NO09G03940, NO09G03940 (gene) Nannochloropsis oceanica

Overview
NameNO09G03940
Unique NameNO09G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr9:1157222..1158145 -

Link to JBrowse

Properties
Property NameValue
DescriptionRetinol dehydrogenase 14
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1157222..1158145 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR002347Glc/ribitol_DH
Homology
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_005853966.1 (retinol dehydrogenase 14 [Nannochloropsis gaditana CCMP526] >EKU22391.1 retinol dehydrogenase 14 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 185.3 bits (469), Expect = 2.100e-43
Identity = 103/138 (74.64%), Postives = 116/138 (84.06%), Query Frame = 0 
Query:   71 MELVIEASVGLAGAVSSIALYRGIKRRLYPDNE---LYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRS-SPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEKGG 205
            ME++IEA+VGLAGA SS+ALYRGIKRRL P  E    YA+DG+MAGRTVLVTGANSGVG AAAE+LARKGAHV+CACRDM KAEATA+AIN+RLPR+  PS  P GRA PAPAPLDLASL SVRAF D+F RE  + G
Sbjct:    1 MEMLIEATVGLAGAASSVALYRGIKRRLCPSQEERDFYAMDGSMAGRTVLVTGANSGVGRAAAEILARKGAHVMCACRDMPKAEATASAINRRLPRTVPPSSSPCGRASPAPAPLDLASLASVRAFVDAFERERGEEG 138
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: EWM27409.1 (retinol dehydrogenase 14 [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 3.600e-43
Identity = 103/138 (74.64%), Postives = 116/138 (84.06%), Query Frame = 0 
Query:   71 MELVIEASVGLAGAVSSIALYRGIKRRLYPDNE---LYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRS-SPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEKGG 205
            ME++IEA+VGLAGA SS+ALYRGIKRRL P  E    YA+DG+MAGRTVLVTGANSGVG AAAE+LARKGAHV+CACRDM KAEATA+AIN+RLPR+  PS  P GRA PAPAPLDLASL SVRAF D+F RE  + G
Sbjct:    1 MEMLIEATVGLAGAASSVALYRGIKRRLCPSQEERDFYAMDGSMAGRTVLVTGANSGVGRAAAEILARKGAHVMCACRDMPKAEATASAINRRLPRTVPPSSSPWGRASPAPAPLDLASLASVRAFVDAFERERGEEG 138
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_002591475.1 (hypothetical protein BRAFLDRAFT_105245 [Branchiostoma floridae] >EEN47486.1 hypothetical protein BRAFLDRAFT_105245 [Branchiostoma floridae])

HSP 1 Score: 72.4 bits (176), Expect = 2.000e-9
Identity = 45/95 (47.37%), Postives = 56/95 (58.95%), Query Frame = 0 
Query:  108 DGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            D  + G+T +VTGANSG+G AAA+ LA +GA V+ ACRDM KAE  A+ I +           +G        LDLASL SVR FAD   RE E+
Sbjct:   37 DARLDGKTAIVTGANSGIGRAAAQELAARGARVILACRDMTKAETAASDIRQ----------ATGNGNVVAGKLDLASLASVREFADHVNREEER 121
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_020481997.1 (retinol dehydrogenase 11-like [Labrus bergylta])

HSP 1 Score: 72.0 bits (175), Expect = 2.600e-9
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 0 
Query:   70 SMELVIEASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            +M L+  A  GL GAV+ + L      R Y    +      + G+TVL+TGAN+G+G   A  +A +GA V+ ACRD+ K E  AA+I    PR+   +            LDLA   S+RAFA  FLRE+ +
Sbjct:   44 AMMLLFVAVAGL-GAVTLLVLLFSTHIRSYAAGGVCMSTAPLEGKTVLITGANTGIGKETALDMAVRGARVIMACRDVDKGEEAAASIRAACPRADVEV----------RELDLADTCSIRAFAQKFLREVNE 165
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_054493714.1 (short chain dehydrogenase [Ardenticatena maritima] >GAP63946.1 hypothetical protein ARMA_2369 [Ardenticatena maritima] >KPL89292.1 short-chain dehydrogenase [Ardenticatena maritima])

