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Properties
| Property Name | Value |
|---|
| Product | 3-hydroxyacyl-dehydratase pasticcino 2a-like protein |
| Orig transcript id | gnl|cribi|Naga_100091g10.5707.mrna |
| Orig protein id | gnl|cribi|Naga_100091g10.5707 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:17762..19522 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6 ID=rna6|Name=rna6|organism=Nannochloropsis gaditana|type=mRNA|length=1775bp
AAAATGCTATCCTTATATAAGTCAGCACCTGGCGCGATAACATGAATGAT
TAAAATACTATTGCCACATTTCCTGGAGATCCTATGATCCTCTGGAGTCG
TGAGGTCTCGACCTTGTCTATTCAGAACATAATGCTTAGGTCCGACGTCT
CCAGAACAGCAAAGGAAAGTATCTTTATAAGGCTAATTGCAGTATACTCA
CCAGTTACATCAACCATTCACTACTGATGTCGCGCCACGATTTGTTGGAT
TGGTTCTTTATCAATACTTAGTGTCCATTCACATGTGGCTTCTGGAGAAC
ACGAAATTGGGAAGATGAGTTGTGCGCCGCTTACCTCCTCTTTCTCCGAG
CTCCGTCCTACCTGGAGGGAAACACAATTGAGGAAGCATACCTGCTCGTG
TGATTTGTTTCCACACAACAATCATGTAGTATCTAGAAAGCTGAAGATCA
GGCCTCGCACCACACTCACCTTCTTCTACACTTCGTTCTCGTTTCTCACA
GCAGTGCCTGATATCCTTCTCTATATCACCATTAAGAATGAGTTGCAAGA
CATGCCTTGGCAAATTTTTCGGTATTCTCGGGAGTAACATATTCTTTGTT
GCTCTTGTAGCCATGGTAGCTGCTGTTTTCACGCAACGCTGGGCTGTCTC
AAGCCAGCGCGACGTGTCTGTGGCCGGCATGCCTACGAACGCGGATCTTC
AGTTCGGTATCTTCGACATGTCAGCGCGAGTCATGCAGGAAGGAAAAGTG
CAGTGGAGCCAATATTCTTATACGTGGTGCAATGCGAAGGAGACCACGGA
CGATGGAGCTCCTTGGACAAACGAGCGGATGTATTGCAACCTTCTGCTCA
CAGCACAAGCCTGCAGCATCATCTCCCTGGCCACGGGTTTGACAGCCGGT
GTCATCGCCGCTTTCCTCTCTGCCGGCGTCATCGTCAACAAGCGCTTCCG
AGAAATCGCCTGCGCCTCATCATTCTTTATGCTGGTACAGTTCACGTCTG
CCCTCCTCACCTTCGCCTGCTGGTTTGGCATCAACACCAAAATCAACAAC
GACCTTGACAAGGCCTTCCCCGGTATCTTCGTCCGTCCCTCTTACTCTGC
CTTCCTGGCCGTCATTTGCGCCGGCCTGGTCCTCCTGGGATTTATCACCA
CCTCGGCCCTGGGTGGCTGCGGCAAAACGGCGGCCCGAAAGGTAGCGGAG
GAGGAGGAAGAGAGCGAAGACGAGGAGGAGGGGCGTGCAGCACATGCCCC
CCGACAGGCGCGGGACAAGAAGGCGAAGGCGGGGGCGCCCCAGCCTGGCG
CCCAACGCGCGGCGCATGCACAGGCCGCGGGTGGGGAGGAGATGAAGGAG
TCCCAGTAGGACGGCGAGGCACAGGGAGACTGGGTGGGAGGATATGGGCC
GCGAGCAAGGGGAAGAATGGCATTCGAGTGGGCTGGGGCGTCACACAGGA
GGTCATTCTGGGAGTGGGAGCTGGAGAGAGGGAGTTCGTTCTTGGGAGCC
GGGATATTAAGTCACGGAGGACATAAGGGCTCGGGATGGGGAATGGAAAG
CACTGTATTTGGCTGTACGGGCTTGAATGTGCGTGTTTGGGAATGGGAGA
