NO09G04180, NO09G04180 (gene) Nannochloropsis oceanica

Overview
NameNO09G04180
Unique NameNO09G04180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2173
Alignment locationchr9:1248585..1250757 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1248585..1250757 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G04180 vs. NCBI_GenBank
Match: EWM20240.1 (hypothetical protein Naga_100380g2 [Nannochloropsis gaditana])

HSP 1 Score: 130.6 bits (327), Expect = 1.600e-26
Identity = 94/314 (29.94%), Postives = 156/314 (49.68%), Query Frame = 0 
Query:  265 IFHNNGSFYYATPSLIRRKEIYRSSGSTHDRNSLQAAQETDAEYLILVRLLNYRIDHKGRWYKDFLPAAQDS----GILRSASALFLNAADEGRVLRVLDSRYEKSPTRFM-GTEDPKLLAMTD-----GTIRIIWTSWEYAKAAGEGSRLVMGILDIDSLTIHLDHVFPSPFGHFNEKNWVAFQRPGCNELYFIYEWHP-LRIGVLDQQNGAINFNMTISTPRSFHHLRGSSNGVVYKNDIWLVAHGTTWYEGPGPTYYHRVVVLDSETFEVKRCTYPFKFESFEAAIEFSLGLDIDHLGNVTIAYSVYDGSA 568
            I +NN   Y  T SL   + + R+  + +D          D+   +L+R +NY     G ++      +QDS     +L   S  ++   +     + +  R    P  ++ G ED +  +  D       I  +  S EY+++A   ++L +G+++ D+ T+ +  +   PFG   EKNWV     G   L  +YEW+P +RIG +D+  G    + +I +P SF ++RGS+NG++++N+ W V H      G    Y HR+V+L+ E  +V R + PF F S E  IE+ LGL  D+ G +T  YSV D S+
Sbjct:  233 IVYNNIPVY--TQSLRGHRTLLRAEKNENDPWRFSTPTFLDSH--VLLREVNYFAAEDGSYH-----VSQDSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRFKSTFDYKANSSVIYTLSASMEYSRSANHMNQL-LGVIEPDTWTLTIQDIIRGPFGDRTEKNWVFVN--GIESL--VYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTHRIVILNFEMSQVLRYSLPFTFNS-ETDIEYCLGLKADNEG-LTFGYSVRDKSS 530
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BLAST of NO09G04180 vs. NCBI_GenBank
Match: EWM20170.1 (hypothetical protein Naga_101281g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 100.5 bits (249), Expect = 1.800e-17
Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 0 
Query:  426 PFGHFNEKNWVAFQRPGCNELYFIYEWHP-LRIGVLDQQNGAINFNMTISTPRSFHHLRGSSNGVVYKNDIWLVAHGTTWYEGPGPTYYHRVVVLDSETFEVKRCTYPFKFESFEAAIEFSLGLDIDHLGNVTIAYSVYDGSA 568
            PFG    KNWV     G   L  +YEW+P +RIG +D+  G    + +I +P SF ++RGS+NG++++N+ W V H      G    Y +R+V+L+ E  ++ R + PF F S E  IE+ LGL  D+ G +T  YSV D S+
Sbjct:    4 PFGDRTGKNWVFVN--GIESL--VYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTNRMVILNFEMSQILRYSLPFTFNS-ETDIEYCLGLKADNEG-LTFGYSVRDKSS 140
[Close]
BLAST of NO09G04180 vs. NCBI_GenBank
Match: YP_009174077.1 (putative glycosyl transferase [Yellowstone lake mimivirus] >BAT21964.1 putative glycosyl transferase [Yellowstone lake mimivirus])

