGTTGCAAGACGCCCTGGGGGCGGAGAACAAGTGTTTGATGG
TCGTGTGTGTCTCCCctgatgaggaggacagcaGTGAATCCCTCTGTTCC
CTCACCTTTGCGCAGCGTGTCCATGGCGTCATCCTGGGCGCCGCCAAGGC
GCACGGCGGGAAGCTCGACACCCGCGCCCACAAGGAAGCTGTCCTgaaag
cgaaggaagaaACCAAGGCAGCAGAAGCTGCGAGAGCTCTCCTAgcagag
gagatggcgaAATTGCAGGCAGAGCTGCACGAGACCCGGGAGGcccaggc
ggcggccgagcgAGAACAAGGACATATGggcctggccgtggcccatATGC
AAGAGGCACACGGAGACCAAGCCACGCaatgggcggaggagaaggaaaaa
tacGAACGGGCGTTGGAGGACGCGCATCGACAATGGCAGGCGGCCCGGCA
TGCGGCCCATCGCCTGAAAGAGGAGCATCATTTGGAACTGGAGCAGCAGA
GAAtgcacgtggaggagctgatgaTCGAGAAGGGGAAACTCCAAGCCCAG
CTAGCGGCAGCAACCTcggccccaccctcccttgcccggACAAATTTGAC
CAACACGACCCCGCGCCGTGTCCCCGTCGGGAAAGAGAAACGAGACACGA
TCCGAGAAGCGATCCATCCAGGAGCAGGTataccagcagcagcagccccg
gCCACAGCGgtagctgctgctgctgtacGGGACCAAAGGGTTCTCAGAGA
GAAAACGGGGCCAGGGGGTGAGACAAGTAACTGCCGCATGGggcaggagc
gaggggagaagagcgagCGCGAAGATTTGACGAAAGTCGTGCCTAGCGTG
AAAATGGGAGGGGATAGCGCTCACGTCAAGAGTGtggacggcagcagcag
cgatgGCAGCAGCAATCACAGCACTGGCGTCAGGAATGACAGCCACAGCC
ACGAAACTACCGCCAACACGGACGGCGACAACCTCAAGAAGCGCGGCGGC
ACTGTATCTGACAGAGACCTCGCCGCTCCCTGCACGGAGGCTGATGCCAG
CGACTCGACCTCGTTGAAGAGATcaagggcggtggcggagccTGAAGGTA
GCCCCGGGCCCACTCCTACGCAAAACTTGTCCTCCCCATCCGCAATCTTG
TCTTCCCCGacccccttccgtccttgGGAATCCAATTCTGAGCGAAATAT
TGAGGCTGTGCCTGAGGCCTTGCCCACGAAACGCCAGAAGAAAGTCACTT
TTATGATTCCATCCCCGGGCCCCCGCTTGCCCACAGAGGGGGACATCCTG
GAAGGCGACCCGGACTTTGGACCTGCCagggagggcgaaagggaggagaa
tggCCCAGACGGAGCCGAAGGCGGCGTCGAGGCCTCTTTCCAGCATCCGC
ACTACCGCACCACCCCTTTCAAAAAGCAGGAGGGGCCAGAGTTGCTGGCT
CCCGCCACACTGGGACACCAAGTGGGCCACGGCCATCCGGCGACGAGCAC
GTCCAAATCGGTCCCGGCCCCGGCGACCAAGAACCCCCGGCCGTTGATGA
TGCACAGCAATGCTAGCTTCGGCAGCAACCACAATGCTCCCAACGGAGTG
GCCGGTGGGAGTGGCTATGCGCCCCTCGGCATGCCGGCTCGGGTCATGCA
TCCCTCAGGGCCCACGTCGACTTCTTCAGGACCGACGAGCGCActctcct
ccgcgcctaTGCGGAAGGCAGCGGCGCGAGTCCCCTCTGTTCCCTCGTAC
AAGACCCTGGGGGGTGGAAGCAGTGGCACGGCCGCCGTGGGATGCAGTGt
ggagaggacgaaggagcgAGTACTCTGGAGCAGCGGCAACGGCGTCAATA
CAGCGCCTGGCGCTGGCTCTACACGATTTAACGAGAACGCGGGCAAGGGG
CATTCGGACGACAAGgggagtggtggagggcgatggcGGTAGGAAAGACC
CTGATGTTTCCTTATTCACGCGAATTTGTCGCGGGCAAAAGTAATTGATG
CACAACTGAAAGAAATAAACGAATCACCGCTTTGCAGGGGAAGTGAGTAC
TCCTTATGC

