NO09G02650, NO09G02650 (gene) Nannochloropsis oceanica

Overview
NameNO09G02650
Unique NameNO09G02650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2700
Alignment locationchr9:792028..794727 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:792028..794727 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO09G02650 vs. NCBI_GenBank
Match: EWM27533.1 (hypothetical protein Naga_100015g32 [Nannochloropsis gaditana])

HSP 1 Score: 521.2 bits (1341), Expect = 4.300e-144
Identity = 278/439 (63.33%), Postives = 323/439 (73.58%), Query Frame = 0 
Query:  157 IQRPPCSLQPFTPAATRAPLQSQSRHNQRPSPPKRQRIIAWARRLRWQRKQR----KFDSCTFDDFDRTTLPEPEAARKKLLASLLVGAGASGTLLLSILLRTMPLGKRAIFSAAPLAGTLLPYFLCLARGLPLASVGRWHNVSAIGHRLGGVGALVLPLVLVVQEAMTSSHVSVLLYTSTILAIFSNLLFGVALIPTRFPGYDIPAARGLAVGTLYGLSFLGWSLTFRFGAYGWYGPIGKLFAIIAVYAVVFSWSDAGQNMYFWWKGKYKTELGRKWFLPFEPSLFRQVFGSNLWRQPRADALQASLMTAWQGSLPTIFVALLGSASLLQLPYLLWGPASMQQLVNSYPGLARWATYQALLAVAANNFATFLVTLVVHNRLPLGHVAFYNVCVPLIPLLNIAAFCWRYPGVSLSLIVRLLVRAPGREIVAGVPPALLS 592
            ++ P C   P  P   R  LQ     +    PP       W   L+   K +    K       D++ +   EP+ ARKK +ASL+VG GAS TLL SI  RTMPLGKRA  S APLA TLLPYFLC+ARGLPL +VG W +++AIGHRLGG+GAL+LPLVLVV+EA+T++H   LLY  T+  I  NLLFGVALIP+RFP YDIPAARGLAVGTLYGL+FLGWS TFRFG   WY PIG+L A++A YAV FSWSDAGQN+  W +G YKT+LGRKW+LPFE S   QVFGSNLWRQP ADAL ASLMTAWQG  PT+FVALLGS++LLQLPYLLWG A  + L  + P L RWATYQAL AVAANNFATFLVTLVVH+RLPL HVAFYNV VPLIP LNIAAFCWRYPG+++ LI++LL+R PG   V  +P A LS
Sbjct:   67 VRYPRCRTAPSPPTCLRQALQ----FHDPLKPP-------WLALLKADHKLKQATVKAAGNMAQDYELSPSLEPKIARKKFVASLVVGIGASMTLLASICFRTMPLGKRAFLSIAPLAATLLPYFLCVARGLPLVNVGSWRSLNAIGHRLGGIGALLLPLVLVVREALTNTHAPGLLYGVTVATILMNLLFGVALIPSRFPAYDIPAARGLAVGTLYGLAFLGWSTTFRFGGQAWYAPIGRLSALVAAYAVAFSWSDAGQNIRCWRRGMYKTKLGRKWYLPFERSSLTQVFGSNLWRQPSADALDASLMTAWQGCAPTVFVALLGSSALLQLPYLLWGSAYTRSLTMACPALTRWATYQALAAVAANNFATFLVTLVVHSRLPLHHVAFYNVLVPLIPTLNIAAFCWRYPGMNIPLILQLLLRPPGAGCVQAMPAAWLS 494
The following BLAST results are available for this feature:
BLAST of NO09G02650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27533.14.300e-14463.33hypothetical protein Naga_100015g32 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010761NSK010761Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02650.1NO09G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588602gene_4282Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g32gene3005Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02650.1NO09G02650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02650 ID=NO09G02650|Name=NO09G02650|organism=Nannochloropsis oceanica|type=gene|length=2700bp
CTTCAACTGCCGGGGCAGTTTTGCCCCAAATTTTTGATTTGAGCTTTGAT
GCCCTTCCCTTGTCCTTCTTTTCCAAGTGCAGGTTGTCGACCACACACAT
GCGCGCCTATTCAACGAATCATCAGGGATAGCGGGATGGGAATGACCGCG
TCGACCGCTCGTATTTTCAACCCGAGTCCAAGCCTCTCTCGAACCATGGT
GCAATTGCCGAGCTCAGCAAGACCCACCCTCCCTCCTCCCCCCCCCACAG
CCACCATGTCTCTACCTGTGCGAAAACGACATGCATGGCCCCTACTTCGA
CAATCATGGATATCTTGGCCTCTCTTGCCGCCGCTAATCGCGCTGTTGTT
CCCAACAACTGCAGAGGCGCGGAGGGCATCAATTACGGCGTTTTATTCTG
TGCCCGTCGCTTTGCCATCACGCCGCTTTGCCTCTCAGCAGTCAATATTA
CGCAAGTCACACAGCCTTCTGCCCATCTCCTTGTCGCCCTCTCGCGTTCT
ATCGGCGCCTGTACAAATACAAAGGCCACCGTGCTCTCTCCAACCTTTCA
CACCAGCAGCAACACGAGCCCCACTCCAGTCTCAATCCCGTCATAACCAG
CGACCATCACCCCCCAAACGTCAACGGATAATAGCGTGGGCGAGACGTCT
TCGATGGCAAAGAAAACAACGGAAATTTGACTCCTGTACATTCGATGATT
TTGATCGGACCACATTACCGGAGCCGGAGGCCGCACGCAAGAAGCTGTTA
GCCAGCCTGCTCGTCGGGGCAGGCGCATCTGGTACGCTTCTACTGTCTAT
TTTGCTTCGAACCATGCCTTTGGGTAAGCGAGCCATCTTCTCTGCGGCGC
CATTGGCAGGGACTCTGTTGCCGTATTTCTTGTGTTTGGCGCGGGGGCTG
CCATTGGCGAGCGTGGGTAGGTGGCATAACGTGAGTGCAATCGGCCATCG
GCTCGGTGGGGTCGGGGCTTTGGTGCTACCTCTTGTCCTGGTGGTGCAGG
AGGCAATGACAAGCAGTCATGTTTCTGTCCTTTTGTATACGTCGACTATC
CTCGCCATTTTTAGCAACCTTCTGTTTGGTGTTGCCTTGATCCCGACTCG
TTTCCCCGGGTATGATATACCTGCTGCTCGAGGCCTGGCTGTGGGGACTC
TGTATGGACTGTCTTTCTTGGGATGGAGCTTGACGTTTCGATTCGGGGCA
TATGGGTGGTACGGGCCGATAGGGAAGTTGTTTGCTATAATTGCTGTGTA
TGCAGTAGTATTTTCATGGAGTGACGCTGGGCAGAACATGTATTTTTGGT
GGAAAGGGAAATACAAGACGGAATTGGGGAGGAAGTGGTTTTTGCCATTT
GAACCCTCCTTGTTCCGGCAGGTGTTTGGGAGTAATTTGTGGCGGCAACC
GAGGGCGGATGCATTGCAAGCTTCTTTGATGACCGCGTGGCAAGGGAGTT
TACCCACGATTTTTGTCGCCCTTCTGGGATCTGCATCCCTGCTCCAACTA
CCGTACCTCTTGTGGGGGCCTGCCTCAATGCAACAGCTGGTGAATTCTTA
CCCTGGCCTAGCCAGATGGGCGACGTACCAAGCCCTTCTTGCGGTGGCTG
CTAACAATTTCGCTACCTTTCTAGTGACCCTCGTGGTGCACAATCGACTG
CCGCTGGGTCATGTAGCTTTTTACAACGTGTGTGTGCCCTTGATCCCGCT
TTTGAATATCGCCGCGTTTTGCTGGCGATATCCGGGGGTGAGCTTGTCGT
TGATTGTGAGGCTGTTGGTGAGGGCACCGGGGAGGGAGATAGTCGCGGGT
GTACCGCCCGCGTTGTTGTCGTGAGGAAGGCAGGGAGGCTGGGAGGCAGG
TATAGGAGCTCGGTATTTGTACTTGCATTTTTGATATCGATAAAATTGTA
AACTGTTTTTTTGCAGACGAGGACGTGGAGTGGATTATATGTGTTTGTAG
GTATTGGAGGATAAAATTATTACCAAACAGCTTTGAAGCGACTCGTGCAC
GGGGGAAAATATCGAAATGAATACAAATGAGAGGAGAAATAATGACACAC
ACATAATCATGAACCAGAAACGCTCAACGATACAATATAAGTAGTGACGT
GGTCTTGTTTGCTGCAGAGTTTTCCTTCTTGGTGTTTCCATCCCGCCCCA
TCCTCTTCTCACACATACACACACACACACACACACACACACACACACAC
ACGCACGCCCGTACTTTCTTGTCTTTATAATTCACGGCGGAAAGTGACTC
ACTGTACATACACTATTTGGTCCATTCCTTTGATACCCACCCCTGCTCCC
TCTCTTTCACCCTTTGCCATCATACAGACCCTCTCCCCGTAGCAAAGCCA
TGCGATCGCCTACTCCCACCGAGACAGATGACGACAGCTCTCCTCCTCCA
CCACAACCACCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCCACTCCCCCT
CCTCCCCCACTCCCTTGCTCGCCTGTGTCGGTGTCCGTTTACTCGGTACC
GGCGCCAAACCCCCGATGCCACTACTCCTCCCTCCCTCCCTCCGTCCCAT
GCCATCCGACAGAAGCTGCTCTTCCTTCACCATCACCTCCATCCCTATTC
CTCCCGACGACGATCGCCTTCTTTTATCCAACAGCATTATACCCGTCTCT
TCGTCCGCCTCCAGACACTCCTCCTCTATCTCTCTCCTCCCTCTTCCACC
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protein sequence of NO09G02650.1