HSP 1 Score: 100.1 bits (248), Expect = 2.400e-17
Identity = 81/281 (28.83%), Postives = 135/281 (48.04%), Query Frame = 0 
Query:  303 ETDAEYLILVRLLNYRIDHKGRWYKDFLPAAQDSGILRSASALFLNAADEGRVLRVLDSRYEKSPTRFMGTEDPKL-------------LAMTDGTIRIIWTSWEYAKAAGEGSRLVMGILDIDSLTIHLDHVFPSPFGHFN-EKNWVAFQRPGCNELYFIYEWHPLRIGVLDQQNGAINFNMTISTPRSFHHLRGSSNGVVYKNDIWLVAHGTTWYEGPGPTYYHRVVVLDSETFEVKRCTYPFKFESFEAAIEFSLGLDIDHLGNVTIAYSVYDGSAVL 570
            + D +Y++ VR++NY ID+ G ++        +  I+     + L++  +  +++      +    R++G ED ++             L      I  I T +      G    +V G  D+DS  I   +   + F   N EKNWV  +    NE + IY+WHPL++  LD+++  I     I  P  F   RGS+ G  Y+++IW V H  + YE P   YYH +VVLD+   ++KR + PFKF+     IE+ +GL ++    V + YS +D +  L
Sbjct:  395 KVDNQYVMNVRMVNYLIDNNGNYHD------CEKHIITINKYVVLDS--DFTIVKEQQFNQDYVDRRYIGIEDLRIFQNSLDNVLDNNGLDNEKREINYIGTGYHQNNKIG----IVYGKYDLDSEEITDINEINTAFTTSNCEKNWVFTEYN--NETHIIYKWHPLQLCKLDKKDNLIRLVKEIEMPAFFSLSRGSTCGSKYEDEIWFVVHIVS-YEEP-RHYYHCLVVLDN-NMKLKRYSAPFKFKG--ETIEYCIGLLVEE-DRVIMTYSCWDRTTQL 655
The following BLAST results are available for this feature:
BLAST of NO09G04180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20240.11.600e-2629.94hypothetical protein Naga_100380g2 [Nannochloropsi... [more]
EWM20170.11.800e-1739.16hypothetical protein Naga_101281g2, partial [Nanno... [more]
YP_009174077.12.400e-1728.83putative glycosyl transferase [Yellowstone lake mi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04180.1NO09G04180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642662gene_9661Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04180.1NO09G04180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04180 ID=NO09G04180|Name=NO09G04180|organism=Nannochloropsis oceanica|type=gene|length=2173bp
GTGCGGACTTGATCGATGAGTCTCGGCAAGAGCAATTTCAGCCACTCCTT
TCCCTCCCACCCCACAGCCTTCCAGTCCCGCAAACAATAAGGGCATGAAT
GTCCAGCCTTCGCATAGAATATATGAACTGGTGGGATCTTCTTTCATGAC
CAGAAGACAGCATCGTAGAGTGAGAGCATATTTCATCATGTTGTTATTGG
CTTCAAGTGGTATCTACATTACCTTTGTACACAGGATGTTGCGCACGTTA
AATTCGCAGCAAAAAAATCATGTTGCATCACGTGGAGAATCATTTCCTTT
GTATCATAACGAGAGCTTTTCTCTAAAGCGCGCCGATCCAATACTGGAGT
CGGCAGACACCTGTTACGGAAGCCGAAATTACCAAAAGGCAGTGCTTCTA
TACCACGAAGCTCGAAAAGCAGCCATTAAATTTAGCAATGACGTAAACTT
ATACCACAGCCTTTATAAACTGTCTCAATGCCATGTGGCACTCAACAATA
CAGAGGCAGCGATTTACTATGCCCAAAGGGCCTTTGAAGTCAATCCCCGA
CCCGAGCCCATGTTTCACGTGGCCCAGTTCCTCGACGGTCTAGATGAAGA
AGGAGTATCCAGTGAAGACTTCTATAATGCCGCCTGCCGCACAGTCTTTA