GAAGAAGCAAAGCCGGCGTGAAAAGACCTGGGTCCACGCGAACGGTCGAA
CAAAGTCTATGGGGTTGCAGCAACTGCAGCTGCAGGGAGGGATGTTCAAA
GGGATGCTTGAAGGGATGCTCAAAGGGATGTTCAAAGAAAAAATAAAGTT
GTCGTAAACATACATCCTGTGAGCA back to topprotein sequence of rna6 >rna6-protein ID=rna6-protein|Name=rna6|organism=Nannochloropsis gaditana|type=polypeptide|length=290bp
MLIFSYLERLSAKTPASRASSSILTIMSAETRGDGTTRNLAREFKRAYLS
SYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLEL
VHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWS
CGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEA
REAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYML
RQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD back to topmRNA from alignment at CM002455.1:17762..19522- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6 ID=rna6|Name=rna6|organism=Nannochloropsis gaditana|type=mRNA|length=1761bp|location=Sequence derived from alignment at CM002455.1:17762..19522- (Nannochloropsis gaditana)
ATGCTCATCTTTTCATACCTGGAACGTGCGATTAGTGGCAGGAATGTCGG
GCAAGGCTAAATAACAGGCATTGCGTGATGCAAGGACACATTTCAATAAA
ATCCCACTACCATTTATGTGATCAACCCGCTCACTCAACCATGCAGCAAA
TTGTCGGATCATTGCAAGATAAGGCCTGGTAAATTTTGTTAAATCTTAAC
TACCTGGAGAAGCGCACTTGCTTCATATTTAGCGCACGCCAATATTTGTT
CCTCATTTTCAAACCCCATCATACTCATCTCCAGAGCGCTAAAACACCAG
CAAGTCGCGCGTCCTCTTCGATCCTGACTATCATGTCAGCTGAGACAAGG
GGCGATGGAACGACACGAAATTTAGCCCGTGAATTCAAGCGCGCTTACCT
CTCCTCGTACAATCTCGCGCAAACTGGGCTGTGGGCTACTGTGTTGGCTT
TGACCCTATCTGCCTTGTTTTCAAATGTGCACGACTATGGCGGTGTCTGG
GCTGCTGCGGGTCCTGCGGCAAAATTGGCTGTTGGTGAGTGTGGGGCACC
TTGGTCGGTGGACCCGTCGTGGAGGGAGCAAGTTGACTCGCTTGCCCCAG
ATGAGTTTTTTGGTCGCTGGTTGATTAAGTGAGAAAGCGGGCAGATTCTA
AGAGTTTGGCAATTTTCTCTGCTCATTTGCCTGTCTGAATGCTTTGATGA
CGGTCGTACTACCGTGGCCTTGTCGCGTCAATATGCGCCGCAAGCGTTGC
TGGTGCCCCGACGCGAGCCGGTACCGAGGCTCCTTTGAGGCGTCTTAATC
ACAACTCATGTCGCTTTTATTATCACTTATGCCCCACTTCTACCGGGACT
AGCTGGGGCTTGGTTGGAGCTGGTGCACGTGGCCCTTGGCTTGGCCGGAG
GCAGCGTCTCCTCCGCGTTCTGGCAGAACTTCGGGCGGACATTCGTCCTG
TTCGCGATCGTGGACTCTTTCCAGACCCCGCGGACAGTGGCTTGGCTCCC
AGCCCTGCTGGTTGCTTGGTCATGCGGCGAGCTGGTCCGGTGAGAAGGAG
GATAAATGGGAAGAAGGCCAGTGAGTTGAAGGAGCTCTCAGTCGCGATCG
AGCCTCCTCTACGGCCTCTAATGCATGCCTCACATTGCTGGATCATGTCT
