NO09G02600.1, NO09G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02600.1
Unique NameNO09G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length738
Alignment locationchr9:779506..780243 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:779506..780243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02600.1 vs.
Match: EWM27565.1 (atp-dependent zinc metalloprotease ftsh mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 227.6 bits (579), Expect = 4.100e-56
Identity = 145/233 (62.23%), Postives = 161/233 (69.10%), Query Frame = 0 
Query:    5 SLLGSTIAGRLQVQLWGLAWRRLPHKARQVLAASPSFASTARDSSCNAFATLPRVTASSRSSARAALRQRASVSSPSTPLTSSSRSSSSSRSSSCPSIYGLTPQAPTSQLQQQRRGIIFRFMEHQKLKSLEMEANQASTDPNKQYRFLKELGKSYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPLQPLLQPLVATAAEGGG---AGREGAREGMMSSGQYGG 235
            S + + + GRLQ+QLWGLAWRRLP   RQ L ASPSF S  ++ S  AFA LPR+T+     ARA+LR R   S        SS  SSS RS      YGLT + P       RRGIIFRFMEHQKLKSLEMEANQ + D NKQYRFLKELGKSYPEAVI RYEGG    FAVNEGVTKEYLKALAKVGKLDSMPL+PLLQP+VA   EGGG   AG EG RE + ++   GG
Sbjct:    5 STVTTALNGRLQLQLWGLAWRRLPRHTRQCLEASPSFTSRPQERSFAAFAALPRLTS---PHARASLRSRPPAS------VVSSLPSSSLRSPFPGGAYGLTQRHP-------RRGIIFRFMEHQKLKSLEMEANQGAMDANKQYRFLKELGKSYPEAVITRYEGGR---FAVNEGVTKEYLKALAKVGKLDSMPLRPLLQPMVAGGTEGGGRVAAGVEGGREALGAAAGVGG 218
The following BLAST results are available for this feature:
BLAST of NO09G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27565.14.100e-5662.23atp-dependent zinc metalloprotease ftsh mitochondr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02600NO09G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02600.1NO09G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02600.1.cds1NO09G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02600.1 ID=NO09G02600.1|Name=NO09G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
ATGCCATCCTCCTCGCTGCTGGGCAGCACCATAGCGGGCCGTCTACAAGT
CCAGCTTTGGGGACTGGCATGGCGTCGGCTCCCTCATAAGGCCCGTCAAG
TTCTGGCAGCTTCCCCATCCTTTGCTTCCACCGCTCGAGACAGCTCTTGC
AACGCCTTCGCCACCCTGCCCCGCGTCACGGCTAGCAGCAGGAGCAGCGC
TCGTGCGGCGTTGCGTCAAAGGGCCTCTGTTTCCTCCCCCTCCACTCCCC
TCACCAGCAGTAGCAGAAGCAGCAGCAGCAGTAGAAGCAGTAGCTGTCCC
TCCATCTACGGCCTGACCCCTCAAGCCCCCACCTCCCAACTACAACAACA
ACGACGCGGCATCATCTTCCGTTTCATGGAACACCAAAAACTCAAATCTC
TGGAAATGGAAGCGAATCAAGCCTCCACTGATCCCAACAAACAATACCGC
TTTTTGAAGGAGCTAGGGAAATCCTACCCTGAAGCCGTCATCAACCGCTA
TGAAGGAGGAGCAGGAAAAGTTTTCGCGGTCAATGAGGGGGTGACCAAAG
AGTACTTGAAAGCGCTAGCGAAGGTAGGAAAACTAGATAGCATGCCACTC
CAGCCGTTGTTGCAACCGTTGGTGGCCACGGCGGCGGAAGGGGGGGGAGC
AGGGAGGGAGGGAGCCAGGGAGGGGATGATGAGTTCAGGCCAATATGGGG
GGGGGGGATGGGAATGCCTGCCGCCGGGGCGGCTTTAG
