NO09G01770, NO09G01770 (gene) Nannochloropsis oceanica

Overview
NameNO09G01770
Unique NameNO09G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2607
Alignment locationchr9:550002..552608 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna repair protein rad51
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:550002..552608 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Homology
[Close]
BLAST of NO09G01770 vs. NCBI_GenBank
Match: XP_005853611.1 (dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526] >EKU22750.1 dna repair protein rad51, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 187.6 bits (475), Expect = 1.400e-43
Identity = 165/488 (33.81%), Postives = 226/488 (46.31%), Query Frame = 0 
Query:   10 DALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQESIPTPSMLHSSTSDEPLASATT---LQKKHQFPQRALSKVLRRKLLVDVDTLRAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALLHFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQTFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDAPAVYDKQGXXXXXXXXXXXXXXXXXXXXTTLGRHSSHPTHLLDTSFDRFLATAFLAPFRASHPQALLALYTALECEELLPADLL---AAGAAADGPN---KGPLDDILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQ---ERAERSTRQSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSSSTVLQQALTDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQ 486
            DALC  LR + ++ALQ+GG RL+DA T+D R ++G +L ++    +PS   SS   + +        +  +       L K L+ K+LVD+  L+  YA            V  ++    ++ R   L      +RELQLQA+L F +GTMGL+  ++ ++S    SC      L  SLL+ VH FLA LQLRQTF+LG  G R   R   G  L   +     +   G  +   T   +           G                         H    T +LD++F  FLA AFL PFRASHPQ +LALYT+LECEELL AD L   AAGAAA       KG              +   + PVF R L R+ AA SGF+SAY  R +   +R + +     G ++++ +   P+R                             QQA+ +S R  PSHY++RINSF KP  LSRRP L   QQ
Sbjct:  226 DALCQVLRGMMSEALQEGGQRLVDAATQDFRALIGDYLGTEAVYVSPS--QSSVGADLITGFDKNKYIATRRHLNLHRLRKALQDKILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSAS----SCIRP--PLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGF-RQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERPCPHASGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKG-------------VSPKPKGPVF-RCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSR--------------XXXXXXXXXXXXXXXQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQ 676
[Close]
BLAST of NO09G01770 vs. NCBI_GenBank
Match: EWM27612.1 (hypothetical protein Naga_100069g16 [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 1.200e-42
Identity = 164/488 (33.61%), Postives = 225/488 (46.11%), Query Frame = 0 