TTCCCTGTGTGCGCCGCTCTTCTTCCCCCCCTAGCTACCCCTTCTACCTC
ATGGGCAGTAATGCCCCGCCTGCCCTCGTCTGGCTCCGTTACTCGGCCTT
CCTCCTCCTGTACCCGGTCGGTATGGCCTCGGAGGTGGCGCTGCTCTTCC
TCACCCTCACGGAGGCGCGAGAGGCTGTCGCGAGGGAAGATAAATTCTGC
CTCCGATTGCCAGGCAAAGGCGCAAGTTGGCGGATACTGAATTTTTATTA
CTTCGTAAGTGGAGGAGAGCTGCGGAGGGCGGAGGGAAAGGAGGACATCG
GTTGCGGACGATAACGCGCGGAATCCTGTCAGGTTTATGTCCTTGCAATG
CATTGTAATCGCTTATTAATCCAATTCATGCCGTTATTTCATCAAATTCC
TCACCTTATACTCTCGGGTCAATAGCTTCTATTCGGGCTGTTGGTGCTCT
ACCCCTTTGCCATTCCCTACATGTACAGTTACATGCTTCGACAGCGTAGG
AAACGACTTAATGTCACAGGAAGGGAAGATGCTATAACAAGGATGTCAGG
AGCAGCCAAATTGCCGGCTGAGATGGTTTCGAGCAGCAAAAAAAGCCGAA
AAGCAGATTGA back to topCoding sequence (CDS) from alignment at CM002455.1:17762..19522- >rna6 ID=rna6|Name=rna6|organism=Nannochloropsis gaditana|type=CDS|length=5238bp|location=Sequence derived from alignment at CM002455.1:17762..19522- (Nannochloropsis gaditana)
CTTCTATTCGGGCTGTTGGTGCTCTACCCCTTTGCCATTCCCTACATGTA
CAGTTACATGCTTCGACAGCGTAGGAAACGACTTAATGTCACAGGAAGGG
AAGATGCTATAACAAGGATGTCAGGAGCAGCCAAATTGCCGGCTGAGATG
GTTTCGAGCAGCAAAAAAAGCCGAAAAGCAGATTGACTACCCCTTCTACC
TCATGGGCAGTAATGCCCCGCCTGCCCTCGTCTGGCTCCGTTACTCGGCC
TTCCTCCTCCTGTACCCGGTCGGTATGGCCTCGGAGGTGGCGCTGCTCTT
CCTCACCCTCACGGAGGCGCGAGAGGCTGTCGCGAGGGAAGATAAATTCT
GCCTCCGATTGCCAGGCAAAGGCGCAAGTTGGCGGATACTGAATTTTTAT
TACTTCCTGGGGCTTGGTTGGAGCTGGTGCACGTGGCCCTTGGCTTGGCC
GGAGGCAGCGTCTCCTCCGCGTTCTGGCAGAACTTCGGGCGGACATTCGT
CCTGTTCGCGATCGTGGACTCTTTCCAGACCCCGCGGACAGTGGCTTGGC
TCCCAGCCCTGCTGGTTGCTTGGTCATGCGGCGAGCTGGTCCGAGCGCTA
AAACACCAGCAAGTCGCGCGTCCTCTTCGATCCTGACTATCATGTCAGCT
GAGACAAGGGGCGATGGAACGACACGAAATTTAGCCCGTGAATTCAAGCG
CGCTTACCTCTCCTCGTACAATCTCGCGCAAACTGGGCTGTGGGCTACTG
TGTTGGCTTTGACCCTATCTGCCTTGTTTTCAAATGTGCACGACTATGGC
GGTGTCTGGGCTGCTGCGGGTCCTGCGGCAAAATTGGCTGTTGGCCTGAT
GCTCATCTTTTCATACCTGGAACCTTCTATTCGGGCTGTTGGTGCTCTAC
CCCTTTGCCATTCCCTACATGTACAGTTACATGCTTCGACAGCGTAGGAA
ACGACTTAATGTCACAGGAAGGGAAGATGCTATAACAAGGATGTCAGGAG
CAGCCAAATTGCCGGCTGAGATGGTTTCGAGCAGCAAAAAAAGCCGAAAA
GCAGATTGACTACCCCTTCTACCTCATGGGCAGTAATGCCCCGCCTGCCC
TCGTCTGGCTCCGTTACTCGGCCTTCCTCCTCCTGTACCCGGTCGGTATG
GCCTCGGAGGTGGCGCTGCTCTTCCTCACCCTCACGGAGGCGCGAGAGGC