GCCGCCCATCTAGCTTCTCAGAACATAATATTAACGAAAAATTGCGCTTC
ATAGATAAATCAACGTTGTGGCCGCGACAATTTTCTCAAGAGTACCTGAC
AAAGCTTGCCTCGCTTCAGGCCATCGTAGACGATGACGAAGCATCTATAG
AGATCCACGAACAGATACATTGGGAGATAACCACAAGTGCACGAGCAATT
TTGGATTGTTCGCAAGAACTATTTCGCCGGGAAGGTATATTCCATAACAA
CGGCAGTTTCTACTACGCAACACCGTCTCTGATCCGTCGCAAAGAAATAT
ATAGGAGTAGCGGTAGCACCCACGACAGAAATAGTCTGCAAGCCGCGCAG
GAGACTGACGCGGAGTACCTTATCTTGGTCAGGCTCCTAAACTATCGCAT
CGACCATAAGGGTAGATGGTATAAGGACTTTCTGCCAGCGGCCCAGGATT
CGGGCATATTGCGGAGTGCATCAGCCTTGTTTTTGAATGCCGCAGATGAA
GGCAGAGTCCTTCGGGTACTCGACAGTCGTTACGAAAAATCTCCAACACG
TTTCATGGGAACAGAGGATCCAAAGTTGCTGGCGATGACCGACGGCACAA
TTCGCATTATTTGGACAAGTTGGGAATATGCTAAGGCGGCAGGGGAGGGA
TCCCGACTGGTTATGGGCATTTTGGATATAGATTCTCTGACGATTCACTT
GGATCACGTGTTTCCCAGCCCCTTTGGCCACTTTAATGAGAAAAACTGGG
TGGCCTTCCAACGGCCAGGCTGCAATGAACTTTATTTTATCTATGAATGG
CATCCTTTGAGAATAGGTGTTCTGGACCAGCAGAACGGCGCTATTAATTT
CAACATGACGATTTCTACGCCGCGAAGCTTTCATCATTTGCGAGGCTCCT
CTAATGGAGTTGTCTACAAAAATGACATTTGGCTGGTTGCGCACGGGACT
ACGTGGTATGAGGGACCAGGCCCTACGTACTACCACCGCGTAGTAGTATT
AGATTCAGAAACGTTTGAGGTGAAACGCTGCACGTATCCTTTCAAATTTG
AGTCTTTCGAGGCTGCCATTGAATTTTCGCTTGGACTTGATATTGACCAT
CTTGGAAACGTGACAATCGCCTATAGTGTATATGATGGATCCGCGGTATT
GCGTCGAATCCCTATCTGGAAGCTGGAGGCGCTGATGGTGACGTCGCATG
AATAATATCTCAAGAATCAGCTTTAGATTTTGTGATGGAACGAAATAGAT
ATAAATATGTTCGAGGCCAAGGATTGCCTTGTACATACATATTGAAGATT
CCTCTCTTTCAGTCATTATTTTGGGATATTTTTAAGGCAAATTAGCAATA
GAGGGCTTTGTTTTTGAGCTCATCTTCTCTTATCTATGAGCACTTGTTGC
CGGAGAGAGTAAGATCGACGCAGTCAGTAAGGGAAGGCATGTATGGGCAG
GGTGACTTTTTGGCCACTAGTGTGCAAGCAAATGCCCTCGCAAGGGCTCC
TCACACACCTTCAAAACGCAGTC
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protein sequence of NO09G04180.1

>NO09G04180.1-protein ID=NO09G04180.1-protein|Name=NO09G04180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MNVQPSHRIYELVGSSFMTRRQHRRVRAYFIMLLLASSGIYITFVHRMLR
TLNSQQKNHVASRGESFPLYHNESFSLKRADPILESADTCYGSRNYQKAV
LLYHEARKAAIKFSNDVNLYHSLYKLSQCHVALNNTEAAIYYAQRAFEVN
PRPEPMFHVAQFLDGLDEEGVSSEDFYNAACRTVFSRPSSFSEHNINEKL
RFIDKSTLWPRQFSQEYLTKLASLQAIVDDDEASIEIHEQIHWEITTSAR
AILDCSQELFRREGIFHNNGSFYYATPSLIRRKEIYRSSGSTHDRNSLQA
AQETDAEYLILVRLLNYRIDHKGRWYKDFLPAAQDSGILRSASALFLNAA
DEGRVLRVLDSRYEKSPTRFMGTEDPKLLAMTDGTIRIIWTSWEYAKAAG
EGSRLVMGILDIDSLTIHLDHVFPSPFGHFNEKNWVAFQRPGCNELYFIY
EWHPLRIGVLDQQNGAINFNMTISTPRSFHHLRGSSNGVVYKNDIWLVAH
GTTWYEGPGPTYYHRVVVLDSETFEVKRCTYPFKFESFEAAIEFSLGLDI
DHLGNVTIAYSVYDGSAVLRRIPIWKLEALMVTSHE*
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Synonyms
Publications