Query:   10 DALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQESIPTPSMLHSSTSDEPLA---SATTLQKKHQFPQRALSKVLRRKLLVDVDTLRAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALLHFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQTFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDAPAVYDKQGXXXXXXXXXXXXXXXXXXXXTTLGRHSSHPTHLLDTSFDRFLATAFLAPFRASHPQALLALYTALECEELLPADLL---AAGAAADGPN---KGPLDDILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQ---ERAERSTRQSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSSSTVLQQALTDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQ 486
            DALC  LR + ++ALQ+GG RL+DA T+D   ++G +L ++    +PS   SS   + +        +  +       L K L+  +LVD+  L+  YA            V  ++    ++ R   L      +RELQLQA+L F +GTMGL+  ++ ++S    SC      L  SLL+ VH FLA LQLRQTF+LG  G R   R   G  L   +     +   G  +   T   +     A     G                         H    T +LD++F  FLA AFL PFRASHPQ +LALYT+LECEELL AD L   AAGAAA       KG              +   + PVF R L R+ AA SGF+SAY  R +   +R + +     G ++++ +   P+R                             QQA+ +S R  PSHY++RINSF KP  LSRRP L   QQ
Sbjct:   14 DALCQVLRGMMSEALQEGGQRLVDAATQDFPALIGDYLGTEAVFVSPS--QSSVGADLITGFDKNKCIATRRHLNLHRLRKALQDNILVDIGALQEDYACGGTARGLWKFQVETTEKGLAVNRRKRSLPMDLLRIRELQLQAMLRFVMGTMGLLGTRRPSAS----SCIRP--PLPTSLLKDVHHFLAYLQLRQTFALGAEGMRGF-RQAGGDPLLHPNKGTPHNAPVGRGVSTETPDQDRRAERARPHTSGYCMGDMGGGAQEGLEQDVDGEEACPHGMQATRVLDSNFHEFLAAAFLKPFRASHPQDILALYTSLECEELLSADFLAEAAAGAAAATTRSVAKG-------------VSPKPKGPVF-RCLRRDKAAASGFVSAYNKRREVPVDRTKAAATMPVGPAKSMISGEAPSR--------------XXXXXXXXXXXXXXXQQAMRESLRPRPSHYLSRINSFHKPNQLSRRPLLSRQQQ 464
The following BLAST results are available for this feature:
BLAST of NO09G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853611.11.400e-4333.81dna repair protein rad51, partial [Nannochloropsis... [more]
EWM27612.11.200e-4233.61hypothetical protein Naga_100069g16 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010699NSK010699Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01770.1NO09G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588905gene_4374Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g16gene2954Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01770.1NO09G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01770 ID=NO09G01770|Name=NO09G01770|organism=Nannochloropsis oceanica|type=gene|length=2607bp
ACAGTTATCCTGGGCACGCACCCCGAAATCCCAGGGAAGTGGCGGTCCAT
TCCACACCCGAGAGGACTCTTCGTTTCCTCCATCATTCATGGCGTCTACC
GCGACCATGTCCCCCGACGCGCTTTGCGACACGCTCCGAGCGCTCACGGC
GCAAGCACTGCAACAAGGAGGACACCGCCTTATTGATGCCATCACGAAGG
ATCTCCGTAATATGGTTGGCCAGTTTCTTCAAAGCCAGGAGAGCATTCCC
ACCCCAAGCATGCTGCATTCTTCGACATCTGACGAGCCTCTGGCTTCCGC
CACCACTTTGCAGAAGAAGCATCAGTTCCCCCAGAGAGCCCTAAGCAAGG
TACTCCGGCGCAAGTTGTTGGTAGACGTGGACACGCTGCGAGCAGCCTAC
GCATCGAGTCGTGGAGGCATGGTCGGCAGTAGCAGTGGCGTCCCCTTCAG
TGACCCCTCTACTGTGTTGAGCGCCCGTGTTCCAGGTCTCTCATCACATA
CAGGATTGGTCCGGGAGCTGCAACTCCAGGCATTATTACATTTTTCGTTG
GGAACGATGGGCCTGATGCACGCGAAGCAAGATGCTTCCTCCTCCTCGCC
CTTGTCCTGTTCGTCTTCGACCCTCTCCCTCTCTCCCTCCTTGCTTAGAC
GCGTGCATCGTTTTTTAGCCGACCTACAGCTTCGACAAACCTTCTCACTC
GGTACTGGTGGTACCAGAGAATTACAGAGAGATGAGGATGGTTCCTTATT
