NO09G02490, NO09G02490 (gene) Nannochloropsis oceanica

Overview
NameNO09G02490
Unique NameNO09G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2785
Alignment locationchr9:743973..746757 +

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Properties
Property NameValue
DescriptionTwo-component response regulator arr12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:743973..746757 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: EWM27574.1 (two-component response regulator arr12 [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 1.500e-47
Identity = 127/178 (71.35%), Postives = 139/178 (78.09%), Query Frame = 0 
Query:   75 ARKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNSMGGGDGRGGLESRAGDEDAFRGQMNLIRDCIQMQTGFQSVLXXXXXXXXXXXXXXXXXXXXLGFDGPAA 253
            A+KRFVWPDDLHRDFVAAIFDVGLKCASPKTI+EMM+NTK+LTPDHIKSHLQKYRLHRERAREEFLQHFGKNPF +                              L+S+ G  GR  ++ + GDEDAFRGQ+NLIRDCIQMQ GFQSVLXXXXXXXXXXXXXXXXXXXXLGFDGP+A
Sbjct:   54 AKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFVA-----GAAGTGLVCAKGEAGGVSRDGSASSLDSVNGIGGRAEMDHQ-GDEDAFRGQLNLIRDCIQMQAGFQSVLXXXXXXXXXXXXXXXXXXXXLGFDGPSA 225
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: CBJ29351.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.0 bits (245), Expect = 4.700e-17
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0 
Query:   79 FVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHF 144
            FVW   LH+DFVAA+FDVGLKCASPK +LEMM     LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct:  134 FVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 198
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: OEU21412.1 (hypothetical protein FRACYDRAFT_235035 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.7 bits (234), Expect = 8.800e-16
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHF 144
            KRF WP+DLHRDFV+AIFDVGLK +SP TILE M+  + +T + IKSHLQKYRLHR ++++EF+  +
Sbjct:  287 KRFTWPEDLHRDFVSAIFDVGLKHSSPATILEHMSKHEQITTERIKSHLQKYRLHRVKSKKEFISSY 353
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: XP_002181659.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46873.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 94.0 bits (232), Expect = 1.500e-15
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFL 141
            KRF WP+DLHRDFV+AIFDVGLK +SP TILE M    D+T + IKSHLQKYRLHR +++++F+
Sbjct:  220 KRFTWPEDLHRDFVSAIFDVGLKQSSPSTILETMPKHADVTSERIKSHLQKYRLHRIKSKQDFM 283
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: XP_024576232.1 (Myb domain, plants [Plasmopara halstedii] >CEG39863.1 Myb domain, plants [Plasmopara halstedii])

HSP 1 Score: 94.0 bits (232), Expect = 1.500e-15
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTK---DLTPDHIKSHLQKYRLHRERAREEFLQHFGKN 147
            KRFVWPDDLHR FVAAIFDVGLK ASPKT+L +M   +    LT +H+KSHLQK+RL+ ER+R EFL+++ ++
Sbjct:   96 KRFVWPDDLHRLFVAAIFDVGLKNASPKTLLTLMEPVEPDAGLTTEHLKSHLQKFRLNYERSRIEFLEYYDRS 168
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: XP_009530738.1 (hypothetical protein PHYSODRAFT_316642 [Phytophthora sojae] >EGZ13309.1 hypothetical protein PHYSODRAFT_316642 [Phytophthora sojae])

HSP 1 Score: 93.2 bits (230), Expect = 2.600e-15
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMM---NNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKN 147
            KRF+WPDDLHR FVAAIFDVGLK ASPK +L +M        LT +H+KSHLQKYRL+ ER+R EFL+++ ++
Sbjct:  101 KRFIWPDDLHRLFVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYDRS 173
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: EJK75998.1 (hypothetical protein THAOC_02259 [Thalassiosira oceanica])

HSP 1 Score: 93.2 bits (230), Expect = 2.600e-15
Identity = 40/67 (59.70%), Postives = 55/67 (82.09%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHF 144
            KRF WP++LHR+FV+AIFDVG+K ASP T++E M    +LT + +KSHLQKYRL+R ++R+EFL+ F
Sbjct:  141 KRFTWPEELHREFVSAIFDVGMKNASPSTVMEFMRPNPELTSERVKSHLQKYRLNRVKSRKEFLESF 207
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: ETI42443.1 (hypothetical protein F443_12441 [Phytophthora parasitica P1569] >ETK82461.1 hypothetical protein L915_12166 [Phytophthora parasitica] >ETL35845.1 hypothetical protein L916_12091 [Phytophthora parasitica] >ETM42340.1 hypothetical protein L914_11999 [Phytophthora parasitica] >ETP12157.1 hypothetical protein F441_12427 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 93.2 bits (230), Expect = 2.600e-15
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMM---NNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKN 147
            KRF+WPDDLHR FVAAIFDVGLK ASPK +L +M        LT +H+KSHLQKYRL+ ER+R EFL+++ ++
Sbjct:  104 KRFIWPDDLHRLFVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYDRS 176
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: ETL89085.1 (hypothetical protein L917_11926 [Phytophthora parasitica])