HSP 1 Score: 71.2 bits (173), Expect = 4.400e-9
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 0 
Query:  113 GRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            G+ ++VTGANSG+G   A  LA KGAHVV ACR   +AEA AA I    PR             A   LDLA L SVRAFAD+F ++ ++
Sbjct:   15 GKIIIVTGANSGIGYETARALAHKGAHVVMACRSRERAEAAAARIRAENPRGE----------LAVLDLDLADLASVRAFADTFTQQYDR 94
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_101388210.1 (KR domain-containing protein [Streptomyces sp. TLI_146] >PKV85610.1 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) [Streptomyces sp. TLI_146])

HSP 1 Score: 71.2 bits (173), Expect = 4.400e-9
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0 
Query:  112 AGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSF 197
            +GRT +VTGANSG+GL  A  LARKGAHV+ ACR  A+ +   + IN+++  +              APLDLA L SVRAFA+SF
Sbjct:   14 SGRTAVVTGANSGIGLVTARELARKGAHVILACRSEARGKEAESLINRQVYGADVEF----------APLDLADLSSVRAFAESF 88
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: XP_006641820.1 (PREDICTED: retinol dehydrogenase 13-like [Lepisosteus oculatus])

HSP 1 Score: 70.9 bits (172), Expect = 5.800e-9
Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 0 
Query:   62 LWFPIEWASMELVIEASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            +W   +W S+       +   GAV+ +     +  R +    +      + G+TVL+TGAN+G+G   A  LAR+GA VV ACRD+AKAEA AA I +           +G    A   LDLASL SVR FA  +L   E+
Sbjct:    1 MWDQGQWFSL-------LTRCGAVTVVTAISLVLLRKWISGGVCRSRARLDGKTVLITGANTGIGKETARDLARRGARVVIACRDLAKAEAAAAEIRR----------TTGNGNVAVRHLDLASLCSVRQFARDYLASEER 124
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: NP_001002325.1 (retinol dehydrogenase 11 [Danio rerio] >AAH76473.1 Retinol dehydrogenase 12 (all-trans and 9-cis) [Danio rerio] >AAI63997.1 Rdh12 protein [Danio rerio])

HSP 1 Score: 70.9 bits (172), Expect = 5.800e-9
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 0 
Query:   77 ASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGT------MAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREME 202
            A V  A  +  +AL   I R L P    YA  G+      + G+  LVTGANSG+G   A  LA +GA V+ ACRD+ KAE  AA I  R+          G A      LDLA   S+RAFA  FLRE++
Sbjct:    3 ALVAFAAGLGLVAL---ILRLLSPQIRKYAAGGSCRSTVRLDGKVALVTGANSGIGKETALDLASRGARVILACRDLEKAEEAAAEIRTRV----------GGAKVEVRELDLADCCSIRAFAQRFLREVD 120
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_090165454.1 (KR domain-containing protein [Lewinella agarilytica] >SEP85043.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lewinella agarilytica])

HSP 1 Score: 70.9 bits (172), Expect = 5.800e-9
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 0 
Query:  111 MAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            M  +T+L+TGAN G+G A AE LA +GAH+V ACRD  KA+ TA AI  +          +G       PLDL+S  SVRA AD FL E  K
Sbjct:    1 MEDKTILITGANDGIGRATAERLAARGAHLVLACRDEVKAQQTAQAITSK----------TGNHRIDTLPLDLSSFRSVRAAADEFLAEHPK 82
[Close]
BLAST of NO09G03940 vs. NCBI_GenBank
Match: WP_020566866.1 (SDR family oxidoreductase [Lewinella persica])

