NO09G03940.1, NO09G03940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03940.1
Unique NameNO09G03940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr9:1157222..1158145 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1157222..1158145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03940.1 vs.
Match: XP_005853966.1 (retinol dehydrogenase 14 [Nannochloropsis gaditana CCMP526]; EKU22391.1 retinol dehydrogenase 14 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 185.3 bits (469), Expect = 2.100e-43
Identity = 103/138 (74.64%), Postives = 116/138 (84.06%), Query Frame = 0 
Query:   71 MELVIEASVGLAGAVSSIALYRGIKRRLYPDNE---LYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRS-SPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEKGG 205
            ME++IEA+VGLAGA SS+ALYRGIKRRL P  E    YA+DG+MAGRTVLVTGANSGVG AAAE+LARKGAHV+CACRDM KAEATA+AIN+RLPR+  PS  P GRA PAPAPLDLASL SVRAF D+F RE  + G
Sbjct:    1 MEMLIEATVGLAGAASSVALYRGIKRRLCPSQEERDFYAMDGSMAGRTVLVTGANSGVGRAAAEILARKGAHVMCACRDMPKAEATASAINRRLPRTVPPSSSPCGRASPAPAPLDLASLASVRAFVDAFERERGEEG 138
The following BLAST results are available for this feature:
BLAST of NO09G03940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853966.12.100e-4374.64retinol dehydrogenase 14 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03940NO09G03940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03940.1NO09G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03940.1.cds1NO09G03940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03940.1.cds2NO09G03940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03940.1.cds3NO09G03940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03940.1 ID=NO09G03940.1|Name=NO09G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
ATGATGAGAGTTGCGCGAGACTCGAGAAGCTTGTTCTTCGATGCCGATGT
AGGTGACATCCATATATCACACAGGCGCTCCTTCATTTACTTCTCATTCC
CGCGTGAGTCCTCTGTATCCTGGCTCTTCGGCTCCTCTCCTCGGTCCTTA
TCATTATCCGTCGCTAACACTCCTAGCCCACTCCTTTGGTTTCCAATCGA
GTGGGCGTCAATGGAACTTGTGATTGAAGCAAGTGTTGGTCTAGCTGGTG
CGGTATCCTCCATTGCGCTTTACCGTGGGATCAAGCGTCGTTTGTACCCG
GACAACGAGCTGTACGCCGTGGACGGCACCATGGCCGGACGCACGGTTCT
AGTGACGGGCGCCAACAGTGGGGTGGGCTTGGCGGCCGCGGAGCTTCTGG
CGCGCAAGGGTGCCCATGTAGTTTGTGCATGCCGGGATATGGCCAAGGCG
GAAGCCACCGCCGCAGCGATAAACAAACGTCTCCCTCGTTCTTCCCCGTC
TCTCCCTCCCTCCGGCCGTGCCTTCCCTGCACCCGCCCCACTGGACCTCG
CCTCCCTGCCCAGTGTGCGCGCGTTTGCGGATTCGTTTTTAAGGGAAATG
GAAAAAGGAGGAGCAGGAAGAGGAGTAGGAGGAATGGGGGGGGAGGGTCG
CTGCACGTGCTCGTAA
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protein sequence of NO09G03940.1