HSP 1 Score: 93.2 bits (230), Expect = 2.600e-15
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMM---NNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKN 147
            KRF+WPDDLHR FVAAIFDVGLK ASPK +L +M        LT +H+KSHLQKYRL+ ER+R EFL+++ ++
Sbjct:  104 KRFIWPDDLHRLFVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYDRS 176
[Close]
BLAST of NO09G02490 vs. NCBI_GenBank
Match: XP_008908777.1 (hypothetical protein PPTG_14034 [Phytophthora parasitica INRA-310] >ETN06275.1 hypothetical protein PPTG_14034 [Phytophthora parasitica INRA-310])

HSP 1 Score: 93.2 bits (230), Expect = 2.600e-15
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0 
Query:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMM---NNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKN 147
            KRF+WPDDLHR FVAAIFDVGLK ASPK +L +M        LT +H+KSHLQKYRL+ ER+R EFL+++ ++
Sbjct:  104 KRFIWPDDLHRLFVAAIFDVGLKNASPKALLALMEAAGPNSGLTTEHLKSHLQKYRLNYERSRMEFLEYYDRS 176
The following BLAST results are available for this feature:
BLAST of NO09G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27574.11.500e-4771.35two-component response regulator arr12 [Nannochlor... [more]
CBJ29351.14.700e-1770.77conserved unknown protein [Ectocarpus siliculosus][more]
OEU21412.18.800e-1662.69hypothetical protein FRACYDRAFT_235035 [Fragilario... [more]
XP_002181659.11.500e-1565.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_024576232.11.500e-1563.01Myb domain, plants [Plasmopara halstedii] >CEG3986... [more]
XP_009530738.12.600e-1561.64hypothetical protein PHYSODRAFT_316642 [Phytophtho... [more]
EJK75998.12.600e-1559.70hypothetical protein THAOC_02259 [Thalassiosira oc... [more]
ETI42443.12.600e-1561.64hypothetical protein F443_12441 [Phytophthora para... [more]
ETL89085.12.600e-1561.64hypothetical protein L917_11926 [Phytophthora para... [more]
XP_008908777.12.600e-1561.64hypothetical protein PPTG_14034 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL122nonsL122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR129ngnoR129Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010778NSK010778Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02490.1NO09G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|20473gene_4298Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100015g18gene3018Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02490.1NO09G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02490 ID=NO09G02490|Name=NO09G02490|organism=Nannochloropsis oceanica|type=gene|length=2785bp
AGATCGCCGCAACCCAAACCCGCTGCTGACCCGACCAAGGTGCAGAGAGG
CGTGGTAGAGATGCAGGCCGCGAGTAGTCGGGCAAGCCACTTCATCACCC
TATTTTGACAGCGTCTTTCACCGTCCTTGGACCACAGGCGGTCACTCTGC
AGCGGGAGGTAATTCCGAACCCAAGATAGCCACAAGTATCGCAGGCTTGT
CCTCGCGGAGTGATCCTTTGAGTGGAAGTAGAGgtacgtgcgtgctctgg
gtaggggatggggcataccggtcaacttggcaagttgttagaagagaggg
tatcgggtttgtggcatatatatggttatggtatcatccagattgacgtc
ccatttttgtgccgtggctactatttgaatctaggctccacattgggaga
aaatgcgtttgttgcaaggcacttgcgactactttctatcccgctagtgt
ctgccagtgtgctgtgtgctgttttaattctgcgtgggacacctcatctg
gagtatttttcacgcaaagcaatcatctatgccctccccccccctccccc
ctctttttcgcgacagCAAACAACGACGGAAAGGACATTTCCCTCCCTTG
ACGCGGCAGGGGATGGACGATTCGATGGCCGGCGGCAACAAACGGCGACG
GCATCCCTCCTCATCCTCCTCCTCGTCCTCCTCTCGACAGCTACAAACCC
TCCATTATCCACCACCAGACCCTAGCGGTGGCGGCGGTGGGGGAGAGGGA
AGCGCGGGTCCTAACCATTACCACCAACGGGCCTCGGAAACTGCCTCGGT
GACAAGTGAGAGCAGCATCAATAACAACAGCAAGGCCAGAAAACGTTTCG
TTTGGCCCGATGACCTGCATCGTGACTTCGTTGCTGCCATTTTCGATGTG
GGCTTAAAATGCGCTTCTCCGAAAACAATATTAGAAATGATGAACAACAC
CAAGGACTTGACGCCCGATCACATAAAAAGTCACTTGCAGAAATACCGTT
TGCACAGGGAGAGGGCCCGGGAGGAATTTTTGCAGCATTTTGGGAAGAAC
CCTTTTGCATCTGGTGGGGGTGGAGGAGGTGGCGTCACATTGGCGTGTAT
GAGGGGAAGAGAAGATGAAGGAGGGATGTCAAGGGATGACTCTGCATCAA
GCTTGAACAGTATGGGTGGTGGAGATGGAAGAGGAGGGCTGGAGAGTAGG
GCGGGGGATGAGGATGCGTTTAGAGGACAGATGAATTTGATTCGCGATTG
CATTCAGATGCAAACTGGGTTTCAGTCTGTGCTCCGGCAAGCTCTCATGC
AGCAGACACAGCTCCAGCAGCAGTTGCAGGCACACTTACAAGCATTGGGT
TTCGATGGGCCGGCAGCGCGAGCAGCAGCAGCTGCAGCGGCACTAGGAGG
AACGGGAAGTCCTTCTGGGCCTTCAGCCGCGCCAGTGGAGGGTAAGGGGG
GGAGAAGCAGCAATGAGCACCACATGTACCAGCAGCAGCCGCAGCAGCAG
GCGGCGCACACGCTCATGCCCATGCGCGGTCAGCAGTCACCCATACGCGG
CCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTACAGCTTCCGCCAGAAG
GCCGTCGGCCCCTGCCAGGTGTCCGTTCCAGTGGACGAGGAGGAGGAGGG
GGGGTTGTCGCGGGGGGAGGAAAACGGTCTGCAGAGGAGCTGATGCAGGA
AGAAATGAGGGAACACATGGACATGCACCGCCAGTTGGTGCTGAGAAAAA
ATGCTCAAATATCTCAGTATGAAGATGGGGCGAAGAGAGCTGCAGCAGCA
GTGGCAGCAGGAGGTTTGCATGGTTTAGTAGGAGGAGGAGGAGCGTCAGG
AGTGGGGATACCGTCTTCGTCGACAGGTGGTGGTGACAGAGGAGGAGGAG
GTGGAGGAGAAGGGAAAGCAACTGTGTCCTCTCCAGGCATATCGGAGCAC
GCGGCGATGGCACAGCATCAATCTGGGGGAGGTGGTGTAGGAAGTGTTGG
CTTGCACGCTCAGGTGGCGGCAGCAACGACAGGGATGGGGGGAGGAGTAG
GAGGAGGAGGCGGGGGGGCAGGGCACCCAGCAGGATTAGATCTTGACGTG
GATTTGTCCTCGTTTAGGTGGAATGAAGATGAAGACAACTTATTTAGTTT
TTTGATGGACAATCCCGTAGGCTAGGGAGGGAGGAAGGGAGGGTAGGGAA
AGGGAGGGGAAGAGAGAAGGTTTTATACAATGGATAGGGGGGAAGGGAGA
ATACGGAAAGGGAGGGGAAGGGGGAAGAATTTATAGAATGGATATGCGAT
TTAAAAGATAAAGCGAAGAGATCGACTTCGACCACCATAGGAGAGAGGGA
GGGAGGGAGGAAGACAAGAGACTGTTTCGTGGTGCGGATCAAAGGCGAGG
GCAAGAGCGAGTACAGATATAAACCATCAGATGGTCTTATAGTTCTATCT
CCACCGCGTCAACACATTGAGTTAAGCCGCCGTATGCGAACTGAAGCTCC
CACCGCAGAATCGAAATGGAAGCCATAGCACAAAGCCACGATGACTCCAC
GCATTGATTTTACCCGATAACCACCTCCACAACAAGATCAAGGCATGAAA
ATTCAAGTCATAAACCTAAATATCGGCCACCAGTTTGTCAAACAGAACAT
CACTGTTGCGTGCCGCTGATTAGGAGGGCGTAGACACTGTGGACCCCACG
ACTATCACAAAATCATTTCCTTTCTTGGAGTAAATATGTTCAAAAATTCA
AAAAAGCAAAAACAACAAGCAGGCATACAGCAGTA
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protein sequence of NO09G02490.1

