EWM30658.1, cds6 (CDS) Nannochloropsis gaditana

Overview
NameEWM30658.1
Unique Namecds6
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:19498..19522 -
Alignment locationCM002455.1:19345..19349 -
Alignment locationCM002455.1:18989..19238 -
Alignment locationCM002455.1:18484..18670 -
Alignment locationCM002455.1:18119..18338 -
Alignment locationCM002455.1:17762..17947 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30658.1
Product3-hydroxyacyl-dehydratase pasticcino 2a-like protein
Orig transcript idgnl|cribi|Naga_100091g10.5707.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:19498..19522 -
CM002455.1supercontigCM002455.1:19345..19349 -
CM002455.1supercontigCM002455.1:18989..19238 -
CM002455.1supercontigCM002455.1:18484..18670 -
CM002455.1supercontigCM002455.1:18119..18338 -
CM002455.1supercontigCM002455.1:17762..17947 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA
Homology
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|585113354|gb|EWM30658.1| (3-hydroxyacyl-dehydratase pasticcino 2a-like protein [Nannochloropsis gaditana])

HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0
Query:    1 MLIFSYLERLSAKTPASRASSSILTIMSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD 290
            MLIFSYLERLSAKTPASRASSSILTIMSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD
Sbjct:    1 MLIFSYLERLSAKTPASRASSSILTIMSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD 290          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|1149710498|ref|XP_020181319.1| (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 134.42 bits (337), Expect = 8.108e-35
Identity = 87/218 (39.91%), Postives = 130/218 (59.63%), Query Frame = 0
Query:   45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
            KRAYL+ YN A    WA VL   + AL  + H+  GV+AA     +LA   A LE++H  +GL    VS+   Q   R FV + I+ SF   RT   + +L+++WS  E++RY F+    L GS AP +L+WLRYS+FL++YP G++SEV L+++ L    + +   +K+C+R+P K   W    +++Y  +  LLV  P   P+MY+YML QR+K L
Sbjct:    5 KRAYLAVYNWAVFFGWAQVLYFAVDALLRSGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|1149710500|ref|XP_020181320.1| (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 134.42 bits (337), Expect = 9.930e-35
Identity = 87/218 (39.91%), Postives = 130/218 (59.63%), Query Frame = 0
Query:   45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
            KRAYL+ YN A    WA VL   + AL  + H+  GV+AA     +LA   A LE++H  +GL    VS+   Q   R FV + I+ SF   RT   + +L+++WS  E++RY F+    L GS AP +L+WLRYS+FL++YP G++SEV L+++ L    + +   +K+C+R+P K   W    +++Y  +  LLV  P   P+MY+YML QR+K L
Sbjct:    5 KRAYLAVYNWAVFFGWAQVLYFAVDALLRSGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|721648452|ref|XP_003567539.2| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Brachypodium distachyon] >gi|944076302|gb|KQK11786.1| hypothetical protein BRADI_2g62370 [Brachypodium distachyon])

HSP 1 Score: 133.265 bits (334), Expect = 2.320e-34
Identity = 89/223 (39.91%), Postives = 129/223 (57.85%), Query Frame = 0
Query:   40 LAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLN 258
            +A   KRAYLS YN A    WA VL   ++AL    H+  GV+AA     +LA   A LE++H  +GL    VS+   Q   R FV + I+ SF   RT   + +L+++WS  E++RY F+    L GS AP  L+WLRYS+FL++YP G++SEV L+++ L    + +   +K+CLR+P K   W     Y +     LV+Y    P+MY+YML QR+K L+
Sbjct:    1 MAAALKRAYLSVYNWAVFFGWAQVLYYAVTALLGAGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPEVRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSWLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCLRMPNK---WNFSFDYLYASILALVIYVPGSPHMYTYMLGQRKKALS 213          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|669031915|emb|CDM87134.1| (unnamed protein product [Triticum aestivum])

HSP 1 Score: 132.88 bits (333), Expect = 3.350e-34
Identity = 86/218 (39.45%), Postives = 130/218 (59.63%), Query Frame = 0
Query:   45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
            KRAYL++YN A    WA VL   + AL  + H+   V+AA     +LA   A LE++H  +GL    VS+   Q   R FV + I+ SF   RT   + +L+++WS  E++RY F+    L GS AP +L+WLRYS+FL++YP G++SEV L+++ L    + +   +K+C+R+P K   W    +++Y  +  LLV  P   P+MY+YML QR+K L
Sbjct:    5 KRAYLAAYNWAVFFGWAQVLYFAVEALLRSGHE--AVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|475558369|gb|EMT13075.1| (hypothetical protein F775_09786 [Aegilops tauschii])

HSP 1 Score: 132.109 bits (331), Expect = 7.454e-34
Identity = 86/218 (39.45%), Postives = 130/218 (59.63%), Query Frame = 0
Query:   45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
            KRAYL+ YN A    WA VL   ++AL  + H+   V+AA     +LA   A LE++H  +GL    VS+   Q   R FV + I+ SF   RT   + +L+++WS  E++RY F+    L GS AP +L+WLRYS+FL++YP G++SEV L+++ L    + +   +K+C+R+P K   W    +++Y  +  LLV  P   P+MY+YML QR+K L
Sbjct:    5 KRAYLAVYNWAVFFGWAQVLYFAVAALLGSGHE--DVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|729367431|ref|XP_010547596.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 126.331 bits (316), Expect = 1.194e-31
Identity = 83/223 (37.22%), Postives = 129/223 (57.85%), Query Frame = 0
Query:   44 FKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGS---NAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGRE 263
             +RAYL+ YN      WA VL L+L  L  + H++  V+ A     +LA   A LE++H  +GL    VS+   Q   R +V + I+ SF   R+   + +L+++WS  E +RY F+ +     +AP  L+WLRYS+FLLLYP G+ SEV L++L L   +E     +K+C+R+P K  ++   NFY  +L  +L +Y    P+MY+YML QR++ L+ +  E
Sbjct:    8 LRRAYLTLYNWTVFVGWAQVLYLSLKTLKESGHEH--VYEAVEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLYVTWGILYSFPEVRSHFLVTSLVISWSITETIRYSFFGLKEGLGSAPSWLLWLRYSSFLLLYPTGITSEVGLIYLALPHIKET----EKYCIRMPNKW-NFSFDNFYAAIL--VLGIYVPGSPHMYTYMLGQRKRALSKSKSE 221          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|674781074|gb|AIL29211.1| (3-hydroxyacyl-CoA dehydratase [Camellia oleifera])

