NO09G04030, NO09G04030 (gene) Nannochloropsis oceanica

Overview
NameNO09G04030
Unique NameNO09G04030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1666
Alignment locationchr9:1183794..1185459 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1183794..1185459 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G04030 vs. NCBI_GenBank
Match: XP_005854455.1 (hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526] >XP_005854696.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21661.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21901.1 hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.1 bits (518), Expect = 7.600e-49
Identity = 114/260 (43.85%), Postives = 156/260 (60.00%), Query Frame = 0 
Query:  103 PLRPLLEPTMASILQARDLICQNIASLAKRQKLDRAKTQNVQGLIQLTSKARHTVDCSAGLLPLLQHLLASQPQAFVPPSNGRSAEQXXXXXXXXXXXXXXXXXXXXXXFSQTPPSIPSMAGLVQHLAADESACYAVSFVDPLGVESIWCNQRMSDLFMTSEELQGLVLHTGMGTPHFWARFLTGPGLADLTAAFTSLLVGPSAHLSLDAVLDCCVKESTKEGMPAGVRKCVASVGMVVTDEGPGSILILRVLPCGRRDL 363
            P  PLL+ T ASIL AR+ +   IA LA +  LD  K  N + LI+  S+AR   D +AG+LPLL HLL +QPQAF P    R A+                          +    PS++ L+Q LAADE+ACY V+ V+  G+ES+WCN RMS+LF++SEEL+GL   T M    FW RFL+GPGL +L  AF++++V  +   SLD +L+CCV+ + K        KC+A+VGM++     G++LILR+LPCGR DL
Sbjct:  287 PSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAP--KRRKAKSGGVGERGPPAGGAQ---------GNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDL 535
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BLAST of NO09G04030 vs. NCBI_GenBank
Match: EWM27402.1 (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 7.600e-49
Identity = 114/260 (43.85%), Postives = 156/260 (60.00%), Query Frame = 0 
Query:  103 PLRPLLEPTMASILQARDLICQNIASLAKRQKLDRAKTQNVQGLIQLTSKARHTVDCSAGLLPLLQHLLASQPQAFVPPSNGRSAEQXXXXXXXXXXXXXXXXXXXXXXFSQTPPSIPSMAGLVQHLAADESACYAVSFVDPLGVESIWCNQRMSDLFMTSEELQGLVLHTGMGTPHFWARFLTGPGLADLTAAFTSLLVGPSAHLSLDAVLDCCVKESTKEGMPAGVRKCVASVGMVVTDEGPGSILILRVLPCGRRDL 363
            P  PLL+ T ASIL AR+ +   IA LA +  LD  K  N + LI+  S+AR   D +AG+LPLL HLL +QPQAF P    R A+                          +    PS++ L+Q LAADE+ACY V+ V+  G+ES+WCN RMS+LF++SEEL+GL   T M    FW RFL+GPGL +L  AF++++V  +   SLD +L+CCV+ + K        KC+A+VGM++     G++LILR+LPCGR DL
Sbjct:  287 PSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAP--KRRKAKSGGVGERGPPAGGAQ---------GNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDL 535
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BLAST of NO09G04030 vs. NCBI_GenBank
Match: EWM20727.1 (hypothetical protein Naga_102498g1 [Nannochloropsis gaditana])

HSP 1 Score: 72.0 bits (175), Expect = 4.500e-9
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 0 
Query:  217 PSIP--SMAGLVQHLAADESACYAVSFVDPLGVESIWCNQRMSDLFMTSEELQGLVLHTGMGTPHFWARFLTGPGLADLTAAFTSLLVGPSAHLSLDAVL 315
            P IP  +   L   L  DE+ACY VS         + CNQRM+ LF+ + E+QGLV  TG+G+  FW RF+    L  L AA  +L++G  +   +D VL
Sbjct:   17 PLIPRCTATALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVL 116
[Close]
BLAST of NO09G04030 vs. NCBI_GenBank
Match: XP_005852550.1 (hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526] >EKU23282.1 hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.1 bits (157), Expect = 5.500e-7
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 0 
Query:  225 LVQHLAADESACYAVSFVDPLGVESIWCNQRMSDLFMTSEELQGLVLHTGMGTPHFWARFLTGPGLADLTAAFTSLLVGPSAHLSLD------AVLDCCVKESTKEGMPAGVRKCVASVGMVVTDEGPGSILILRVLPCGRRDLGVGMGGKGEDGER 376
            L   LA D +AC  V F     V  + CN RMS LFM++EE++GL+  TG     FW+ FL      D+ A     L+  SA L LD      + +D  V  +T++G      + +A++G   + E     LILR++P G  D+ VG+  +G +G R
Sbjct:  395 LFLRLARDTTACLMV-FRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDP---VDVEA-----LLAGSADLVLDKFNQGRSSIDRIVGVTTRDGRWG---RAMATLGW-HSSEDVVQTLILRLIPLGFHDVPVGVREEGREGGR 538
The following BLAST results are available for this feature:
BLAST of NO09G04030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854455.17.600e-4943.85hypothetical protein NGA_0244301 [Nannochloropsis ... [more]
EWM27402.17.600e-4943.85hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
EWM20727.14.500e-940.00hypothetical protein Naga_102498g1 [Nannochloropsi... [more]
XP_005852550.15.500e-734.39hypothetical protein NGA_0687300 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006229NSK006229Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G04030.1NO09G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607299gene_9675Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100212g6gene3158Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G04030.1NO09G04030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G04030 ID=NO09G04030|Name=NO09G04030|organism=Nannochloropsis oceanica|type=gene|length=1666bp
ATGCCCTCGCCCTTCTGTCCTCCGTGGCCGTCCACGCCCTCTCCGCATCC
TTGGACAAgtaagttcctggtagagcaggggaagaaggcgcgcacacaca
acatgcccgagcctagtatgtgtgttgcactgcaactgaacttccacttc
tcactacacgcccgtgccccgcttctccccatccaacacagCCCTCAGTC
TCCAAGACGTATTGACATGGAGCATCTGGAGGAAAGACAGCAAGGCCAGT
TGCTGCGgtcggcaggaaaaaaaaaggattttttctttgacaatgtctcg
tcctcatcctcctcttcatcctcccgcccaactacgtcatccctctcctc
atcatcttcatctccccccctcccttctcattgctgccttctttgccttg
tctacgcaacatcattccagCCTCCACGCTGCCCCTACATCCTCACATGC
GGCAGCGACAGCAGCAGAACCAGCAGCAGTATCACAAACAGCAGCAATAT
CATCAGCAGCTCCAACAGCAGCAGCAGCACTGCCAGCAGCAGCAACTGTA
CCGATATCAAGAACAGCAGCAGCACTACCACCAAGCCCAGTCTTCTTCAC
ATCCGCTTCGTCCCCTTCTGGAGCCCACCATGGCCAGCATCCTCCAGGCA
CGCGACTTGATATGTCAAAACATCGCCTCCTTGGCGAAGCGACAAAAGCT
TGACCGTGCCAAGACCCAGAACGTGCAGGGCCTGATCCAGTTGACGTCGA
AGGCCCGGCATACCGTAGACTGCTCCGCGGGCCTGCTCCCTTTGCTGCAG
CATCTGCTTGCCTCGCAGCCCCAGGCGTTTGTTCCTCCGAGTAATGGTAG
ATCCGCAGAGCAGGGAGGAAAGACGATGGAACGAGGAGGATTAGAGAGAG
GAGGAGGAGGAGTAGGTGATGGTGGTGGCTTTTCTCAGACTCCTCCGAGT
ATCCCTTCCATGGCCGGCCTCGTGCAGCACCTGGCGGCAGACGAGAGTGC
ATGCTACGCCGTGAGTTTTGTGGACCCGCTGGGGGTCGAGAGCATCTGGT
GCAACCAGCGCATGAGCGACCTCTTCATGACCAGCGAGGgtaagagggtc
acgcgacgggtgtgcccctgtctgtgtctctcaggactttctgcgatccg
cgctctctcccttcccctccccatcgttttttcactcgtccccacgtgcc
ctcttcccttcctcctcatcaaccacaaacgtaacttcaagcccacttgc
cggccgatcctcattctcctcttcttctctctctctctttccttcctcga
gAGCTCCAAGGCCTCGTCTTGCACACAGGAATGGGCACTCCGCACTTCTG
GGCCCGCTTCCTGACAGGCCCGGGCCTGGCCGACCTCACAGCCGCCTTCA
CTTCCCTCCTCGTCGGCCCCTCCGCCCACCTCTCCCTTGATGCCGTGCTC
GACTGCTGTGTAAAGGAGAGCACGAAAGAGGGCATGCCGGCGGGGGTCAG
GAAGTGTGTGGCCAGCGTGGGTATGGTCGTCACGGATGAGGGGCCTGGCA
GCATTTTGATCCTCCGGGTGCTTCCGTGTGGGAGGAGGGACTTAGGGGTG
GGGATGGGAGGGAAGGGGGAGGACGGAGAGAGAGAGGAGGAGGAGTATGC
CAGACCCTTGATGTAG
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protein sequence of NO09G04030.1

>NO09G04030.1-protein ID=NO09G04030.1-protein|Name=NO09G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MPSPFCPPWPSTPSPHPWTTLSLQDVLTWSIWRKDSKASCCASTLPLHPH
MRQRQQQNQQQYHKQQQYHQQLQQQQQHCQQQQLYRYQEQQQHYHQAQSS
SHPLRPLLEPTMASILQARDLICQNIASLAKRQKLDRAKTQNVQGLIQLT
SKARHTVDCSAGLLPLLQHLLASQPQAFVPPSNGRSAEQGGKTMERGGLE
RGGGGVGDGGGFSQTPPSIPSMAGLVQHLAADESACYAVSFVDPLGVESI
WCNQRMSDLFMTSEELQGLVLHTGMGTPHFWARFLTGPGLADLTAAFTSL
LVGPSAHLSLDAVLDCCVKESTKEGMPAGVRKCVASVGMVVTDEGPGSIL
ILRVLPCGRRDLGVGMGGKGEDGEREEEEYARPLM*
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Synonyms
Publications