EWM30658.1, cds6 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|585113354|gb|EWM30658.1| (3-hydroxyacyl-dehydratase pasticcino 2a-like protein [Nannochloropsis gaditana]) HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0 Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0
Query: 1 MLIFSYLERLSAKTPASRASSSILTIMSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD 290
MLIFSYLERLSAKTPASRASSSILTIMSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD
Sbjct: 1 MLIFSYLERLSAKTPASRASSSILTIMSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGREDAITRMSGAAKLPAEMVSSSKKSRKAD 290
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|1149710498|ref|XP_020181319.1| (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 134.42 bits (337), Expect = 8.108e-35 Identity = 87/218 (39.91%), Postives = 130/218 (59.63%), Query Frame = 0
Query: 45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
KRAYL+ YN A WA VL + AL + H+ GV+AA +LA A LE++H +GL VS+ Q R FV + I+ SF RT + +L+++WS E++RY F+ L GS AP +L+WLRYS+FL++YP G++SEV L+++ L + + +K+C+R+P K W +++Y + LLV P P+MY+YML QR+K L
Sbjct: 5 KRAYLAVYNWAVFFGWAQVLYFAVDALLRSGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|1149710500|ref|XP_020181320.1| (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 134.42 bits (337), Expect = 9.930e-35 Identity = 87/218 (39.91%), Postives = 130/218 (59.63%), Query Frame = 0
Query: 45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
KRAYL+ YN A WA VL + AL + H+ GV+AA +LA A LE++H +GL VS+ Q R FV + I+ SF RT + +L+++WS E++RY F+ L GS AP +L+WLRYS+FL++YP G++SEV L+++ L + + +K+C+R+P K W +++Y + LLV P P+MY+YML QR+K L
Sbjct: 5 KRAYLAVYNWAVFFGWAQVLYFAVDALLRSGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|721648452|ref|XP_003567539.2| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Brachypodium distachyon] >gi|944076302|gb|KQK11786.1| hypothetical protein BRADI_2g62370 [Brachypodium distachyon]) HSP 1 Score: 133.265 bits (334), Expect = 2.320e-34 Identity = 89/223 (39.91%), Postives = 129/223 (57.85%), Query Frame = 0
Query: 40 LAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLN 258
+A KRAYLS YN A WA VL ++AL H+ GV+AA +LA A LE++H +GL VS+ Q R FV + I+ SF RT + +L+++WS E++RY F+ L GS AP L+WLRYS+FL++YP G++SEV L+++ L + + +K+CLR+P K W Y + LV+Y P+MY+YML QR+K L+
Sbjct: 1 MAAALKRAYLSVYNWAVFFGWAQVLYYAVTALLGAGHE--GVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPEVRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSWLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCLRMPNK---WNFSFDYLYASILALVIYVPGSPHMYTYMLGQRKKALS 213
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|669031915|emb|CDM87134.1| (unnamed protein product [Triticum aestivum]) HSP 1 Score: 132.88 bits (333), Expect = 3.350e-34 Identity = 86/218 (39.45%), Postives = 130/218 (59.63%), Query Frame = 0
Query: 45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
KRAYL++YN A WA VL + AL + H+ V+AA +LA A LE++H +GL VS+ Q R FV + I+ SF RT + +L+++WS E++RY F+ L GS AP +L+WLRYS+FL++YP G++SEV L+++ L + + +K+C+R+P K W +++Y + LLV P P+MY+YML QR+K L
Sbjct: 5 KRAYLAAYNWAVFFGWAQVLYFAVEALLRSGHE--AVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|475558369|gb|EMT13075.1| (hypothetical protein F775_09786 [Aegilops tauschii]) HSP 1 Score: 132.109 bits (331), Expect = 7.454e-34 Identity = 86/218 (39.45%), Postives = 130/218 (59.63%), Query Frame = 0
Query: 45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRL 257
KRAYL+ YN A WA VL ++AL + H+ V+AA +LA A LE++H +GL VS+ Q R FV + I+ SF RT + +L+++WS E++RY F+ L GS AP +L+WLRYS+FL++YP G++SEV L+++ L + + +K+C+R+P K W +++Y + LLV P P+MY+YML QR+K L
Sbjct: 5 KRAYLAVYNWAVFFGWAQVLYFAVAALLGSGHE--DVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKELFGS-APSSLLWLRYSSFLVMYPTGISSEVGLIYIAL----QFIKASEKYCIRMPNK---WNYSFDYFYASILVLLVYVP-GSPHMYTYMLGQRKKAL 211