HSP 1 Score: 125.946 bits (315), Expect = 1.625e-31
Identity = 81/223 (36.32%), Postives = 125/223 (56.05%), Query Frame = 0
Query:   45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGRE 263
            +R YL+ YN      W  VL L L  L  + H++  V+ A      LA + A LE++H  +GL    V++   Q   R +V + I+ SF   RT   + +L+++WS  E++RY F+     +GS AP  L+WLRYS FLLLYP G+ SEV L+++ +   +E+    +K+C+R+P K   W     Y++    +L +Y    P+MY+YML QR+K L  + RE
Sbjct:    9 RRTYLTIYNWTVFVGWFQVLYLALKTLMESGHEH--VYDAVEKPLLLAQSAAVLEILHGLVGLVRSPVTATLPQISSRLYVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKEALGS-APSGLMWLRYSTFLLLYPSGITSEVGLIYIAMPYIKES----EKYCVRMPNK---WNFSFDYFYAAILVLGIYVPGSPHMYTYMLGQRKKALTKSKRE 221          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|1201310339|gb|OVA10810.1| (Protein-tyrosine phosphatase-like [Macleaya cordata])

HSP 1 Score: 124.79 bits (312), Expect = 6.081e-31
Identity = 77/225 (34.22%), Postives = 126/225 (56.00%), Query Frame = 0
Query:   45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSN---APPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFA--IPYMYSYMLRQRRKRLNVTGRE 263
            +R YL++YN      W+ VL L+L  L  + H+   V+ A     +L+   A LE++H  +GL    +++   Q   R  V + I+ SF   R    + +L+++WS  E++RY F+ M      AP  L+WLRYS FL+LYP G+ SE+ L++  L    + +   +K+C+R+P K   W    +++Y  +  LL+ +P    IP+MY YMLRQR+K L+ + R+
Sbjct:    9 RRIYLTTYNWTVFVGWSHVLYLSLKTLKESGHE--NVYVAVERPLQLSQTAAVLEILHGLVGLVRSPITATLPQISSRLHVTWGILWSFPQTRKHKLVSSLVISWSFTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLVLYPTGITSEIGLIYTAL----KYIKGSEKYCIRMPNK---WNFSFDYFYAAILTLLIYFPGMDLIPHMYRYMLRQRKKALSKSKRD 224          
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|548856559|gb|ERN14412.1| (hypothetical protein AMTR_s00033p00239320 [Amborella trichopoda])

HSP 1 Score: 124.405 bits (311), Expect = 1.236e-30
Identity = 80/242 (33.06%), Postives = 129/242 (53.31%), Query Frame = 0
Query:   27 MSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSN---APPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGRED 264
            +S ET    T  +     +R YL+ YN      W  VL L L  L+    DY  V+ A     +LA   A LE++H  +GL    V++   Q   R +V + I+ SF   RT   + +L+++WS  E++RY F+ +      AP  L+WLRYS F + YP G+ SEV L+++ L   + +    DK+C+R+P K   W    +++Y  +  L + +P  + +MY YM+ QR+K L+ +G++D
Sbjct:   14 VSGETVDLATMASFLSTVRRVYLTIYNWMVFVGWFQVLYLALRTLYET--DYTHVYHAVEKPLQLAQTAAVLEILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPETRTHVLVSSLVISWSITEIIRYSFFGLKEALGFAPSWLLWLRYSTFFIFYPTGITSEVGLIYIALPYIKAS----DKYCIRMPNK---WNYAFDYFYAAIVALGIYFPGGL-HMYLYMIGQRKKALSKSGKKD 245          
The following BLAST results are available for this feature:
BLAST of EWM30658.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113354|gb|EWM30658.1|0.000e+0100.003-hydroxyacyl-dehydratase pasticcino 2a-like prote... [more]
gi|1149710498|ref|XP_020181319.1|8.108e-3539.91very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
gi|1149710500|ref|XP_020181320.1|9.930e-3539.91very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
gi|721648452|ref|XP_003567539.2|2.320e-3439.91PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA ... [more]
gi|669031915|emb|CDM87134.1|3.350e-3439.45unnamed protein product [Triticum aestivum][more]
gi|475558369|gb|EMT13075.1|7.454e-3439.45hypothetical protein F775_09786 [Aegilops tauschii... [more]
gi|729367431|ref|XP_010547596.1|1.194e-3137.22PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA ... [more]
gi|674781074|gb|AIL29211.1|1.625e-3136.323-hydroxyacyl-CoA dehydratase [Camellia oleifera][more]
gi|1201310339|gb|OVA10810.1|6.081e-3134.22Protein-tyrosine phosphatase-like [Macleaya cordat... [more]
gi|548856559|gb|ERN14412.1|1.236e-3033.06hypothetical protein AMTR_s00033p00239320 [Amborel... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6rna6Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications