NO09G03200, NO09G03200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G03200 vs. NCBI_GenBank
Match: EWM27480.1 (rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 379.8 bits (974), Expect = 7.400e-102 Identity = 194/273 (71.06%), Postives = 214/273 (78.39%), Query Frame = 0 Query: 7 SSSIIYGSLLLALVASMTQGYFFPSPLAPMQKRCM-NAHRLSNRGAVLPRLRLPPLPSSISDFLDDDKDSVARPAPXXXXXXXXXXXXXXQDDNLEYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRTMAKKEGG 279 SS II G+L LA V ++TQGY FP +Q+RCM + R G R L P+PSSISDFLDD D P P X D N++YFVRCGRC+AAY+V ADLV+PEGGRVKCEVCGHTWFQASNRLQVLS GYVLKDYP+DL+EKVAENVRNNRHPLDTSA+KGAISVFVGNLPFSM E D++ MF HGGVVSVTIVKDQLNRSKGFGFVEMA KEEGE AIAALDGRE+DGRPINVRLGTSKAQPRMRK+RT K+ GG Sbjct: 4 SSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSXAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGG 276
BLAST of NO09G03200 vs. NCBI_GenBank
Match: XP_005789164.1 (hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516] >EOD36735.1 hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 123.6 bits (309), Expect = 9.600e-25 Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 0 Query: 104 VRCGRCSAAYSVPADLVKPEGG-RVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMR 268 + C C A+YSV D + P G RV+C C H WFQ+ RL L + L +YP ++++++A + ++ A +VGNLPF + EE++ ++FG +G VV V ++ D+ RS+GF FV M + EEG A+ AL+G + GR INV G + R R Sbjct: 49 ITCSNCKASYSVEEDALGPGAGKRVRCSNCDHEWFQSVARLARLPEDMELVEYPQEMKDRMAAG--------KPAEARAAFRAYVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQGRAINVSEGRQQEGGRGR 205
BLAST of NO09G03200 vs. NCBI_GenBank
Match: XP_005710926.1 (unnamed protein product [Chondrus crispus] >CDF40632.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 118.6 bits (296), Expect = 3.100e-23 Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 0 Query: 97 DDNLEYFVRCGRCSAAYSVPADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNR------HPLDTSASKGAI----------------------SVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLG 259 D YF +CG C AAY + D P G +V C VCG+ WFQ ++RL L QG K+YP D ++++ E + R D +G S+F+GNLPF+ +ED++ + G V I++D RSKGF F ++ +E + A++ LDG+E+ GR I VR G Sbjct: 100 DPTATYFTKCGSCQAAYKLDPDFPGPRGKKVACSVCGNQWFQRADRLMTLRQGDQFKEYPVDQKDELMEKQQQLRMERFRARSNDGGDRRGGYRRDGPREGQGARRSNSRNFSPHSLFIGNLPFNTEQEDLERVVGQVVEFTRVAIIRDPTGRSKGFAFADVKSEEAVQMAVSKLDGKELGGRAITVREG 289
BLAST of NO09G03200 vs. NCBI_GenBank
Match: CBJ27692.1 (RNA recognition motif-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 114.4 bits (285), Expect = 5.800e-22 Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 0 Query: 103 FVRCGRCSAAYSVPADL-VKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGA-ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLG 259 +V+CG+C A Y P DL V G ++C VCG+ WFQ + R L+ +++KD+ +D AE +A K A ++FVGN+PFS+ E+D+ +FG G V S +V D+ S+G+G V+M +E+G +AI AL+G EI GR + V++G Sbjct: 139 YVKCGKCQACY--PMDLEVLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAE-----------AAKKFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVG 283
BLAST of NO09G03200 vs. NCBI_GenBank
Match: GAX25626.1 (hypothetical protein FisN_28Hh106 [Fistulifera solaris]) HSP 1 Score: 114.4 bits (285), Expect = 5.800e-22 Identity = 54/155 (34.84%), Postives = 91/155 (58.71%), Query Frame = 0 Query: 103 FVRCGRCSAAYSVPA-DLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVR 257 +VRCG+C + + + D G R++C VC H+WFQ+ ++L L++G+ + P+ E++ N++ P G +++GN+ F E+D+ +FG G V V++V+D R++GFGF+ M KE+GE+AI L+G + GR I VR Sbjct: 43 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQNNMQKGLSP----KFMGDFKLYIGNIAFECHEDDLYEVFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEDGEKAIEELNGAPVRGRNIAVR 193
BLAST of NO09G03200 vs. NCBI_GenBank
Match: GAX21414.1 (RNA binding protein fox-1 [Fistulifera solaris]) HSP 1 Score: 113.2 bits (282), Expect = 1.300e-21 Identity = 55/155 (35.48%), Postives = 90/155 (58.06%), Query Frame = 0 Query: 103 FVRCGRCSAAYSVPA-DLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVR 257 +VRCG+C + + + D G R++C VC H+WFQ+ ++L L++G+ + P+ E++ N++ P G ++VGN+ F E+D+ +FG G V V++V+D R++GFGF+ M KE GE+AI L+G + GR I VR Sbjct: 54 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQSNMQKGLSP----KFMGDFKLYVGNIAFECHEDDLYEIFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIEELNGTPVRGRNIAVR 204
BLAST of NO09G03200 vs. NCBI_GenBank
Match: XP_005821647.1 (hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712] >EKX34667.1 hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712]) HSP 1 Score: 109.4 bits (272), Expect = 1.900e-20 Identity = 57/161 (35.40%), Postives = 92/161 (57.14%), Query Frame = 0 Query: 103 FVRCGRCSAAYSV-PADLVKPEGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRHPLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQ-LNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSK 262 + CG+C A Y + PADL +G +V+C VC + WFQ++ RL G + +P +K + KGA ++FVGNLPF + E +++ +F HG VVSV+++ DQ R +GFGFV+ ++ ++A++ L+G +DGR I+V + K Sbjct: 55 YTTCGKCGAVYVINPADL-GSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSISEDK 214
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_093919651.1 (RNA-binding protein [Sunxiuqinia elliptica] >SFF23879.1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [Sunxiuqinia elliptica]) HSP 1 Score: 84.7 bits (208), Expect = 4.900e-13 Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 0 Query: 183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKD-QLNRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDR 271 ++++VGNL +++GE+++ +F +G VVSV IVKD + R+KGFGFVEMAV+ EG++A+ LDG E++GR I V + + R+DR Sbjct: 1 MNIYVGNLDYNLGEDELGEIFAEYGEVVSVKIVKDRETGRAKGFGFVEMAVEAEGDKAVEELDGAEVNGRNIKVNKARPRPERPPRRDR 89
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_014812077.1 (RNA-binding protein [Desulfomonile tiedjei] >AFM26957.1 RRM domain-containing RNA-binding protein [Desulfomonile tiedjei DSM 6799]) HSP 1 Score: 84.0 bits (206), Expect = 8.400e-13 Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 0 Query: 182 AISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDR 271 +I ++VGNL F E D+K +F +G V S ++ DQ NRS+GFGF+EM +EEG +AI ALD +++ GRP+ V K R R+DR Sbjct: 2 SIKIYVGNLSFDSSEADLKGLFSTYGEVESAKVIVDQFTNRSRGFGFIEMTNREEGLKAIQALDSKDLAGRPLKVNEAKPKTDNRDRRDR 91
BLAST of NO09G03200 vs. NCBI_GenBank
Match: WP_086103155.1 (RNA-binding protein [Chitinophagaceae bacterium IBVUCB2] >OSZ80701.1 RNA-binding protein [Chitinophagaceae bacterium IBVUCB2]) HSP 1 Score: 83.2 bits (204), Expect = 1.400e-12 Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 0 Query: 183 ISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQL-NRSKGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQ 264 ++++VGNL +++ ++D+ N+F AHG VVS IV D+ NRSKGFGFVEMA E+ + AIAAL+G E+DGR I V K + Sbjct: 1 MNIYVGNLSWNLKDQDLSNLFAAHGEVVSAKIVTDKFTNRSKGFGFVEMANDEQAQAAIAALNGSEVDGRGIVVNESRPKPE 82 The following BLAST results are available for this feature:
BLAST of NO09G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G03200 ID=NO09G03200|Name=NO09G03200|organism=Nannochloropsis oceanica|type=gene|length=1958bpback to top protein sequence of NO09G03200.1 >NO09G03200.1-protein ID=NO09G03200.1-protein|Name=NO09G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bpback to top Synonyms
Publications
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