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|729367431|ref|XP_010547596.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like isoform X1 [Tarenaya hassleriana]) HSP 1 Score: 126.331 bits (316), Expect = 1.194e-31 Identity = 83/223 (37.22%), Postives = 129/223 (57.85%), Query Frame = 0
Query: 44 FKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGS---NAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGRE 263
+RAYL+ YN WA VL L+L L + H++ V+ A +LA A LE++H +GL VS+ Q R +V + I+ SF R+ + +L+++WS E +RY F+ + +AP L+WLRYS+FLLLYP G+ SEV L++L L +E +K+C+R+P K ++ NFY +L +L +Y P+MY+YML QR++ L+ + E
Sbjct: 8 LRRAYLTLYNWTVFVGWAQVLYLSLKTLKESGHEH--VYEAVEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLYVTWGILYSFPEVRSHFLVTSLVISWSITETIRYSFFGLKEGLGSAPSWLLWLRYSSFLLLYPTGITSEVGLIYLALPHIKET----EKYCIRMPNKW-NFSFDNFYAAIL--VLGIYVPGSPHMYTYMLGQRKRALSKSKSE 221
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|674781074|gb|AIL29211.1| (3-hydroxyacyl-CoA dehydratase [Camellia oleifera]) HSP 1 Score: 125.946 bits (315), Expect = 1.625e-31 Identity = 81/223 (36.32%), Postives = 125/223 (56.05%), Query Frame = 0
Query: 45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFY----LMGSNAPPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRILNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGRE 263
+R YL+ YN W VL L L L + H++ V+ A LA + A LE++H +GL V++ Q R +V + I+ SF RT + +L+++WS E++RY F+ +GS AP L+WLRYS FLLLYP G+ SEV L+++ + +E+ +K+C+R+P K W Y++ +L +Y P+MY+YML QR+K L + RE
Sbjct: 9 RRTYLTIYNWTVFVGWFQVLYLALKTLMESGHEH--VYDAVEKPLLLAQSAAVLEILHGLVGLVRSPVTATLPQISSRLYVTWGILWSFPETRTHILVSSLVISWSITEIIRYSFFGTKEALGS-APSGLMWLRYSTFLLLYPSGITSEVGLIYIAMPYIKES----EKYCVRMPNK---WNFSFDYFYAAILVLGIYVPGSPHMYTYMLGQRKKALTKSKRE 221
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|1201310339|gb|OVA10810.1| (Protein-tyrosine phosphatase-like [Macleaya cordata]) HSP 1 Score: 124.79 bits (312), Expect = 6.081e-31 Identity = 77/225 (34.22%), Postives = 126/225 (56.00%), Query Frame = 0
Query: 45 KRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSN---APPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFA--IPYMYSYMLRQRRKRLNVTGRE 263
+R YL++YN W+ VL L+L L + H+ V+ A +L+ A LE++H +GL +++ Q R V + I+ SF R + +L+++WS E++RY F+ M AP L+WLRYS FL+LYP G+ SE+ L++ L + + +K+C+R+P K W +++Y + LL+ +P IP+MY YMLRQR+K L+ + R+
Sbjct: 9 RRIYLTTYNWTVFVGWSHVLYLSLKTLKESGHE--NVYVAVERPLQLSQTAAVLEILHGLVGLVRSPITATLPQISSRLHVTWGILWSFPQTRKHKLVSSLVISWSFTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLVLYPTGITSEIGLIYTAL----KYIKGSEKYCIRMPNK---WNFSFDYFYAAILTLLIYFPGMDLIPHMYRYMLRQRKKALSKSKRD 224
BLAST of EWM30658.1 vs. NCBI_GenBank
Match: gi|548856559|gb|ERN14412.1| (hypothetical protein AMTR_s00033p00239320 [Amborella trichopoda]) HSP 1 Score: 124.405 bits (311), Expect = 1.236e-30 Identity = 80/242 (33.06%), Postives = 129/242 (53.31%), Query Frame = 0
Query: 27 MSAETRGDGTTRNLAREFKRAYLSSYNLAQTGLWATVLALTLSALFSNVHDYGGVWAAAGPAAKLAVAGAWLELVHVALGLAGGSVSSAFWQNFGRTFVLFAIVDSFQTPRTVAWLPALLVAWSCGELVRYPFYLMGSN---APPALVWLRYSAFLLLYPVGMASEVALLFLTLTEAREAVAREDKFCLRLPGKGASWRI-LNFYYFLLFGLLVLYPFAIPYMYSYMLRQRRKRLNVTGRED 264
+S ET T + +R YL+ YN W VL L L L+ DY V+ A +LA A LE++H +GL V++ Q R +V + I+ SF RT + +L+++WS E++RY F+ + AP L+WLRYS F + YP G+ SEV L+++ L + + DK+C+R+P K W +++Y + L + +P + +MY YM+ QR+K L+ +G++D
Sbjct: 14 VSGETVDLATMASFLSTVRRVYLTIYNWMVFVGWFQVLYLALRTLYET--DYTHVYHAVEKPLQLAQTAAVLEILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPETRTHVLVSSLVISWSITEIIRYSFFGLKEALGFAPSWLLWLRYSTFFIFYPTGITSEVGLIYIALPYIKAS----DKYCIRMPNK---WNYAFDYFYAAIVALGIYFPGGL-HMYLYMIGQRKKALSKSGKKD 245 The following BLAST results are available for this feature:
BLAST of EWM30658.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|