Coding sequence (CDS) from alignment at CM002455.1:127677..129785+

>rna44 ID=rna44|Name=rna44|organism=Nannochloropsis gaditana|type=CDS|length=1992bp|location=Sequence derived from alignment at CM002455.1:127677..129785+ (Nannochloropsis gaditana)
GAGCGACGGGGCCCCGGACAACAGCACATCCCCTTCCGTAACTCCAAGCT
CACGTACCTGTTGCAAGACGCCCTGGGGGCGGAGAACAAGTGTTTGATGG
TCGTGTGTGTCTCCCctgatgaggaggacagcaGTGAATCCCTCTGTTCC
CTCACCTTTGCGCAGCGTGTCCATGGCGTCATCCTGGGCGCCGCCAAGGC
GCACGGCGGGAAGCTCGACACCCGCGCCCACAAGGAAGCTGTCCTgaaag
cgaaggaagaaACCAAGGCAGCAGAAGCTGCGAGAGCTCTCCTAgcagag
gagatggcgaAATTGCAGGCAGAGCTGCACGAGACCCGGGAGGcccaggc
ggcggccgagcgAGAACAAGGACATATGggcctggccgtggcccatATGC
AAGAGGCACACGGAGACCAAGCCACGCaatgggcggaggagaaggaaaaa
tacGAACGGGCGTTGGAGGACGCGCATCGACAATGGCAGGCGGCCCGGCA
TGCGGCCCATCGCCTGAAAGAGGAGCATCATTTGGAACTGGAGCAGCAGA
GAAtgcacgtggaggagctgatgaTCGAGAAGGGGAAACTCCAAGCCCAG
CTAGCGGCAGCAACCTcggccccaccctcccttgcccggACAAATTTGAC
CAACACGACCCCGCGCCGTGTCCCCGTCGGGAAAGAGAAACGAGACACGA
TCCGAGAAGCGATCCATCCAGGAGCAGGTataccagcagcagcagccccg
gCCACAGCGgtagctgctgctgctgtacGGGACCAAAGGGTTCTCAGAGA
GAAAACGGGGCCAGGGGGTGAGACAAGTAACTGCCGCATGGggcaggagc
gaggggagaagagcgagCGCGAAGATTTGACGAAAGTCGTGCCTAGCGTG
AAAATGGGAGGGGATAGCGCTCACGTCAAGAGTGtggacggcagcagcag
cgatgGCAGCAGCAATCACAGCACTGGCGTCAGGAATGACAGCCACAGCC
ACGAAACTACCGCCAACACGGACGGCGACAACCTCAAGAAGCGCGGCGGC
ACTGTATCTGACAGAGACCTCGCCGCTCCCTGCACGGAGGCTGATGCCAG
CGACTCGACCTCGTTGAAGAGATcaagggcggtggcggagccTGAAGGTA
GCCCCGGGCCCACTCCTACGCAAAACTTGTCCTCCCCATCCGCAATCTTG
TCTTCCCCGacccccttccgtccttgGGAATCCAATTCTGAGCGAAATAT
TGAGGCTGTGCCTGAGGCCTTGCCCACGAAACGCCAGAAGAAAGTCACTT
TTATGATTCCATCCCCGGGCCCCCGCTTGCCCACAGAGGGGGACATCCTG
GAAGGCGACCCGGACTTTGGACCTGCCagggagggcgaaagggaggagaa
tggCCCAGACGGAGCCGAAGGCGGCGTCGAGGCCTCTTTCCAGCATCCGC
ACTACCGCACCACCCCTTTCAAAAAGCAGGAGGGGCCAGAGTTGCTGGCT
CCCGCCACACTGGGACACCAAGTGGGCCACGGCCATCCGGCGACGAGCAC
GTCCAAATCGGTCCCGGCCCCGGCGACCAAGAACCCCCGGCCGTTGATGA
TGCACAGCAATGCTAGCTTCGGCAGCAACCACAATGCTCCCAACGGAGTG
GCCGGTGGGAGTGGCTATGCGCCCCTCGGCATGCCGGCTCGGGTCATGCA
TCCCTCAGGGCCCACGTCGACTTCTTCAGGACCGACGAGCGCActctcct
ccgcgcctaTGCGGAAGGCAGCGGCGCGAGTCCCCTCTGTTCCCTCGTAC
AAGACCCTGGGGGGTGGAAGCAGTGGCACGGCCGCCGTGGGATGCAGTGt
ggagaggacgaaggagcgAGTACTCTGGAGCAGCGGCAACGGCGTCAATA
CAGCGCCTGGCGCTGGCTCTACACGATTTAACGAGAACGCGGGCAAGGGG
CATTCGGACGACAAGgggagtggtggagggcgatggcGGTAG

Synonyms

Publications