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protein sequence of NO09G02600.1

>NO09G02600.1-protein ID=NO09G02600.1-protein|Name=NO09G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPSSSLLGSTIAGRLQVQLWGLAWRRLPHKARQVLAASPSFASTARDSSC
NAFATLPRVTASSRSSARAALRQRASVSSPSTPLTSSSRSSSSSRSSSCP
SIYGLTPQAPTSQLQQQRRGIIFRFMEHQKLKSLEMEANQASTDPNKQYR
FLKELGKSYPEAVINRYEGGAGKVFAVNEGVTKEYLKALAKVGKLDSMPL
QPLLQPLVATAAEGGGAGREGAREGMMSSGQYGGGGWECLPPGRL*
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mRNA from alignment at chr9:779506..780243+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02600.1 ID=NO09G02600.1|Name=NO09G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=738bp|location=Sequence derived from alignment at chr9:779506..780243+ (Nannochloropsis oceanica)
ATGCCATCCTCCTCGCTGCTGGGCAGCACCATAGCGGGCCGTCTACAAGT
CCAGCTTTGGGGACTGGCATGGCGTCGGCTCCCTCATAAGGCCCGTCAAG
TTCTGGCAGCTTCCCCATCCTTTGCTTCCACCGCTCGAGACAGCTCTTGC
AACGCCTTCGCCACCCTGCCCCGCGTCACGGCTAGCAGCAGGAGCAGCGC
TCGTGCGGCGTTGCGTCAAAGGGCCTCTGTTTCCTCCCCCTCCACTCCCC
TCACCAGCAGTAGCAGAAGCAGCAGCAGCAGTAGAAGCAGTAGCTGTCCC
TCCATCTACGGCCTGACCCCTCAAGCCCCCACCTCCCAACTACAACAACA
ACGACGCGGCATCATCTTCCGTTTCATGGAACACCAAAAACTCAAATCTC
TGGAAATGGAAGCGAATCAAGCCTCCACTGATCCCAACAAACAATACCGC
TTTTTGAAGGAGCTAGGGAAATCCTACCCTGAAGCCGTCATCAACCGCTA
TGAAGGAGGAGCAGGAAAAGTTTTCGCGGTCAATGAGGGGGTGACCAAAG
AGTACTTGAAAGCGCTAGCGAAGGTAGGAAAACTAGATAGCATGCCACTC
CAGCCGTTGTTGCAACCGTTGGTGGCCACGGCGGCGGAAGGGGGGGGAGC
AGGGAGGGAGGGAGCCAGGGAGGGGATGATGAGTTCAGGCCAATATGGGG
GGGGGGGATGGGAATGCCTGCCGCCGGGGCGGCTTTAG
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Coding sequence (CDS) from alignment at chr9:779506..780243+

>NO09G02600.1 ID=NO09G02600.1|Name=NO09G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr9:779506..780243+ (Nannochloropsis oceanica)
ATGCCATCCTCCTCGCTGCTGGGCAGCACCATAGCGGGCCGTCTACAAGT
CCAGCTTTGGGGACTGGCATGGCGTCGGCTCCCTCATAAGGCCCGTCAAG
TTCTGGCAGCTTCCCCATCCTTTGCTTCCACCGCTCGAGACAGCTCTTGC
AACGCCTTCGCCACCCTGCCCCGCGTCACGGCTAGCAGCAGGAGCAGCGC
TCGTGCGGCGTTGCGTCAAAGGGCCTCTGTTTCCTCCCCCTCCACTCCCC
TCACCAGCAGTAGCAGAAGCAGCAGCAGCAGTAGAAGCAGTAGCTGTCCC
TCCATCTACGGCCTGACCCCTCAAGCCCCCACCTCCCAACTACAACAACA
ACGACGCGGCATCATCTTCCGTTTCATGGAACACCAAAAACTCAAATCTC
TGGAAATGGAAGCGAATCAAGCCTCCACTGATCCCAACAAACAATACCGC
TTTTTGAAGGAGCTAGGGAAATCCTACCCTGAAGCCGTCATCAACCGCTA
TGAAGGAGGAGCAGGAAAAGTTTTCGCGGTCAATGAGGGGGTGACCAAAG
AGTACTTGAAAGCGCTAGCGAAGGTAGGAAAACTAGATAGCATGCCACTC
CAGCCGTTGTTGCAACCGTTGGTGGCCACGGCGGCGGAAGGGGGGGGAGC
AGGGAGGGAGGGAGCCAGGGAGGGGATGATGAGTTCAGGCCAATATGGGG
GGGGGGGATGGGAATGCCTGCCGCCGGGGCGGCTTTAG
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Synonyms
Publications