TGTCGCGAGGGAAGATAAATTCTGCCTCCGATTGCCAGGCAAAGGCGCAA
GTTGGCGGATACTGAATTTTTATTACTTCCTGGGGCTTGGTTGGAGCTGG
TGCACGTGGCCCTTGGCTTGGCCGGAGGCAGCGTCTCCTCCGCGTTCTGG
CAGAACTTCGGGCGGACATTCGTCCTGTTCGCGATCGTGGACTCTTTCCA
GACCCCGCGGACAGTGGCTTGGCTCCCAGCCCTGCTGGTTGCTTGGTCAT
GCGGCGAGCTGGTCCGAGCGCTAAAACACCAGCAAGTCGCGCGTCCTCTT
CGATCCTGACTATCATGTCAGCTGAGACAAGGGGCGATGGAACGACACGA
AATTTAGCCCGTGAATTCAAGCGCGCTTACCTCTCCTCGTACAATCTCGC
GCAAACTGGGCTGTGGGCTACTGTGTTGGCTTTGACCCTATCTGCCTTGT
TTTCAAATGTGCACGACTATGGCGGTGTCTGGGCTGCTGCGGGTCCTGCG
GCAAAATTGGCTGTTGGCCTGATGCTCATCTTTTCATACCTGGAACCTTC
TATTCGGGCTGTTGGTGCTCTACCCCTTTGCCATTCCCTACATGTACAGT
TACATGCTTCGACAGCGTAGGAAACGACTTAATGTCACAGGAAGGGAAGA
TGCTATAACAAGGATGTCAGGAGCAGCCAAATTGCCGGCTGAGATGGTTT
CGAGCAGCAAAAAAAGCCGAAAAGCAGATTGACTACCCCTTCTACCTCAT
GGGCAGTAATGCCCCGCCTGCCCTCGTCTGGCTCCGTTACTCGGCCTTCC
TCCTCCTGTACCCGGTCGGTATGGCCTCGGAGGTGGCGCTGCTCTTCCTC
ACCCTCACGGAGGCGCGAGAGGCTGTCGCGAGGGAAGATAAATTCTGCCT
CCGATTGCCAGGCAAAGGCGCAAGTTGGCGGATACTGAATTTTTATTACT
TCCTGGGGCTTGGTTGGAGCTGGTGCACGTGGCCCTTGGCTTGGCCGGAG
GCAGCGTCTCCTCCGCGTTCTGGCAGAACTTCGGGCGGACATTCGTCCTG
TTCGCGATCGTGGACTCTTTCCAGACCCCGCGGACAGTGGCTTGGCTCCC
AGCCCTGCTGGTTGCTTGGTCATGCGGCGAGCTGGTCCGAGCGCTAAAAC
ACCAGCAAGTCGCGCGTCCTCTTCGATCCTGACTATCATGTCAGCTGAGA
CAAGGGGCGATGGAACGACACGAAATTTAGCCCGTGAATTCAAGCGCGCT
TACCTCTCCTCGTACAATCTCGCGCAAACTGGGCTGTGGGCTACTGTGTT
GGCTTTGACCCTATCTGCCTTGTTTTCAAATGTGCACGACTATGGCGGTG
TCTGGGCTGCTGCGGGTCCTGCGGCAAAATTGGCTGTTGGCCTGATGCTC
ATCTTTTCATACCTGGAACCTTCTATTCGGGCTGTTGGTGCTCTACCCCT
TTGCCATTCCCTACATGTACAGTTACATGCTTCGACAGCGTAGGAAACGA
CTTAATGTCACAGGAAGGGAAGATGCTATAACAAGGATGTCAGGAGCAGC
CAAATTGCCGGCTGAGATGGTTTCGAGCAGCAAAAAAAGCCGAAAAGCAG
ATTGACTACCCCTTCTACCTCATGGGCAGTAATGCCCCGCCTGCCCTCGT
CTGGCTCCGTTACTCGGCCTTCCTCCTCCTGTACCCGGTCGGTATGGCCT
CGGAGGTGGCGCTGCTCTTCCTCACCCTCACGGAGGCGCGAGAGGCTGTC
GCGAGGGAAGATAAATTCTGCCTCCGATTGCCAGGCAAAGGCGCAAGTTG
GCGGATACTGAATTTTTATTACTTCCTGGGGCTTGGTTGGAGCTGGTGCA
CGTGGCCCTTGGCTTGGCCGGAGGCAGCGTCTCCTCCGCGTTCTGGCAGA
ACTTCGGGCGGACATTCGTCCTGTTCGCGATCGTGGACTCTTTCCAGACC
CCGCGGACAGTGGCTTGGCTCCCAGCCCTGCTGGTTGCTTGGTCATGCGG
CGAGCTGGTCCGAGCGCTAAAACACCAGCAAGTCGCGCGTCCTCTTCGAT
