NO09G00380, NO09G00380 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00380
Unique Name	NO09G00380
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2805
Alignment location	chr9:173800..176604 -

Link to JBrowse

Properties


Property Name	Value
Description	Splicing factor 3b subunit 2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:173800..176604 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR007180	DUF382
IPR006568	PSP

Homology

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BLAST of NO09G00380 vs. NCBI_GenBank
Match: EWM27761.1 (splicing factor 3b subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 526.2 bits (1354), Expect = 1.400e-145
Identity = 371/504 (73.61%), Postives = 395/504 (78.37%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLG--EGGTEXXXXXXXXGEEVNRKHWGEVXXXXXXXXXXXXXXXXXXXXXXXXYGGGMETPMTDGTGLSSVVSGLATPAEG-GIELRKKGXXXXXXXXXXXLYKVLE--------QKERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSIAINPDELVDQLGDEEALKERYEQEVEARQ 563
            VEI+YVSADLESEL+  GDDP L+EF+EIFKKFSTAEELCGT+                          XXXXXXXXXXXXXXXXXXXXXXXXX     VAELKQLVARPDVVEAHDVTSQDPQLLV +KAYRN+VPVPRHWCHKRKYLTGKRGIEKAPF+LP+F+KATGIQKQREAMEEKL LQT+RQKMRERVNPKMGRMDIDYA+LEDAFLRYQTKP LT HG+LYYEGKEFE  T+N+TPG LS  L+ AL IPPLYPPPWLMNMQRYGPPP+YPALRIPGLNAPLPEGAS+GMHPGGWGKPPVDEYGRPLYGDVFGVLG       XXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXX   G+ETP+T+ TGLSSVVSGL TP E  G+ELRK+            LYKVLE             XXXXXXXXXXXXXXXXXXX           VSIA+NPDEL DQLGDEEALKERYEQEVEARQ
Sbjct:   66 VEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTS-----VDDEKGVDEGGEGAGEKVSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKVLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRVGARGASDVSIALNPDELADQLGDEEALKERYEQEVEARQ 562

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BLAST of NO09G00380 vs. NCBI_GenBank
Match: XP_005852444.1 (splicing factor 3B subunit 2, partial [Nannochloropsis gaditana CCMP526] >EKU23389.1 splicing factor 3B subunit 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 469.9 bits (1208), Expect = 1.200e-128
Identity = 262/326 (80.37%), Postives = 280/326 (85.89%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEG 396
            VEI+YVSADLESEL+  GDDP L+EF+EIFKKFSTAEELCGT+                          XXXXXXXXXXXXXXXXXXXXXXXXX     VAELKQLVARPDVVEAHDVTSQDPQLLV +KAYRN+VPVPRHWCHKRKYLTGKRGIEKAPF+LP+F+KATGIQKQREAMEEKL LQT+RQKMRERVNPKMGRMDIDYA+LEDAFLRYQTKP LT HG+LYYEGKEFE  T+N+TPG LS  L+ AL IPPLYPPPWLMNMQRYGPPP+YPALRIPGLNAPLPEGAS+GMHPGGWGKPPVDEYGRPLYGDVFGVLG G
Sbjct:   69 VEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTS-----VDDEKGVDEGGEGAGEKVSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGG 387

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: XP_005854519.1 (splicing factor 3B subunit 2 [Nannochloropsis gaditana CCMP526] >EKU21846.1 splicing factor 3B subunit 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 460.7 bits (1184), Expect = 7.100e-126
Identity = 300/425 (70.59%), Postives = 324/425 (76.24%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEV-XXXXXXXXXXXXXXXXXXXXXXXXYGGGMETPMTDGTGLSSVVSGLATPAEG-GIELRKKGXXXXXXXXXXXLYK 493
            VEI+YVSADLESEL+  GDDP L+EF+EIFKKFSTAEELCGT+                          XXXXXXXXXXXXXXXXXXXXXXXXX     VAELKQLVARPDVVEAHDVTSQDPQLLV +KAYRN+VPVPRHWCHKRKYLTGKRGIEKAPF+LP+F+KATGIQKQREAMEEKL LQT+RQKMRERVNPKMGRMDIDYA+LEDAFLRYQTKP LT HG+LYYEGKEFE  T+N+TPG LS  L+ AL IPPLYPPPWLMNMQRYGPPP+YPALRIPGLNAPLPEGAS+GMHPGGWGKPPVDE                                 +HWG V  XXXXXXXXXXXXXXXXXXXXXXX   G+ETP+T+ TGLSSVVSGL TP E  G+ELRK+            LYK
Sbjct:   29 VEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTS-----VDDEKGVDEGGEGAGEKVSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDE---------------------------------RHWGGVEVXXXXXXXXXXXXXXXXXXXXXXXXXSGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYK 413

