NO09G01420, NO09G01420 (gene) Nannochloropsis oceanica

Overview
NameNO09G01420
Unique NameNO09G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr9:457084..457671 -

Link to JBrowse

Properties
Property NameValue
Description40S ribosomal protein S26
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:457084..457671 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000892Ribosomal_S26e
Homology
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: EWM27637.1 (40s ribosomal protein s26 [Nannochloropsis gaditana])

HSP 1 Score: 174.5 bits (441), Expect = 1.800e-40
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 94
            MTVKRRNHGRNKKGRGHVKRVRCA+TGKAVPKDKAIKRM+VRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR
Sbjct:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: CBN75210.1 (40S ribosomal protein S26 [Ectocarpus siliculosus])

HSP 1 Score: 153.3 bits (386), Expect = 4.300e-34
Identity = 80/103 (77.67%), Postives = 88/103 (85.44%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPENKRP 104
            MTVKRRNHGRNKKGRGHV RVRCA+T KA+PKDKAIKR +VR+IVD SS RDI+EA VF+NY LPKLYIKQYY VEAAVHQR+VRSRS E RR R+ P   RP
Sbjct:    1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRRNRDPPVRHRP 103
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BLAST of NO09G01420 vs. NCBI_GenBank
Match: EJK48154.1 (hypothetical protein THAOC_33075 [Thalassiosira oceanica])

HSP 1 Score: 150.6 bits (379), Expect = 2.800e-33
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPENK 102
            MTVKRRNHGRNK GRGHVKRVRCA+TGKA+PKDKAIKR +VR+IVD SS RDIKEA  ++ YQLPKLY+K YY VEAAVHQR+VR RS+ DRR R  PE K
Sbjct:  138 MTVKRRNHGRNKHGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSRTDRRIRTPPERK 238
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: XP_009037351.1 (hypothetical protein AURANDRAFT_26663 [Aureococcus anophagefferens] >EGB07985.1 hypothetical protein AURANDRAFT_26663 [Aureococcus anophagefferens])

HSP 1 Score: 147.9 bits (372), Expect = 1.800e-32
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAP 99
            MTVKRR+HGRNKKGRGHV RVRCA+TGKA+PKDKAIKR +VR+IVD SS RDI++A  +E Y LPK+YIKQYY +EAAVHQR+VRSRS+ DRR R+ P
Sbjct:    1 MTVKRRSHGRNKKGRGHVNRVRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIRDASAYETYALPKIYIKQYYCIEAAVHQRIVRSRSRTDRRNRDPP 98
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: XP_002183830.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44499.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 146.4 bits (368), Expect = 5.200e-32
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAP 99
            MTVKRRNHGRNK GRGHVKRVRC +TGKA+PKDKAIKR +VR+IVD SS RDIKEA  ++ YQLPKLY+K YY VEAAVHQR+VR RS+E+RR R  P
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSRENRRIRTPP 98
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: XP_005774644.1 (hypothetical protein EMIHUDRAFT_450720, partial [Emiliania huxleyi CCMP1516] >EOD22215.1 hypothetical protein EMIHUDRAFT_450720, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 144.1 bits (362), Expect = 2.600e-31
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPENKRP 104
            MTVKRR HGRNKKGRGHV RVRC +TGKA+PKDKAIKR +VR+IV+ S+ RDI+E+   E YQLPK+YIKQ+YS+EAA+HQR+VR RS+E RR RE P+  RP
Sbjct:    1 MTVKRRCHGRNKKGRGHVNRVRCVSTGKAIPKDKAIKRFIVRNIVEASALRDIRESSCIEGYQLPKIYIKQFYSIEAAIHQRIVRVRSRELRRSREPPQRNRP 103
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: OEU10782.1 (ribosomal protein S26e [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 144.1 bits (362), Expect = 2.600e-31
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPENKRPGAR 107
            MTVKRRNHGRNK GRGHVKRVRC +TGKA+PKDKAIKR +VR+IVD SS RDIKEA  ++ YQLPKLY+K +Y VEAAVHQR+VR RSKE RR R  P   R GAR
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMFYCVEAAVHQRVVRGRSKEGRRVRTPP--PRFGAR 104
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: GAX28836.1 (small subunit ribosomal protein S26e [Fistulifera solaris] >GAX23923.1 small subunit ribosomal protein S26e [Fistulifera solaris])

