NO09G00670, NO09G00670 (gene) Nannochloropsis oceanica

Overview
NameNO09G00670
Unique NameNO09G00670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr9:245509..246747 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:245509..246747 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G00670 vs. NCBI_GenBank
Match: EWM27717.1 (hypothetical protein Naga_100034g23 [Nannochloropsis gaditana])

HSP 1 Score: 360.1 bits (923), Expect = 8.900e-96
Identity = 184/350 (52.57%), Postives = 237/350 (67.71%), Query Frame = 0 
Query:    1 MGDLEATIKGIGVSGTLVYVAMLLYITWRTCFLLFLQPPPATASRQQQLTLPAKKSFHVALFFSALLDLSYYAKLCTGAITSTSFSLHLMALWAELTAFSCVVVVWSRVLNAAKEKDSVLTYVIALDGFVLVWTLVVICLVIVAKDNVDQWVSPSSQPYIFFYLVQALALLSCCLALLYHGIRLQYIVRNHPRWEPLRRERRMRIVLRINAVLSVCTFCFLLRVVLLMAHFIQAEAHQQARFLDPAALVNWYVWCNWVPMCIPASILLFMMKNNPGRERGNI-GGATDGGGGLTLGLAAQXXXXXXXXXXXTVGILREWEERLVSLNSSGNTSINRNYWRPNSASLYSPP 350
            M DL ATI+GIG++GT ++  ML  I+WR C   FLQ     A      T  AK  FH+ LF +ALLDL YY  L    +++  +S HLMA WAEL AFS +V++W+R+LNA + KDSV+TYV+ALD F L++TL+VICL IV + N DQWV+ S+QP++FF+ VQA+AL +CCLALLYHGI LQY+VRNHPRW+P+RRERR+R VLRIN  L  CT CFLLRVVLL+A FIQAE+HQQARF DPA L+NWY+WCNWVP C+PA  LL+ + N  G+ R NI GG      G  + + +                LR+WEE L+S   +  + +N+  W  N+   Y PP
Sbjct:    1 MEDLGATIQGIGITGTFLFAVMLAIISWRICVFYFLQ-DTQHAPLPTSTTFTAKLCFHIFLFMAALLDLCYYIPLSRELVSAGFYSAHLMAQWAELAAFSMIVILWARLLNAPRGKDSVVTYVVALDAFTLIYTLIVICLAIVVQQNGDQWVTSSNQPFVFFFFVQAVALFACCLALLYHGISLQYLVRNHPRWDPIRRERRLRTVLRINITLMACTVCFLLRVVLLLARFIQAESHQQARFSDPATLINWYIWCNWVPDCLPACFLLYTVGNGGGQARRNIDGGVPTSKNGSKMAMTSNTRAGALN------SYLRDWEEPLISPFETYKSVVNQKIWHSNAMDHYIPP 343
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BLAST of NO09G00670 vs. NCBI_GenBank
Match: CBN74510.1 (hypothetical protein Esi_0028_0136 [Ectocarpus siliculosus])