>NO09G02650.1-protein ID=NO09G02650.1-protein|Name=NO09G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPFPCPSFPSAGCRPHTCAPIQRIIRDSGMGMTASTARIFNPSPSLSRTM
VQLPSSARPTLPPPPPTATMSLPVRKRHAWPLLRQSWISWPLLPPLIALL
FPTTAEARRASITAFYSVPVALPSRRFASQQSILRKSHSLLPISLSPSRV
LSAPVQIQRPPCSLQPFTPAATRAPLQSQSRHNQRPSPPKRQRIIAWARR
LRWQRKQRKFDSCTFDDFDRTTLPEPEAARKKLLASLLVGAGASGTLLLS
ILLRTMPLGKRAIFSAAPLAGTLLPYFLCLARGLPLASVGRWHNVSAIGH
RLGGVGALVLPLVLVVQEAMTSSHVSVLLYTSTILAIFSNLLFGVALIPT
RFPGYDIPAARGLAVGTLYGLSFLGWSLTFRFGAYGWYGPIGKLFAIIAV
YAVVFSWSDAGQNMYFWWKGKYKTELGRKWFLPFEPSLFRQVFGSNLWRQ
PRADALQASLMTAWQGSLPTIFVALLGSASLLQLPYLLWGPASMQQLVNS
YPGLARWATYQALLAVAANNFATFLVTLVVHNRLPLGHVAFYNVCVPLIP
LLNIAAFCWRYPGVSLSLIVRLLVRAPGREIVAGVPPALLS*
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Synonyms
Publications