>NO09G03940.1-protein ID=NO09G03940.1-protein|Name=NO09G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MMRVARDSRSLFFDADVGDIHISHRRSFIYFSFPRESSVSWLFGSSPRSL
SLSVANTPSPLLWFPIEWASMELVIEASVGLAGAVSSIALYRGIKRRLYP
DNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKA
EATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREM
EKGGAGRGVGGMGGEGRCTCS*
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mRNA from alignment at chr9:1157222..1158145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03940.1 ID=NO09G03940.1|Name=NO09G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at chr9:1157222..1158145- (Nannochloropsis oceanica)
ATGATGAGAGTTGCGCGAGACTCGAGAAGCTTGTTCTTCGATGCCGATGT
AGGTGACATCCATGTAAGTAGTGCTACATCTCGCAAACATAGGCTTCATG
GGCTCACCTCCTCTCCCCGTAGATATCACACAGGCGCTCCTTCATTTACT
TCTCATTCCCGCGTGAGTCCTCTGTATCCTGGCTCTTCGGCTCCTCTCCT
CGGTCCTTATCATTATCCGTCGCTAACACTCCTAGCCCACTCCTTTGGTT
TCCAATCGAGTGGGCGTCAATGGAACTTGTGATTGAAGCAAGTGTTGGTC
TAGCTGGTGCGGTATCCTCCATTGCGCTTTACCGTGGGATCAAGCGTCGT
TTGTACCCGGACAACGAGCTGTACGCCGTGGACGGCACCATGGCCGGACG
CACGGTTCTAGTGACGGGCGCCAACAGTGGGGTGGGCTTGGCGGCCGCGG
AGCTTCTGGCGCGCAAGGTGAGTGAGCGAGTAGCTGAAAGGGTTGTAGGC
GAGAGCAGGGAAATATCGGGAGACAGGGTTGGCAAGGAATCGACGCGCTA
AGCGCTGGCTACGCACTAGGAGGGCGCACGTGCTTCGATACCGCATAAAT
ATCTCTTCCGCTCAGTGTCCCTCCCTTCTCTTTTGCCACCCTCGCTTGCT
TGCTCACACTGTACAGGGTGCCCATGTAGTTTGTGCATGCCGGGATATGG
CCAAGGCGGAAGCCACCGCCGCAGCGATAAACAAACGTCTCCCTCGTTCT
TCCCCGTCTCTCCCTCCCTCCGGCCGTGCCTTCCCTGCACCCGCCCCACT
GGACCTCGCCTCCCTGCCCAGTGTGCGCGCGTTTGCGGATTCGTTTTTAA
GGGAAATGGAAAAAGGAGGAGCAGGAAGAGGAGTAGGAGGAATGGGGGGG
GAGGGTCGCTGCACGTGCTCGTAA
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Coding sequence (CDS) from alignment at chr9:1157222..1158145-

>NO09G03940.1 ID=NO09G03940.1|Name=NO09G03940.1|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at chr9:1157222..1158145- (Nannochloropsis oceanica)
ATGATGAGAGTTGCGCGAGACTCGAGAAGCTTGTTCTTCGATGCCGATGT
AGGTGACATCCATATATCACACAGGCGCTCCTTCATTTACTTCTCATTCC
CGCGTGAGTCCTCTGTATCCTGGCTCTTCGGCTCCTCTCCTCGGTCCTTA
TCATTATCCGTCGCTAACACTCCTAGCCCACTCCTTTGGTTTCCAATCGA
GTGGGCGTCAATGGAACTTGTGATTGAAGCAAGTGTTGGTCTAGCTGGTG
CGGTATCCTCCATTGCGCTTTACCGTGGGATCAAGCGTCGTTTGTACCCG
GACAACGAGCTGTACGCCGTGGACGGCACCATGGCCGGACGCACGGTTCT
AGTGACGGGCGCCAACAGTGGGGTGGGCTTGGCGGCCGCGGAGCTTCTGG
CGCGCAAGGGTGCCCATGTAGTTTGTGCATGCCGGGATATGGCCAAGGCG
GAAGCCACCGCCGCAGCGATAAACAAACGTCTCCCTCGTTCTTCCCCGTC
TCTCCCTCCCTCCGGCCGTGCCTTCCCTGCACCCGCCCCACTGGACCTCG
CCTCCCTGCCCAGTGTGCGCGCGTTTGCGGATTCGTTTTTAAGGGAAATG
GAAAAAGGAGGAGCAGGAAGAGGAGTAGGAGGAATGGGGGGGGAGGGTCG
CTGCACGTGCTCGTAA
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Synonyms
Publications