GCAAAGGGCCAGCAACGTCGTCACTATCAGTCAGAGCAGCGGGAGCAGCA
TGATGGGAAGCACAGGTGTGGGCGAGGAGGAAGACGCTCCAGCTGTCTAC
GACAAACAGGGGGAGAAGACAGGCGAAAAGGAAGAGGGCCGGGAGGGGGG
AAACGAGAACGACACAGAAGCCACCACACTGGGTCGGCATTCGTCACATC
CCACCCACCTGCTCGACACGTCGTTCGACCGTTTCCTGGCAACGGCTTTT
CTGGCTCCCTTCCGCGCTTCCCACCCTCAGGCCTTGCTTGCCCTGTACAC
AGCCCTCGAATGCGAAGAACTCTTGCCTGCCGACCTATTGGCAGCAGGAG
CAGCAGCCGATGGCCCCAACAAGGGCCCGCTGGACGACATACTGCTGCTC
GAAGATCGAGACCAGACAGCCATTTCCAAGCGTCGCCCCGTTTTCCGTCG
GCTCCTCCATCGTGAAAACGCCGCAACCTCCGGCTTCATCTCCGCCTACG
CCACCCGCACCCAAGAACGTGCCGAGCGAAGCACCCGTCAATCTGCGGGA
GAATCTCAAGCACTCGAAAACGTTGTGGACCCCAACCGGAAACCCACCGG
CGGCGCTACTGGAACAGGAGCTAAACCACTACCCACCCAGCTTCCCATCC
CCCCCCTTTCGAGCAGTACGGTTCTGCAGCAGGCTCTCACAGACAGTCAA
CGGGCCCATCCCAGTCATTACATGACACGTATCAATAGCTTCCGGAAACC
CACAAACCTCTCTCGTCGTCCCTCCCTTCCTCTTGGCCAGCAGTACCACC
ACCACCACCAGCACCAGCACCGCCAAGAACAAGAACAAGAGCAGCAGCAA
ATGCATCCACAAACAGGGAATCAGCGTGCCACAGCCATGGCTTTGAAACA
AACGCGGTCCGCGGAACCTGAAGCAGCAACAACAAAAGGAGCAGCAAGAG
GGGTGCTTTCGTCCACCGCCACCACCTACCGTTCCTTCTCCTCCTCCTCT
TCTTCTTTCGCTTCCTCGTCTTCGACCTCCTCGTCGATCATTAAACGGGC
CCCCGTGGGTGGGTTAGAGAAAAAACGATGTCGACAAGGTCAGAATCATG
GCAATGGCAAGAGTGGAGAATGGAGGACGGACAAGAAGGAAAGCCTCGAT
GGAAGAGGGACAAAGAGAAGACAAGGAGGCGGAGGAAAAGGATATGTAGA
AGTGAGTGAAGGAGGCGGAAGACGAGAAAGCTCATCTGTAGTTCAGAAAT
TCACTCCCACGGTTTGTAGCGGACGCCCCAATTTTAGCAGCAGCAGCAGC
AGTGATAAGAACGACAGTACGAGCAGCAGGATGGGATCGGTAGATGCGAC
TATATTAGGAACTCCCCCGCCATCCTTGAGGAAGAAACGACCGGGAGGAG
GTGTAAGAGGAGACGGAAGGGGAGGAGGAGCTGTGGTTGCAGGAACACCA
GAGGCGGTGGGCAGAAATGTGCGGGCGAAGCGGACGACTGTTGCGGAGTC
GCCTCAAGGCTAGGGGGGGGGGAGAAGGAGGAGATGGAGGAGGAAGACGA
GGAGGAGAGAAGGAAGGGGGGGAAGGAGAACGACGAGGAGGACTATGGGG
AGGAGGAAGAAGAAGAAAGGGGATGGGGAAGAAAGGAGGAAGGGGAGGAG
GCCAGGTGCATGCCTACTGAAGCAGCGTTGGAGATGCAGATTCCACCTCA
GACAAGGAGTAGGATGTGATGCAATACGACCTCAGGGAAACATACAAGAG
GTGATGGCATATGACGATCAGAAGAGGTCAAAAGCATCAAAATGTCGACT
CCCGTATCCCGTAGTAATCTGGATGAAAAAGCAAATAAAAAAACCTTTAA
AAAGAAG
back to top

protein sequence of NO09G01770.1

>NO09G01770.1-protein ID=NO09G01770.1-protein|Name=NO09G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MASTATMSPDALCDTLRALTAQALQQGGHRLIDAITKDLRNMVGQFLQSQ
ESIPTPSMLHSSTSDEPLASATTLQKKHQFPQRALSKVLRRKLLVDVDTL
RAAYASSRGGMVGSSSGVPFSDPSTVLSARVPGLSSHTGLVRELQLQALL
HFSLGTMGLMHAKQDASSSSPLSCSSSTLSLSPSLLRRVHRFLADLQLRQ
TFSLGTGGTRELQRDEDGSLLQRASNVVTISQSSGSSMMGSTGVGEEEDA
PAVYDKQGEKTGEKEEGREGGNENDTEATTLGRHSSHPTHLLDTSFDRFL
ATAFLAPFRASHPQALLALYTALECEELLPADLLAAGAAADGPNKGPLDD
ILLLEDRDQTAISKRRPVFRRLLHRENAATSGFISAYATRTQERAERSTR
QSAGESQALENVVDPNRKPTGGATGTGAKPLPTQLPIPPLSSSTVLQQAL
TDSQRAHPSHYMTRINSFRKPTNLSRRPSLPLGQQYHHHHQHQHRQEQEQ
EQQQMHPQTGNQRATAMALKQTRSAEPEAATTKGAARGVLSSTATTYRSF
SSSSSSFASSSSTSSSIIKRAPVGGLEKKRCRQGQNHGNGKSGEWRTDKK
ESLDGRGTKRRQGGGGKGYVEVSEGGGRRESSSVVQKFTPTVCSGRPNFS
SSSSSDKNDSTSSRMGSVDATILGTPPPSLRKKRPGGGVRGDGRGGGAVV
AGTPEAVGRNVRAKRTTVAESPQG*
back to top
Synonyms
Publications