>NO09G02490.1-protein ID=NO09G02490.1-protein|Name=NO09G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MDDSMAGGNKRRRHPSSSSSSSSSRQLQTLHYPPPDPSGGGGGGEGSAGP
NHYHQRASETASVTSESSINNNSKARKRFVWPDDLHRDFVAAIFDVGLKC
ASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFAS
GGGGGGGVTLACMRGREDEGGMSRDDSASSLNSMGGGDGRGGLESRAGDE
DAFRGQMNLIRDCIQMQTGFQSVLRQALMQQTQLQQQLQAHLQALGFDGP
AARAAAAAAALGGTGSPSGPSAAPVEGKGGRSSNEHHMYQQQPQQQAAHT
LMPMRGQQSPIRGQQQQQQQQQHLQLPPEGRRPLPGVRSSGRGGGGGVVA
GGGKRSAEELMQEEMREHMDMHRQLVLRKNAQISQYEDGAKRAAAAVAAG
GLHGLVGGGGASGVGIPSSSTGGGDRGGGGGGEGKATVSSPGISEHAAMA
QHQSGGGGVGSVGLHAQVAAATTGMGGGVGGGGGGAGHPAGLDLDVDLSS
FRWNEDEDNLFSFLMDNPVG*
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Synonyms
Publications