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: ETO64444.1 (hypothetical protein F444_17999 [Phytophthora parasitica P1976])

HSP 1 Score: 393.7 bits (1010), Expect = 1.100e-105
Identity = 278/437 (63.62%), Postives = 317/437 (72.54%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEVXXXXXXXXXXXXXXXXXXXXXXXXYGG--------GMETPMTDGTGLSSVVSGLATPAEGGIELRKKGXXXXXXXXXXXLYKVLEQKE 499
            VE+EYVSADL  EL+   +DP  +E   IF KFS+AEELCG  +             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RLSVAELKQLVA PDVVEAHDVTS DP+LLV++K+YRNTVPVPRHWCHKRKYL GKRG EK PF LPEFI  TGI + R+++ E    + ++Q+ RERV PKMGR+DIDY +L DAF R+QTKP LT  GD+YYEGKEFE   K+  PGQLS  L  AL +    PPPWL+N+QRYGPPP+YP L+IPGLNAP+PEGAS+G HPGGWGKPPVDE G PLYGDVFG   E   +        GEE+NR+ WGE+XXXXXXXXXXXXXXXXXXXXX     G        G+ETP+ D  G+SSV SGL TP  G ++LRK             LY VLEQKE
Sbjct:   54 VEVEYVSADLSKELALPQEDPAYEEMMRIFGKFSSAEELCGATDN-----------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKTTESEKQ--------GEEINRERWGELXXXXXXXXXXXXXXXXXXXXXAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTP--GVVDLRKGIRGTETPDVPQQLYTVLEQKE 467

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: XP_008896486.1 (hypothetical protein PPTG_04347 [Phytophthora parasitica INRA-310] >ETI35754.1 hypothetical protein F443_17974 [Phytophthora parasitica P1569] >ETK75975.1 hypothetical protein L915_17491 [Phytophthora parasitica] >ETL29423.1 hypothetical protein L916_17384 [Phytophthora parasitica] >ETL82652.1 hypothetical protein L917_17222 [Phytophthora parasitica] >ETN18882.1 hypothetical protein PPTG_04347 [Phytophthora parasitica INRA-310] >ETP05549.1 hypothetical protein F441_17842 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 393.3 bits (1009), Expect = 1.400e-105
Identity = 277/437 (63.39%), Postives = 317/437 (72.54%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEVXXXXXXXXXXXXXXXXXXXXXXXXYGG--------GMETPMTDGTGLSSVVSGLATPAEGGIELRKKGXXXXXXXXXXXLYKVLEQKE 499
            VE+EYVSADL  EL+   +DP  +E   +F KFS+AEELCG  +             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RLSVAELKQLVA PDVVEAHDVTS DP+LLV++K+YRNTVPVPRHWCHKRKYL GKRG EK PF LPEFI  TGI + R+++ E    + ++Q+ RERV PKMGR+DIDY +L DAF R+QTKP LT  GD+YYEGKEFE   K+  PGQLS  L  AL +    PPPWL+N+QRYGPPP+YP L+IPGLNAP+PEGAS+G HPGGWGKPPVDE G PLYGDVFG   E   +        GEE+NR+ WGE+XXXXXXXXXXXXXXXXXXXXX     G        G+ETP+ D  G+SSV SGL TP  G ++LRK             LY VLEQKE
Sbjct:   54 VEVEYVSADLSKELALPQEDPAYEEMMRVFGKFSSAEELCGATDN-----------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKTTESEKQ--------GEEINRERWGELXXXXXXXXXXXXXXXXXXXXXAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTP--GVVDLRKGIRGTETPDVPQQLYTVLEQKE 467

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: ETM35904.1 (hypothetical protein L914_17284 [Phytophthora parasitica])

