NO09G03870, NO09G03870 (gene) Nannochloropsis oceanica

Overview
NameNO09G03870
Unique NameNO09G03870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1999
Alignment locationchr9:1123292..1125290 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1123292..1125290 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO09G03870 vs. NCBI_GenBank
Match: EWM27414.1 (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana])

HSP 1 Score: 265.8 bits (678), Expect = 1.500e-67
Identity = 137/176 (77.84%), Postives = 149/176 (84.66%), Query Frame = 0 
Query:   99 AEIRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDDGMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKATSTGSSSQKPLEEDDADLFEDGEDV 275
            A    L+ + LPSAALC GA PPQP+ AFGEDIAAKVQKSL EDTTKKYT+DGMDLVETLK+RTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVM+KDGQYVLLTE++Y TLK EGKIVGRDFVVDY+  SAPAAVEAP++EEE           QK LEEDDADLFEDG+ V
Sbjct:   47 AIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEXXXXXXXXXXXQKTLEEDDADLFEDGDAV 222
[Close]
BLAST of NO09G03870 vs. NCBI_GenBank
Match: EWM27415.1 (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 1.000e-55
Identity = 116/154 (75.32%), Postives = 130/154 (84.42%), Query Frame = 0 
Query:   99 AEIRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDDGMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKATST 253
            A    L+ + LPSAALC GA PPQP+ AFGEDIAAKVQKSL EDTTKKYT+DGMDLVETLK+RTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVM+KDGQYVLLTE++Y TLK EGKIVGRDFVVDY+V   P+A  +P+     + A+ T
Sbjct:   47 AIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSA-SSPLAHGGSRTASPT 199
[Close]
BLAST of NO09G03870 vs. NCBI_GenBank
Match: XP_005854010.1 (hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526] >XP_005854320.1 hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >EKU22044.1 hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >EKU22347.1 hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 192.6 bits (488), Expect = 1.600e-45
Identity = 109/176 (61.93%), Postives = 119/176 (67.61%), Query Frame = 0 
Query:   99 AEIRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDDGMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKATSTGSSSQKPLEEDDADLFEDGEDV 275
            A    LL + LPSAALC GA PPQP+ AFGEDIAAKVQKSL EDTTKKYT+DGMDLVETLK+R                              FIPVM+KDGQYVLLTEE+Y TLK EGKIVGRDFVVDY+  SAPAAVEAP++EEE           QK LEEDDADLFEDG+ V
Sbjct:   47 AVFHHLLAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR------------------------------FIPVMKKDGQYVLLTEEQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEXXXXXXXXXXXQKTLEEDDADLFEDGDAV 192
[Close]
BLAST of NO09G03870 vs. NCBI_GenBank
Match: GAX18112.1 (hypothetical protein FisN_25Hh093 [Fistulifera solaris])

HSP 1 Score: 66.2 bits (160), Expect = 1.800e-7
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0 
Query:  145 KKYTDDGMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQ-YVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPI 242
            ++  +   +L+E L++++I NK KN+ I+ +KTF N ++  +GPFDK + +M  DGQ + LL   +   LK+ G I GR FV         AA +A +
Sbjct:  123 QRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNTDGQTFTLLNNPQAMRLKDAGFIQGRKFVKQPTADEIEAAAKAEV 220
[Close]
BLAST of NO09G03870 vs. NCBI_GenBank
Match: GAX10056.1 (hypothetical protein FisN_25Lh093 [Fistulifera solaris])