HSP 1 Score: 144.1 bits (362), Expect = 2.600e-31
Identity = 77/106 (72.64%), Postives = 87/106 (82.08%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPENKRPGAR 107
            MTVKRRNHGRNK GRGHVKRVRC +TGKA+PKDKAIKR +VR+IVD SS RDIK+A  ++ YQLPKLY+K YY VEAAVHQR+VR RS+E RR R  P   R GAR
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKDASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSREQRRVRTPP--PRFGAR 104
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: OQS06765.1 (40S ribosomal protein S26 [Thraustotheca clavata])

HSP 1 Score: 142.9 bits (359), Expect = 5.800e-31
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPENKRP 104
            MTVKRRNHGRNKKGRGHVKRV C +T K +PKDKAIKR +VR++VD S+ RD+KEA V+E+Y LPK+YIK YYS+EAA+HQR+VR RS E RR RE P   RP
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVEGRRNREPPARFRP 103
[Close]
BLAST of NO09G01420 vs. NCBI_GenBank
Match: XP_008867530.1 (hypothetical protein H310_04804 [Aphanomyces invadans] >ETW03301.1 hypothetical protein H310_04804 [Aphanomyces invadans])

HSP 1 Score: 141.7 bits (356), Expect = 1.300e-30
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 0 
Query:    1 MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPENKRP 104
            MTVKRRNHGRNKK RGHVKRV C +T K +PKDKAIKR +VR+IVD S+ RD+KEA V+E Y LPK+YIK YYS+EAA+HQR+VR RS E RR RE P   RP
Sbjct:    1 MTVKRRNHGRNKKNRGHVKRVHCVSTAKLIPKDKAIKRFVVRNIVDASAMRDLKEASVYETYALPKIYIKNYYSIEAAIHQRIVRVRSAEGRRNREPPARIRP 103
The following BLAST results are available for this feature:
BLAST of NO09G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27637.11.800e-4097.8540s ribosomal protein s26 [Nannochloropsis gaditan... [more]
CBN75210.14.300e-3477.6740S ribosomal protein S26 [Ectocarpus siliculosus][more]
EJK48154.12.800e-3376.24hypothetical protein THAOC_33075 [Thalassiosira oc... [more]
XP_009037351.11.800e-3274.49hypothetical protein AURANDRAFT_26663 [Aureococcus... [more]
XP_002183830.15.200e-3275.51predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005774644.12.600e-3169.90hypothetical protein EMIHUDRAFT_450720, partial [E... [more]
OEU10782.12.600e-3173.58ribosomal protein S26e [Fragilariopsis cylindrus C... [more]
GAX28836.12.600e-3172.64small subunit ribosomal protein S26e [Fistulifera ... [more]
OQS06765.15.800e-3169.9040S ribosomal protein S26 [Thraustotheca clavata][more]
XP_008867530.11.300e-3069.90hypothetical protein H310_04804 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010632NSK010632Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01420.1NO09G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589024gene_4411Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100059g16gene2915Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01420.1NO09G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01420 ID=NO09G01420|Name=NO09G01420|organism=Nannochloropsis oceanica|type=gene|length=588bp
ATGACTGTCAAGCGCCGCAATCACGGGCGCAACAAGAAGGGCCGCGGCCA
CGTCAAGCGTGTGCGgtaagaaagagtgtgtgaaatgtggagtcgttggc
tggtctagcggatgggtggtcatggtcgtgagtccagcgtcgtgcttgcc
acaacggagcatggtcagcttgtgtcttttcctcagaaccggtggtacca
atgaccttgtgcgcgcgacgctgcctgcatctcacttagtcctgcagaaa
ggacggtacttctcccatcccgtgcttttgcaatgaacaaacccagcaat
ctcatgcactctccctcccgacccaaccccagGTGCGCCAACACCGGCAA
GGCCGTCCCCAAGGACAAGGCGATCAAGCGGATGTTAGTGCGCTCCATCG
TGGACCAGTCCTCTGCCCGTGATATCAAGGAGGCGCGTGTGTTCGAGAAC
TACCAACTGCCCAAGCTTTACATCAAGCAGTACTACTCCGTGGAGGCCGC
CGTGCATCAACGCCTCGTCCGTTCCCGCAGCAAGGAGGACCGACGAAAGC
GAGAAGCGCCTGAGAACAAGCGCCCCGGCGCTCGTTAA
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protein sequence of NO09G01420.1

>NO09G01420.1-protein ID=NO09G01420.1-protein|Name=NO09G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MTVKRRNHGRNKKGRGHVKRVRCANTGKAVPKDKAIKRMLVRSIVDQSSA
RDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRKREAPEN
KRPGAR*
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Synonyms
Publications