HSP 1 Score: 393.3 bits (1009), Expect = 1.400e-105
Identity = 277/437 (63.39%), Postives = 317/437 (72.54%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEVXXXXXXXXXXXXXXXXXXXXXXXXYGG--------GMETPMTDGTGLSSVVSGLATPAEGGIELRKKGXXXXXXXXXXXLYKVLEQKE 499
            VE+EYVSADL  EL+   +DP  +E   +F KFS+AEELCG  +             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RLSVAELKQLVA PDVVEAHDVTS DP+LLV++K+YRNTVPVPRHWCHKRKYL GKRG EK PF LPEFI  TGI + R+++ E    + ++Q+ RERV PKMGR+DIDY +L DAF R+QTKP LT  GD+YYEGKEFE   K+  PGQLS  L  AL +    PPPWL+N+QRYGPPP+YP L+IPGLNAP+PEGAS+G HPGGWGKPPVDE G PLYGDVFG   E   +        GEE+NR+ WGE+XXXXXXXXXXXXXXXXXXXXX     G        G+ETP+ D  G+SSV SGL TP  G ++LRK             LY VLEQKE
Sbjct:   54 VEVEYVSADLSKELALPQEDPAYEEMMRVFGKFSSAEELCGATDN-----------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKTTESEKQ--------GEEINRERWGELXXXXXXXXXXXXXXXXXXXXXAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTP--GVVDLRKGIRGTETPDVPQQLYTVLEQKE 467

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: KUF89574.1 (hypothetical protein AM588_10002272 [Phytophthora nicotianae])

HSP 1 Score: 393.3 bits (1009), Expect = 1.400e-105
Identity = 265/437 (60.64%), Postives = 305/437 (69.79%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEVXXXXXXXXXXXXXXXXXXXXXXXXYGG--------GMETPMTDGTGLSSVVSGLATPAEGGIELRKKGXXXXXXXXXXXLYKVLEQKE 499
            VE+EYVSADL  EL+   +DP  +E   +F KFS+AEELCG  +     XXXXXXXXXXXXXXXXXXXXXXXXX                      RLSVAELKQLVA PDVVEAHDVTS DP+LLV++K+YRNTVPVPRHWCHKRKYL GKRG EK PF LPEFI  TGI + R+++ E    + ++Q+ RERV PKMGR+DIDY +L DAF R+QTKP LT  GD+YYEGKEFE   K+  PGQLS  L  AL +    PPPWL+N+QRYGPPP+YP L+IPGLNAP+PEGAS+G HPGGWGKPPVDE G PLYGDVFG   E   +        GEE+NR+ WGE+XXXXXXXXXXXXXXXXXXXXX     G        G+ETP+ D  G+SSV SGL TP  G ++LRK             LY VLEQKE
Sbjct:   54 VEVEYVSADLSKELALPQEDPAYEEMMRVFGKFSSAEELCGATDNEDGKXXXXXXXXXXXXXXXXXXXXXXXXXILSRKARKKS-----------KRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKTTESEKQ--------GEEINRERWGELXXXXXXXXXXXXXXXXXXXXXAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTP--GVVDLRKGIRGTETPDVPQQLYTVLEQKE 467

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: KUG02234.1 (Splicing factor 3B subunit 2 [Phytophthora nicotianae])

HSP 1 Score: 393.3 bits (1009), Expect = 1.400e-105
Identity = 262/437 (59.95%), Postives = 302/437 (69.11%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEVXXXXXXXXXXXXXXXXXXXXXXXXYGG--------GMETPMTDGTGLSSVVSGLATPAEGGIELRKKGXXXXXXXXXXXLYKVLEQKE 499
            VE+EYVSADL  EL+   +DP  +E   +F KFS+AEELCG  +      XXXXXXXXXXXXXXXXXXXXXX                        RLSVAELKQLVA PDVVEAHDVTS DP+LLV++K+YRNTVPVPRHWCHKRKYL GKRG EK PF LPEFI  TGI + R+++ E    + ++Q+ RERV PKMGR+DIDY +L DAF R+QTKP LT  GD+YYEGKEFE   K+  PGQLS  L  AL +    PPPWL+N+QRYGPPP+YP L+IPGLNAP+PEGAS+G HPGGWGKPPVDE G PLYGDVFG   E   +        GEE+NR+ WGE+XXXXXXXXXXXXXXXXXXXXX     G        G+ETP+ D  G+SSV SGL TP  G ++LRK             LY VLEQKE
Sbjct:   54 VEVEYVSADLSKELALPQEDPAYEEMMRVFGKFSSAEELCGATDNEDGKDXXXXXXXXXXXXXXXXXXXXXXEQILSRKARKKS-----------KRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKTTESEKQ--------GEEINRERWGELXXXXXXXXXXXXXXXXXXXXXAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTP--GVVDLRKGIRGTETPDVPQQLYTVLEQKE 467

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: ETP33681.1 (hypothetical protein F442_17816 [Phytophthora parasitica P10297])