HSP 1 Score: 66.2 bits (160), Expect = 1.800e-7
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0 
Query:  145 KKYTDDGMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQ-YVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPI 242
            ++  +   +L+E L++++I NK KN+ I+ +KTF N ++  +GPFDK + +M  DGQ + LL   +   LK+ G I GR FV         AA +A +
Sbjct:  123 QRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNMDGQTFTLLNNPQAMRLKDAGFIQGRKFVKQPTADEIEAAAKAEV 220
The following BLAST results are available for this feature:
BLAST of NO09G03870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM27414.11.500e-6777.84hypothetical protein Naga_100138g7 [Nannochloropsi... [more]
EWM27415.11.000e-5575.32hypothetical protein Naga_100138g7 [Nannochloropsi... [more]
XP_005854010.11.600e-4561.93hypothetical protein NGA_0184802 [Nannochloropsis ... [more]
GAX18112.11.800e-735.71hypothetical protein FisN_25Hh093 [Fistulifera sol... [more]
GAX10056.11.800e-735.71hypothetical protein FisN_25Lh093 [Fistulifera sol... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL117nonsL117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR056ncniR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006207NSK006207Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03870.1NO09G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280611gene_9693Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100138g7gene3144Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03870.1NO09G03870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03870 ID=NO09G03870|Name=NO09G03870|organism=Nannochloropsis oceanica|type=gene|length=1999bp
CGTCCTTTGGCATGATTCACCTGTGCATGTGTGCGTGGGTCGTGGGTTAG
AACAGGGTTTGGGAAGGAGGAAAGGGGCAGAGACGTCCAACAGCGATAAG
AGCGAACGGTCGAGCCCAAGCGCTGCTGCAACTTAGGGGCGACTGCAGCT
AGCAGCATCCATCGCCCAACGTACGTTGGTCTTGTTGTTGTGGTCGATAT
AAAGAGCGGCATGTCGGACGCGGCCGTGTATGCACGGTCAGCAAGGTTGC
AACCTCCTCCCTTCCTCAGGAGGGCTCTATCTCCTCTCCCCCTCCCCCCC
CACTTTCTCATCCCCTCTCACCATCCTCCGTCCCACTCAACATGTACACA
CAGCCAACCCCCTAACCACTACTATGGTAATTAGACGGCCTTGTTTCTTC
CTACCCCTCCTGCTGGCCGGGGCGGCCATCATCAGCCCCTCCTTAGCATT
CTTACCCCCATCCACCCCTCCTCCCCCCGCCTCCTCCTCCTCCTCCTTCT
CCTCCACTGCCACCATCATTTCCGCCGAAATCCGTCGTCTCCTCCCCCTA
TTTCTCCCCTCGGCTGCCTTGTGTCTAGGTGCCACCCCGCCACAGCCGTC
TTACGCTTTTGGGGAAGACATCGCGGCCAAGgtaaggcaaatgggaggcg
gaggcggggagggacgaacgacgcacaggagaggacattgagacattgac
atccctggagctcgccgtcgagtaccacctacgtgtgcctattctccatg
tgtgtacctacccatcaccagtgtttcacgtctttttcttctctactgcc
tctgcacagGTGCAGAAGTCCCTAAAGGAGGACACGACCAAGAAGTACAC
GGACGACGGCATGGACCTCGTCGAGACCCTGAAAAAACGgtgcgtagctt
ggaaacgagaggatggaggagctttagaagagggggaaatcgaagaataa
atgcgtgccttggacgattggttcagattctcgtgctcttgccccgaaca
cgcgagattgtccgtcctgtcgagaagagggcctctacacaattcctgaa
ccattttccccccgccctccctcaccccctctctccctgtccctcccgtc
ttatccccttgcagCACCATCCAGAACAAGGCCAAGAACGACCGTATTTT
GATGGAGAAAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCG
ACAAgtagggagggagggagggagagagggagggagggcaggggacgaag
tacccagaagtgagagatccccacgcacaactccacctccccccctccct
ccctccctcgctctggtagGTTCATCCCGGTGATGCGGAAGGACGGGCAG
TACGTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGGGCAA
GATCGTCGGCAGGGATTTCGTCGTCGATTATGAAgtacgtccctctcttc
cctccctccctccctccctccctccctctcatcttcttcaattcttcctc
cccttaatacctacctacctacctacctacctacctccctccctcccagG
TGGCAAGCGCCCCGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGAC
AAGAAGGCCACATCCACAGgtaggcaggcaggcaaggagggaaggaggga
gggagggacaggagggggggagggaggggaggaagacaatgccagatcca
caggtagggagggagggagggagggagggagggagggagggaggaagacc
cattggtcaaagagaagggcggggagggagggaggaagaggggaggaagg
gagggaggacgaagaactcatttctctcttgatgtttgtcgtcccgtcca
gGATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGA
GGACGGCGAAGACGTCGTGTAGAGGGAGGGAAGGAGGGAGAGAAGGAGGG
AGGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGA
back to top

protein sequence of NO09G03870.1

>NO09G03870.1-protein ID=NO09G03870.1-protein|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MHGQQGCNLLPSSGGLYLLSPSPPTFSSPLTILRPTQHVHTANPLTTTMV
IRRPCFFLPLLLAGAAIISPSLAFLPPSTPPPPASSSSSFSSTATIISAE
IRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDD
GMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDG
QYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKAT
STGSSSQKPLEEDDADLFEDGEDVV*
back to top
Synonyms
Publications