HSP 1 Score: 70.5 bits (171), Expect = 7.500e-9
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 0 
Query:  111 MAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREMEK 203
            M  +T+L+TGAN G+G A AE LA  GAH+V ACRD  KA+ TA AI ++          +G       PLDLAS  S+RA AD FL E  K
Sbjct:    1 MKDKTILITGANDGIGRATAERLAGWGAHLVLACRDEVKAQLTAQAITEK----------TGNQNIDTLPLDLASFSSIRAAADEFLAEHPK 82
The following BLAST results are available for this feature:
BLAST of NO09G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853966.12.100e-4374.64retinol dehydrogenase 14 [Nannochloropsis gaditana... [more]
EWM27409.13.600e-4374.64retinol dehydrogenase 14 [Nannochloropsis gaditana... [more]
XP_002591475.12.000e-947.37hypothetical protein BRAFLDRAFT_105245 [Branchiost... [more]
XP_020481997.12.600e-937.59retinol dehydrogenase 11-like [Labrus bergylta][more]
WP_054493714.14.400e-947.78short chain dehydrogenase [Ardenticatena maritima]... [more]
WP_101388210.14.400e-949.41KR domain-containing protein [Streptomyces sp. TLI... [more]
XP_006641820.15.800e-936.88PREDICTED: retinol dehydrogenase 13-like [Lepisost... [more]
NP_001002325.15.800e-941.22retinol dehydrogenase 11 [Danio rerio] >AAH76473.1... [more]
WP_090165454.15.800e-947.83KR domain-containing protein [Lewinella agarilytic... [more]
WP_020566866.17.500e-947.83SDR family oxidoreductase [Lewinella persica][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006220NSK006220Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03940.1NO09G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03940.1NO09G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03940 ID=NO09G03940|Name=NO09G03940|organism=Nannochloropsis oceanica|type=gene|length=924bp
ATGATGAGAGTTGCGCGAGACTCGAGAAGCTTGTTCTTCGATGCCGATGT
AGGTGACATCCATgtaagtagtgctacatctcgcaaacataggcttcatg
ggctcacctcctctccccgtagATATCACACAGGCGCTCCTTCATTTACT
TCTCATTCCCGCGTGAGTCCTCTGTATCCTGGCTCTTCGGCTCCTCTCCT
CGGTCCTTATCATTATCCGTCGCTAACACTCCTAGCCCACTCCTTTGGTT
TCCAATCGAGTGGGCGTCAATGGAACTTGTGATTGAAGCAAGTGTTGGTC
TAGCTGGTGCGGTATCCTCCATTGCGCTTTACCGTGGGATCAAGCGTCGT
TTGTACCCGGACAACGAGCTGTACGCCGTGGACGGCACCATGGCCGGACG
CACGGTTCTAGTGACGGGCGCCAACAGTGGGGTGGGCTTGGCGGCCGCGG
AGCTTCTGGCGCGCAAGgtgagtgagcgagtagctgaaagggttgtaggc
gagagcagggaaatatcgggagacagggttggcaaggaatcgacgcgcta
agcgctggctacgcactaggagggcgcacgtgcttcgataccgcataaat
atctcttccgctcagtgtccctcccttctcttttgccaccctcgcttgct
tgctcacactgtacagGGTGCCCATGTAGTTTGTGCATGCCGGGATATGG
CCAAGGCGGAAGCCACCGCCGCAGCGATAAACAAACGTCTCCCTCGTTCT
TCCCCGTCTCTCCCTCCCTCCGGCCGTGCCTTCCCTGCACCCGCCCCACT
GGACCTCGCCTCCCTGCCCAGTGTGCGCGCGTTTGCGGATTCGTTTTTAA
GGGAAATGGAAAAAGGAGGAGCAGGAAGAGGAGTAGGAGGAATGGGGGGG
GAGGGTCGCTGCACGTGCTCGTAA
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protein sequence of NO09G03940.1

>NO09G03940.1-protein ID=NO09G03940.1-protein|Name=NO09G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MMRVARDSRSLFFDADVGDIHISHRRSFIYFSFPRESSVSWLFGSSPRSL
SLSVANTPSPLLWFPIEWASMELVIEASVGLAGAVSSIALYRGIKRRLYP
DNELYAVDGTMAGRTVLVTGANSGVGLAAAELLARKGAHVVCACRDMAKA
EATAAAINKRLPRSSPSLPPSGRAFPAPAPLDLASLPSVRAFADSFLREM
EKGGAGRGVGGMGGEGRCTCS*
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Synonyms
Publications