HSP 1 Score: 392.5 bits (1007), Expect = 2.400e-105
Identity = 277/437 (63.39%), Postives = 316/437 (72.31%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEVXXXXXXXXXXXXXXXXXXXXXXXXYGG--------GMETPMTDGTGLSSVVSGLATPAEGGIELRKKGXXXXXXXXXXXLYKVLEQKE 499
            VE+EYVSADL  EL+   +DP  +E   +F KFS+AEELCG  +             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RLSVAELKQLVA PDVVEAHDVTS DP+LLV++K+YRNTVPVPRHWCHKRKYL GKRG EK PF LPEFI  TGI + R+++ E    + + Q+ RERV PKMGR+DIDY +L DAF R+QTKP LT  GD+YYEGKEFE   K+  PGQLS  L  AL +    PPPWL+N+QRYGPPP+YP L+IPGLNAP+PEGAS+G HPGGWGKPPVDE G PLYGDVFG   E   +        GEE+NR+ WGE+XXXXXXXXXXXXXXXXXXXXX     G        G+ETP+ D  G+SSV SGL TP  G ++LRK             LY VLEQKE
Sbjct:   54 VEVEYVSADLSKELALPQEDPAYEEMMRVFGKFSSAEELCGATDN-----------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNEQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKTTESEKQ--------GEEINRERWGELXXXXXXXXXXXXXXXXXXXXXAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTP--GVVDLRKGIRGTETPDVPQQLYTVLEQKE 467

[Close]

BLAST of NO09G00380 vs. NCBI_GenBank
Match: XP_024577803.1 (splicing factor 3b subunit 2-like [Plasmopara halstedii] >CEG41434.1 splicing factor 3b subunit 2-like [Plasmopara halstedii])

HSP 1 Score: 391.0 bits (1003), Expect = 6.900e-105
Identity = 266/435 (61.15%), Postives = 308/435 (70.80%), Query Frame = 0

Query:   70 VEIEYVSADLESELSAVGDDPVLDEFKEIFKKFSTAEELCGTAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKAYRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEKLSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYEGKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPALRIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEXXXXXXXXGEEVNRKHWGEV--XXXXXXXXXXXXXXXXXXXXXXXXYGG----GMETPMTDGTGLSSVVSGLATPAEGGIELRKKGXXXXXXXXXXXLYKVLEQKE 499
            VEIEYVSAD E EL+   DDP  +E   +F KF++AEELCG  +             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RLSVAELKQLV  PDVVEAHDVTS DP+LLV +K+YRNTVPVP HWCHKRKYL GKRG+EK PF LPEFI  TGI + RE++ E    + ++Q+ RERV PKMGR+DIDY +L DAF R+QTKP LT  GDLYYEGKEFE   K+  PGQLS+ L  AL +    PPPWL+N+QRYGPPP+YP L+IPGLNAP+PEGAS+G HPGGWGKPPVDE G PLYGDVFG + E   +        G+E+NR+ WGE+       XXXXXXXXXXX         GG    G++TP+ D  G+SS+ SGL TP  G ++LRK             LY VLEQKE
Sbjct:   54 VEIEYVSADPEKELTLPQDDPAYEEMMRVFGKFTSAEELCGVTDN-----------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSVAELKQLVTYPDVVEAHDVTSSDPRLLVFLKSYRNTVPVPHHWCHKRKYLQGKRGVEKPPFQLPEFIAHTGIAEMRESVAEDDEKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPQLTQLGDLYYEGKEFEVKLKSKVPGQLSNELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKVTEAENQ--------GQEINRERWGELNEQVEEEXXXXXXXXXXXLAEGTQETMGGLDATGLDTPLVD--GISSIASGLTTP--GVVDLRKGLRGTETPDAPQQLYTVLEQKE 465

The following BLAST results are available for this feature:

BLAST of NO09G00380 vs. NCBI_GenBank

BLAST of NO09G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM27761.1	1.400e-145	73.61	splicing factor 3b subunit 2 [Nannochloropsis gadi...	[more]
XP_005852444.1	1.200e-128	80.37	splicing factor 3B subunit 2, partial [Nannochloro...	[more]
XP_005854519.1	7.100e-126	70.59	splicing factor 3B subunit 2 [Nannochloropsis gadi...	[more]
ETO64444.1	1.100e-105	63.62	hypothetical protein F444_17999 [Phytophthora para...	[more]
XP_008896486.1	1.400e-105	63.39	hypothetical protein PPTG_04347 [Phytophthora para...	[more]
ETM35904.1	1.400e-105	63.39	hypothetical protein L914_17284 [Phytophthora para...	[more]
KUF89574.1	1.400e-105	60.64	hypothetical protein AM588_10002272 [Phytophthora ...	[more]
KUG02234.1	1.400e-105	59.95	Splicing factor 3B subunit 2 [Phytophthora nicotia...	[more]
ETP33681.1	2.400e-105	63.39	hypothetical protein F442_17816 [Phytophthora para...	[more]
XP_024577803.1	6.900e-105	61.15	splicing factor 3b subunit 2-like [Plasmopara hals...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL119	nonsL119	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR021	ncniR021	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR127	ngnoR127	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO09G00380.1	NO09G00380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26246	gene_4521	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100248g6	gene2806	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO09G00380.1	NO09G00380.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO09G00380 ID=NO09G00380|Name=NO09G00380|organism=Nannochloropsis oceanica|type=gene|length=2805bp
GTGTACATGAAAGTGGAAATATTATAAAGCCAAGCTTGGAGCGAGAGCGA
ACAAAGTTTGTGAACGCAGACTTTTTTCTTCTTCCACCTCCCCCGCCCCT
CCCCTTGCCTGACCTAACACACACTATCTACGTCTGTCTTGGTTCCCCAA
CCTTTCCTGTTTAAGAACTTTGTACTGAAACAACTAATAGAGGCATACTT
AGGCGCCGGGGTGGAACCGGGTGTCCTTGGACAAGGCTGCGTTTGGCGGT
TGATATCCCCTTCCCAGCCACGTTGTGTTGTGATAGATGATGCGGACTAC
CATCCATGTCCACTCACTTTTCACCCGTCATATACAGGCAAGCCAGTTCT
TTCGTCCACCAAGCACGCGAAAGAGGAAGTATAGAGCGCGTCGTGTAAGT
TTTCTTGGGAAGGGGCGTTGCGGTTGTCCCGTCTTGATCAGCCACCCTGG
GGAATCGGTGGGCAGGCGCGTGAAGCTGAGTGAGGACCAGAAAGACGCTG
CCATAAATACTACGTCTGCAAGCCACCTGCACCATGTCGGACGACGAGTA
CGACCACCAAGGTCAAAACGGCACCTCCCAGGCAAATGGGAAGCCGGCTG
GTAAGCTCTCCAAGAACCAAAGAAAAAGgtatgacatcgacctcccctcc
ctcctacctccctctctctctccctgttgaaggcccttccgcttatccat
ccttaacgcctttatgcctaccaaaccaaccatagAGAAAAGAAGAAGGT
TGCGAAGCAGGCGGCCAAGATGGAAGAAGGGGCCTCCACCAACGGCAGCA
GTAGCGCGCCCTCCTCCGCTCCTTCACATCCCCCTTCCACTCCTCGAGTG
GAGATCGAGTATGTTTCGGCGGACCTAGAGAGCGAGCTATCGGCTGTGGG
GGACGATCCCGTCCTGGATGAGTTCAAAGAGATTTTCAAGAAGTTTTCGA
CCGCGGAAGAATTGTGTGGAACCGCTGAAGGGGAGGAGGAGGAAGGCGAG
GAGGACGAGGACGAGGAGGGGGGTAAGAAGAAGAAGAAGGCTGGTGCCGG
AGGCGTTGATGGCGACAGTAGTGACGAGGAGGGGGATGAAGAGCGGGGGG
CCCGTCTTTCGCGGAAGCAGCGGAAAAAGCTTAATCGGTTGTCGGTCGCG
GAACTGAAGCAACTCGTGGCGCGGCCCGATGTGGTGGAGGCCCACGACGT
GACCTCCCAAGACCCCCAGCTGTTGGTCCACATCAAGGCCTACCGCAATA
CCGTCCCCGTCCCCCGGCACTGGTGCCACAAACGCAAGTACCTCACCGGC
AAACGTGGCATCGAAAAAGCGCCGTTTGACCTTCCTGAGTTCATCAAGGC
CACAGGCATCCAAAAACAACGCGAGGCTATGGAAGAGAAGCTCTCCCTGC
AAACTTCCCGTCAAAAAATGCGCGAACGCGTGAACCCCAAAATGGGTCGC
ATGGACATTGATTACGCCATTCTCGAGGATGCCTTTCTCCGGTACCAGAC
CAAGCCCTCCCTCACCTCCCACGGCGACCTCTATTACGAGGGCAAAGAGT
TTGAAACCCACACTAAGAACTACACCCCCGGCCAACTCTCCTCCGCCCTC
ATCGAGGCCCTGAGCATTCCCCCCCTCTACCCTCCCCCGTGGCTCATGAA
CATGCAGCGATATGGACCGCCGCCGTCTTATCCGGCGTTGCGGATTCCAG
GGCTGAATGCCCCCTTGCCGGAGGGGGCGAGTTATGGCATGCATCCCGGT
GGGTGGGGGAAGCCTCCCGTGGATGAGTACGGACGACCGCTGTATGGTGA
CGTATTTGGAGTGCTGGGGGAGGGAGGGACGGAGGGGAGGATGGGTGGCA
TGGGAGGCGGCGAAGAAGTGAACAGGAAGCATTGGGGAGAGGTAGAATAT
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGAGTGAGGG
GGAGGAAGGGGAAGAATATGGGGGAGGGATGGAGACGCCGATGACGGATG
GAACGGGTTTGAGTAGTGTGGTGAGCGGGTTGGCGACGCCGGCGGAGGGA
GGGATTGAGTTGAGGAAGAAGGGAGGGTTAGAGACGCCGAGTGAAGGGCC
AAGGGAGCTTTACAAGGTGCTTGAGCAGAAAGAGAGGGGGGAGGGCGGGG
GAGGAGGGTTTTTCGGGGGGGACAAGAGGTATGAGTTGGGGGGAGGAGGA
AAGGGAGGAGGAAGGGGGGGAGGGAGTGATGTGTCGATTGCCATCAATCC
TGATGAGCTGGTAGATCAGCTGGGCGATGAAGAGGCGCTCAAGGAGAGGT
ACGAGCAGGAGGTGGAGGCAAGGCAGACGGCGAAGCGACTGGCGGATGAC
GATAGTGACGAGGAGGGAGGAGGAGTGGGTGGAAGGGGGGGAGGAAGGAA
GAAGCGGAAGGCGGAGAAGGCGGGAGGGGGAGCAGGGGGGGTAAAGAAGA
GTAAGGAATTCAAATTTTAAGGATTTCAAAATTAAAAGGGAGGGGCACAT
GAGTAGGTCTTGTTATATACGTTGGGGGCGGAGGTAGGTAGAGGGAGACA
AGGGGAGTAGTGGAGGGGAAAGTGGGGGAGAGAGCGAATCCCTCTCAGGC
TAGTGACGAGAAGTAGTGAAGAACCAAGACAGGAAAGCTGATCAGCATCG
GACGAGAAAAGCGTGTAGTTTCCACACGCCCATTTGCGTACTTATTTCCT
CCCCCACACACAGATCAAACTTAAATTGAAGGGAAACTTTAACATTTCCA
CCCATTGGAAAAAGAACACCAAAAGAAATAAAACAAGGCAGTTTCTCGTC
TCGCC

