NO09G01380.1, NO09G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01380.1
Unique NameNO09G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1716
Alignment locationchr9:447800..449931 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:447800..449931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01380.1 vs.
Match: EWM27656.1 (ap-1 complex subunit mu-1-like isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 839.7 bits (2168), Expect = 4.000e-240
Identity = 419/434 (96.54%), Postives = 428/434 (98.62%), Query Frame = 0 
Query:    1 MVASALFIMDLKGKIIISRNFRGDIPQTVSERFAIYLQEKEESEQRPVFTEDGYTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIVGAIRMKSFLSGMPELKLGLNDKLMFEAAGRSVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWSIKQFHGQREYLMRAHFGLPSIAAEGSSTSAAEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVFMRMGT 435
            MVASALFIMDLKGKIIISRN+RGDIP TVSERFA YLQEKEESEQRP+FTE+G TFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEI+GAIRMKSFLSGMPELKLGLNDKLMFEA+GR+VSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVW IKQFHGQREYLMRAHFGLPSIAAEGSS +A EKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDV++RMGT
Sbjct:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMGT 434
The following BLAST results are available for this feature:
BLAST of NO09G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27656.14.000e-24096.54ap-1 complex subunit mu-1-like isoform 1 [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01380NO09G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01380.1NO09G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01380.1.cds1NO09G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01380.1.cds2NO09G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01380.1.cds3NO09G01380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01380.1 ID=NO09G01380.1|Name=NO09G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp
ACAGGCAAGGATCACCACTCGAAACAAAGGCTAACCCACCCGCGCCTCAA
GTCTCCGCGAACACCTGCCTCCTTCTCCTTCCGGACCCCTCGGCCGCCAC
AAGGAGCCCACCATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGG
GAAGATCATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCT
CGGAAAGATTCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGG
CCCGTCTTCACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAA
TCTCTTTCTTCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGC
TTGTCTACCTCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAG
TTGGAAGAAGAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAAT
GGACGAGACGATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTC
TGAGAGAGTACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGG
CCGCCGGTGGCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAA
ACATCGGAAGAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGT
TGGTGTCAGCGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATC
CGGATGAAGTCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAA
TGATAAGCTGATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGA
AAGGGAAGGCGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGG
CTGGCGCGCTTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGG
GGAGTTTGACCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGA
TATGGGTGGAGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTAT
ATGATCAAGGCCAAGAGTCAGTTTAAGTCCCGCTCCATCGCCAACAACGT
GGATATCATTATCCCCGTCCCCTCTGATGTGGACACGCCCTCCTTCAAAG
CCTCCATTGGCACCGTCACATACCTCCCCGACAAGGACGCCATCGTCTGG
AGCATCAAGCAATTCCACGGTCAACGTGAATATCTTATGCGCGCTCATTT
TGGTTTGCCTTCCATTGCCGCGGAAGGGTCCTCCACCAGTGCCGCGGAGA
AGTGTTGGAAGAAGCCGGTGCAGATTAAATTTGAGATTCCTTATTTTACC
GTTTCGGGTATCCAGGTTCGATACTTGAAGATTATAGAGAAGAGCGGTTT
TGCGGCTTTGCCTTGGGTGCGATATATAACTTGTGCGGGGGATGTTTTTA
TGCGCATGGGGACTTGAGATGTGGGGTGGAGGGTGGAAGGAGGAGAGGAG
GGGGTGGGTGTAGGAGTAGGTGTGGGGTTGGAGGAAATTGTGTGGAGAGG
GATGTTTGGAGCGAAAGAGGACTTGGTCGAAATGTACAACTAAGACGAAC
GAACGGAAGAGACAGTAACAGATGGGAAAAAAACGCATAATGAAGCTGGG
AGGTTTTTGCGGCATTGAAGATGATTCCGTTGAGACCGATTGAGACGTAT
CCCTAGTGTGAGACGATCTCTCGCTCCAGCTCTTACCCCTAGAAGAAGTA
AACGTTATGTGTCAAT
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protein sequence of NO09G01380.1

>NO09G01380.1-protein ID=NO09G01380.1-protein|Name=NO09G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MVASALFIMDLKGKIIISRNFRGDIPQTVSERFAIYLQEKEESEQRPVFT
EDGYTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEE
SIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVA
LTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIVGAIRMKS
FLSGMPELKLGLNDKLMFEAAGRSVSASTKGKAIELEDIKFHQCVRLARF
ENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKA
KSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWSIKQ
FHGQREYLMRAHFGLPSIAAEGSSTSAAEKCWKKPVQIKFEIPYFTVSGI
QVRYLKIIEKSGFAALPWVRYITCAGDVFMRMGT*
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mRNA from alignment at chr9:447800..449931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01380.1 ID=NO09G01380.1|Name=NO09G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp|location=Sequence derived from alignment at chr9:447800..449931- (Nannochloropsis oceanica)
ACAGGCAAGGATCACCACTCGAAACAAAGGCTAACCCACCCGCGCCTCAA
GTCTCCGCGAACACCTGCCTCCTTCTCCTTCCGGACCCCTCGGCCGCCAC
AAGGAGCCCACCATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGG
GAAGATCATCATCTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCT
CGGAAAGGTAAAGCGAGTAAGGGAGGGCAGGGTTGCTGCTTCTGCTGATG
ATTACGAGGGGGCAAGCGGGGCTGTGACATCCGTAGGGACAGCAAGAGGG
CGGCTCCTGCAGCGCTTGTTTTTGCTTTGTCTTTCACGGTCCGGAGCGAG
TTTTAGAGCGCCTGTCTTATGCCTCTGCGAGCTCTCCGTGCCCTTCCAGC
TCTCATCCACCCATCCTTCTTTCTCCCCTTACTCCCCCCGTCCCTTAGAT
TCGCCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCCCGTCTTC
ACAGAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATCTCTTTCT
TCTGAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTTGTCTACC
TCTCCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTTGGAAGAA
GAAAGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGGACGAGAC
GATGGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTGAGAGAGT
ACATCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCCGCCGGTG
GCGTTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAACATCGGAA
GAACGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTGGTGTCAG
CGAACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCGGATGAAG
TCCTTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATGATAAGCT
GATGTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAAGGGAAGG
CGATCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCTGGCGCGC
TTCGAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGGAGTTTGA
CCTGATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATATGGGTGG
AGGCGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATATGATCAAG
GTGAGGAAGAACGGAAGACGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GACGTGATGGTGAGAGTATGTTAAGATGGATTTCGTACCTTGAGTGTCTT
TGTCCACGGCGCCCATGACACGCAAACACACTTACACCATTTTCTTGTCT
TTTCCTTTCTCCAATCAATCCACAGGCCAAGAGTCAGTTTAAGTCCCGCT
CCATCGCCAACAACGTGGATATCATTATCCCCGTCCCCTCTGATGTGGAC
ACGCCCTCCTTCAAAGCCTCCATTGGCACCGTCACATACCTCCCCGACAA
GGACGCCATCGTCTGGAGCATCAAGCAATTCCACGGTCAACGTGAATATC
TTATGCGCGCTCATTTTGGTTTGCCTTCCATTGCCGCGGAAGGGTCCTCC
ACCAGTGCCGCGGAGAAGTGTTGGAAGAAGCCGGTGCAGATTAAATTTGA
GATTCCTTATTTTACCGTTTCGGGTATCCAGGTTCGATACTTGAAGATTA
TAGAGAAGAGCGGTTTTGCGGCTTTGCCTTGGGTGCGATATATAACTTGT
GCGGGGGATGTTTTTATGCGCATGGGGACTTGAGATGTGGGGTGGAGGGT
GGAAGGAGGAGAGGAGGGGGTGGGTGTAGGAGTAGGTGTGGGGTTGGAGG
AAATTGTGTGGAGAGGGATGTTTGGAGCGAAAGAGGACTTGGTCGAAATG
TACAACTAAGACGAACGAACGGAAGAGACAGTAACAGATGGGAAAAAAAC
GCATAATGAAGCTGGGAGGTTTTTGCGGCATTGAAGATGATTCCGTTGAG
ACCGATTGAGACGTATCCCTAGTGTGAGACGATCTCTCGCTCCAGCTCTT
ACCCCTAGAAGAAGTAAACGTTATGTGTCAAT
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Coding sequence (CDS) from alignment at chr9:447800..449931-

>NO09G01380.1 ID=NO09G01380.1|Name=NO09G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr9:447800..449931- (Nannochloropsis oceanica)
ATGGTGGCCTCGGCGCTTTTCATCATGGATCTCAAGGGGAAGATCATCAT
CTCCCGCAACTTCAGGGGTGATATCCCCCAGACTGTCTCGGAAAGATTCG
CCATATACCTCCAAGAAAAGGAAGAATCGGAGCAACGGCCCGTCTTCACA
GAAGACGGCTACACTTTTGCCTATCTCAAGTACAACAATCTCTTTCTTCT
GAGTGTGACCAAACGCAATTCCAACGTGGCTTTGATGCTTGTCTACCTCT
CCCGGTTGGTCGACGTGTTCAAAGAGTATTTTGGGGAGTTGGAAGAAGAA
AGCATCCGTGACAACTTTGTCATTATTTATGAGTTAATGGACGAGACGAT
GGACTTTGGCTATCCCCAGACAACGGAGGCGAAGATTCTGAGAGAGTACA
TCACTCAAGAAGGGAATAGGCTGGAAGCCGCCCCACGGCCGCCGGTGGCG
TTGACCAACACGGTGTCATGGCGCTCAGAAGGGATCAAACATCGGAAGAA
CGAGATCTTCTTGGACGTCATCGAAAAATTGAACTTGTTGGTGTCAGCGA
ACGGGACCGTGTTGCACTCGGAGATTGTTGGGGCGATCCGGATGAAGTCC
TTCTTGAGTGGCATGCCCGAGTTGAAGCTGGGTTTGAATGATAAGCTGAT
GTTCGAGGCGGCCGGGCGGTCGGTCTCGGCCTCGACGAAAGGGAAGGCGA
TCGAGCTGGAGGACATCAAGTTTCATCAATGTGTCAGGCTGGCGCGCTTC
GAGAACGATCGAACCATTTCCTTCATCCCGCCGGATGGGGAGTTTGACCT
GATGACCTACCGCTTGTCGACGCAGGTGAAGCCCTTGATATGGGTGGAGG
CGGTAGTGGAGCCTCATTCTCACTCTAGAATCGAGTATATGATCAAGGCC
AAGAGTCAGTTTAAGTCCCGCTCCATCGCCAACAACGTGGATATCATTAT
CCCCGTCCCCTCTGATGTGGACACGCCCTCCTTCAAAGCCTCCATTGGCA
CCGTCACATACCTCCCCGACAAGGACGCCATCGTCTGGAGCATCAAGCAA
TTCCACGGTCAACGTGAATATCTTATGCGCGCTCATTTTGGTTTGCCTTC
CATTGCCGCGGAAGGGTCCTCCACCAGTGCCGCGGAGAAGTGTTGGAAGA
AGCCGGTGCAGATTAAATTTGAGATTCCTTATTTTACCGTTTCGGGTATC
CAGGTTCGATACTTGAAGATTATAGAGAAGAGCGGTTTTGCGGCTTTGCC
TTGGGTGCGATATATAACTTGTGCGGGGGATGTTTTTATGCGCATGGGGA
CTTGA
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Synonyms
Publications