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-16
Identity = 87/280 (31.07%), Postives = 126/280 (45.00%), Query Frame = 0 
Query:   39 PPATASRQQQLTLPAKKSFHVALFFSALLDLSYYA-KLCTGAITSTSFSLHLMALWAELTAFSCVVVVWSRVLN--------------------------------AAKEKDSVLT-YVIALDGFVLVWTLVVICLVIVAKDNVDQW---VSPSSQPYIFFYLVQALALLSCCLALLYHGIRLQYIVRNHPRWEPLRRERRMRIVLRINAVLSVCTFCFLLRVVLLMAHFIQAEAHQQARFLDPAALVNWYVWCNWVPMCIPASILLFMM--KNNPGRER 280
            P  T  R    T   K +FHV +  SALL++ +YA +L       + ++ HL+ LW  L +FS V+V+WS  L+                                  K + S+   +V A+D  V + T+VV+            W   V   S+PY+   +  ++ L      L+ +GIRLQ  V  HPRWEPL R +R++I+ RIN VL VC  CFL+RV +L +       H   R  D   L+ + V   WV   IP   LL +M     PG +R
Sbjct:   28 PFLTDRRSLSSTDRIKLAFHVCINTSALLEIVHYAIELAFRGSVLSGYACHLVGLWLSLVSFSLVIVLWSNTLHXXXXXXXXXXXXXXXXXXXXXXXXXXXAGWRCCGKTRISIAAKFVCAIDAIVALATVVVL------------WTGSVPAYSRPYLILMVTHSVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLVRVAVLSSALFVRSRH---RAEDMNRLL-FEVLARWVSGLIPGVALLHIMCKTKKPGEDR 291
The following BLAST results are available for this feature:
BLAST of NO09G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27717.18.900e-9652.57hypothetical protein Naga_100034g23 [Nannochlorops... [more]
CBN74510.11.400e-1631.07hypothetical protein Esi_0028_0136 [Ectocarpus sil... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010532NSK010532Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00670.1NO09G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589299gene_4491Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100034g23gene2837Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00670.1NO09G00670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00670 ID=NO09G00670|Name=NO09G00670|organism=Nannochloropsis oceanica|type=gene|length=1239bp
ATGGGAGACCTGGAAGCAACCATCAAGGGCATTGGTGTCTCAGGCACTTT
GGTGTATGTTGCTATGCTGCTCTACATCACGTGGCGGACATGCTTTCTCC
TCTTTCTCCAACCACCCCCAGCGACTGCCTCCAGACAACAGCAGCTAACC
TTGCCCGCCAAGAAAAGCTTCCATGTCGCCTTGTTCTTTTCAGCGTTGCT
CGACCTGAGTTATTACGCTAAACTATGTACAGGGGCGATTACTAGCACTT
CATTTTCGCTACACCTGATGGCGCTGTGGGCGGAGCTGACGGCTTTCAGT
TGCGTCGTCGTGGTCTGGTCCCGAGTGCTAAATGCGGCTAAAGAGAAAGA
CAGCGTCTTGACGTACGTGATCGCCCTCGATGGATTTGTCCTCGTGTGGA
CACTGGTGGTGATTTGCCTTGTGATTGTCGCCAAGGATAATGTCGATCAA
TGGGTCTCTCCAAGCAGTCAACCCTACATCTTTTTCTATCTAGTGCAAGC
TCTAGCCCTACTCTCCTGTTGCCTCGCCCTCCTATATCACGGCATCCGCC
TGCAGTACATCGTTAGGAATCACCCTCGTTGGGAGCCTCTGAGGAGGGAG
AGGCGGATGCGGATTGTGCTACGAATCAACGCTGTCCTCTCCGTGTGTAC
TTTCTGCTTCCTCTTGCGCGTTGTACTCTTAATGGCTCATTTTATCCAAG
CAGAAGCCCACCAACAAGCTCGTTTTCTGGACCCGGCCGCGTTAGTGAAT
TGGTATGTGTGGTGTAATTGGGTCCCAATGTGCATACCTGCTTCAATTCT
TCTCTTTATGATGAAAAACAATCCAGGGCGAGAACGAGGGAACATCGGGG
GTGCTACTGATGGTGGAGGAGGGTTGACTTTGGGATTGGCAGCCCAAGCA
GGAGGAGGGCAAGCAGGAGGAGGAGCTGAGACTGTAGGGATATTGCGTGA
GTGGGAAGAACGCTTGGTCTCCCTAAATTCCTCGGGAAACACATCGATAA
ATCGGAACTACTGGCGGCCGAACTCGGCGAGCTTGTACAGCCCCCCTTCT
CCGTCTGAGGTTGATGCTGTTGGTCCAATTTCGCCTGCGGCTGCTACTCC
GCTGACGCCTGCTACTGCGATCAGTTGTGGGCGGAGCAAGCCAGCGGCGG
TGTTGAATTTGGGGATGGAGCACAACGGGAGTAAGGAACAGGGTTCCGGA
TCAACGGAGGACGAGCCTTTGATTCTGGAGGCAGTATAA
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protein sequence of NO09G00670.1

>NO09G00670.1-protein ID=NO09G00670.1-protein|Name=NO09G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MGDLEATIKGIGVSGTLVYVAMLLYITWRTCFLLFLQPPPATASRQQQLT
LPAKKSFHVALFFSALLDLSYYAKLCTGAITSTSFSLHLMALWAELTAFS
CVVVVWSRVLNAAKEKDSVLTYVIALDGFVLVWTLVVICLVIVAKDNVDQ
WVSPSSQPYIFFYLVQALALLSCCLALLYHGIRLQYIVRNHPRWEPLRRE
RRMRIVLRINAVLSVCTFCFLLRVVLLMAHFIQAEAHQQARFLDPAALVN
WYVWCNWVPMCIPASILLFMMKNNPGRERGNIGGATDGGGGLTLGLAAQA
GGGQAGGGAETVGILREWEERLVSLNSSGNTSINRNYWRPNSASLYSPPS
PSEVDAVGPISPAAATPLTPATAISCGRSKPAAVLNLGMEHNGSKEQGSG
STEDEPLILEAV*
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Synonyms
Publications