protein sequence of NO09G00380.1

>NO09G00380.1-protein ID=NO09G00380.1-protein|Name=NO09G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MSDDEYDHQGQNGTSQANGKPAGKLSKNQRKREKKKVAKQAAKMEEGAST
NGSSSAPSSAPSHPPSTPRVEIEYVSADLESELSAVGDDPVLDEFKEIFK
KFSTAEELCGTAEGEEEEGEEDEDEEGGKKKKKAGAGGVDGDSSDEEGDE
ERGARLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVHIKA
YRNTVPVPRHWCHKRKYLTGKRGIEKAPFDLPEFIKATGIQKQREAMEEK
LSLQTSRQKMRERVNPKMGRMDIDYAILEDAFLRYQTKPSLTSHGDLYYE
GKEFETHTKNYTPGQLSSALIEALSIPPLYPPPWLMNMQRYGPPPSYPAL
RIPGLNAPLPEGASYGMHPGGWGKPPVDEYGRPLYGDVFGVLGEGGTEGR
MGGMGGGEEVNRKHWGEVEYEEEEEEEEEEEEEESEGEEGEEYGGGMETP
MTDGTGLSSVVSGLATPAEGGIELRKKGGLETPSEGPRELYKVLEQKERG
EGGGGGFFGGDKRYELGGGGKGGGRGGGSDVSIAINPDELVDQLGDEEAL
KERYEQEVEARQTAKRLADDDSDEEGGGVGGRGGGRKKRKAEKAGGGAGG
VKKSKEFKF*

Synonyms

Publications