CCTGACTATCATGTCAGCTGAGACAAGGGGCGATGGAACGACACGAAATT
TAGCCCGTGAATTCAAGCGCGCTTACCTCTCCTCGTACAATCTCGCGCAA
ACTGGGCTGTGGGCTACTGTGTTGGCTTTGACCCTATCTGCCTTGTTTTC
AAATGTGCACGACTATGGCGGTGTCTGGGCTGCTGCGGGTCCTGCGGCAA
AATTGGCTGTTGGCCTGATGCTCATCTTTTCATACCTGGAACCTTCTATT
CGGGCTGTTGGTGCTCTACCCCTTTGCCATTCCCTACATGTACAGTTACA
TGCTTCGACAGCGTAGGAAACGACTTAATGTCACAGGAAGGGAAGATGCT
ATAACAAGGATGTCAGGAGCAGCCAAATTGCCGGCTGAGATGGTTTCGAG
CAGCAAAAAAAGCCGAAAAGCAGATTGACTACCCCTTCTACCTCATGGGC
AGTAATGCCCCGCCTGCCCTCGTCTGGCTCCGTTACTCGGCCTTCCTCCT
CCTGTACCCGGTCGGTATGGCCTCGGAGGTGGCGCTGCTCTTCCTCACCC
TCACGGAGGCGCGAGAGGCTGTCGCGAGGGAAGATAAATTCTGCCTCCGA
TTGCCAGGCAAAGGCGCAAGTTGGCGGATACTGAATTTTTATTACTTCCT
GGGGCTTGGTTGGAGCTGGTGCACGTGGCCCTTGGCTTGGCCGGAGGCAG
CGTCTCCTCCGCGTTCTGGCAGAACTTCGGGCGGACATTCGTCCTGTTCG
CGATCGTGGACTCTTTCCAGACCCCGCGGACAGTGGCTTGGCTCCCAGCC
CTGCTGGTTGCTTGGTCATGCGGCGAGCTGGTCCGAGCGCTAAAACACCA
GCAAGTCGCGCGTCCTCTTCGATCCTGACTATCATGTCAGCTGAGACAAG
GGGCGATGGAACGACACGAAATTTAGCCCGTGAATTCAAGCGCGCTTACC
TCTCCTCGTACAATCTCGCGCAAACTGGGCTGTGGGCTACTGTGTTGGCT
TTGACCCTATCTGCCTTGTTTTCAAATGTGCACGACTATGGCGGTGTCTG
GGCTGCTGCGGGTCCTGCGGCAAAATTGGCTGTTGGCCTGATGCTCATCT
TTTCATACCTGGAACCTTCTATTCGGGCTGTTGGTGCTCTACCCCTTTGC
CATTCCCTACATGTACAGTTACATGCTTCGACAGCGTAGGAAACGACTTA
ATGTCACAGGAAGGGAAGATGCTATAACAAGGATGTCAGGAGCAGCCAAA
TTGCCGGCTGAGATGGTTTCGAGCAGCAAAAAAAGCCGAAAAGCAGATTG
ACTACCCCTTCTACCTCATGGGCAGTAATGCCCCGCCTGCCCTCGTCTGG
CTCCGTTACTCGGCCTTCCTCCTCCTGTACCCGGTCGGTATGGCCTCGGA
GGTGGCGCTGCTCTTCCTCACCCTCACGGAGGCGCGAGAGGCTGTCGCGA
GGGAAGATAAATTCTGCCTCCGATTGCCAGGCAAAGGCGCAAGTTGGCGG
ATACTGAATTTTTATTACTTCCTGGGGCTTGGTTGGAGCTGGTGCACGTG
GCCCTTGGCTTGGCCGGAGGCAGCGTCTCCTCCGCGTTCTGGCAGAACTT
CGGGCGGACATTCGTCCTGTTCGCGATCGTGGACTCTTTCCAGACCCCGC
GGACAGTGGCTTGGCTCCCAGCCCTGCTGGTTGCTTGGTCATGCGGCGAG
CTGGTCCGAGCGCTAAAACACCAGCAAGTCGCGCGTCCTCTTCGATCCTG
ACTATCATGTCAGCTGAGACAAGGGGCGATGGAACGACACGAAATTTAGC
CCGTGAATTCAAGCGCGCTTACCTCTCCTCGTACAATCTCGCGCAAACTG
GGCTGTGGGCTACTGTGTTGGCTTTGACCCTATCTGCCTTGTTTTCAAAT
GTGCACGACTATGGCGGTGTCTGGGCTGCTGCGGGTCCTGCGGCAAAATT
GGCTGTTGGCCTGATGCTCATCTTTTCATACCTGGAAC back to top
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