NO09G00230, NO09G00230 (gene) Nannochloropsis oceanica

Overview
NameNO09G00230
Unique NameNO09G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1097
Alignment locationchr9:132516..133612 -

Link to JBrowse

Properties
Property NameValue
DescriptionHistone h3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:132516..133612 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR000164Histone_H3/CENP-A
Homology
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: EWM27785.1 (histone h3 [Nannochloropsis gaditana])

HSP 1 Score: 238.4 bits (607), Expect = 1.500e-59
Identity = 131/156 (83.97%), Postives = 134/156 (85.90%), Query Frame = 0 
Query:    1 MARMKTAKGSLGRGVVGGKG-SPRKVPRKQASPTRGAAXXXXXXXXXXXXXXXXXXXRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 156
            MARMKTAKG+LGRG+VGGKG SPRKVPRKQASP RG A                   RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLR+
Sbjct:    1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGA----GAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
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BLAST of NO09G00230 vs. NCBI_GenBank
Match: XP_005852580.1 (histone H3 [Nannochloropsis gaditana CCMP526] >EKU23254.1 histone H3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 217.6 bits (553), Expect = 2.700e-53
Identity = 121/155 (78.06%), Postives = 125/155 (80.65%), Query Frame = 0 
Query:    1 MARMKTAKGSLGRGVVGGKGSPRKVPRKQASPTRGAAXXXXXXXXXXXXXXXXXXXRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 156
            MARMKTAKG+LGRG+VGGKG+    PRK   P +                      RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE
Sbjct:    1 MARMKTAKGTLGRGIVGGKGTS---PRKDEEPKK----------------------RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 130
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: EJK71201.1 (hypothetical protein THAOC_07381 [Thalassiosira oceanica])

HSP 1 Score: 148.3 bits (373), Expect = 2.000e-32
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = 0 
Query:   57 RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 156
            RR RPG +ALREIRQYQ +T LLLRRLPFARLVRE+Q  ++ + YRWQ +++LALQEAAEAHLV LFED+NLCAIH KRVTIMPKDMQLARRIRG  RE
Sbjct:   50 RRMRPGEKALREIRQYQSSTTLLLRRLPFARLVREIQFGMTRQPYRWQGSAILALQEAAEAHLVSLFEDSNLCAIHGKRVTIMPKDMQLARRIRGIYRE 148
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: XP_002185353.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC43222.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 148.3 bits (373), Expect = 2.000e-32
Identity = 72/99 (72.73%), Postives = 86/99 (86.87%), Query Frame = 0 
Query:   57 RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 156
            RR RPG +AL+EI+ YQ++T+LL+RRLPFARLVRE+Q E+S + YRWQ  ++LALQEA+EAHLV LFED NLCA+H KRVTIMPKDMQLARRIRG  RE
Sbjct:    6 RRMRPGQKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGTAILALQEASEAHLVSLFEDTNLCALHGKRVTIMPKDMQLARRIRGQTRE 104
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: XP_008616979.1 (histone H3-like centromeric protein A [Saprolegnia diclina VS20] >EQC29675.1 histone H3-like centromeric protein A [Saprolegnia diclina VS20])

HSP 1 Score: 146.4 bits (368), Expect = 7.600e-32
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 0 
Query:   57 RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 152
            RR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q   +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG
Sbjct:   24 RRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLNYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG 118
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: XP_012208161.1 (hypothetical protein SPRG_12945 [Saprolegnia parasitica CBS 223.65] >KDO21164.1 hypothetical protein SPRG_12945 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 146.4 bits (368), Expect = 7.600e-32
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 0 
Query:   57 RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 152
            RR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q   +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG
Sbjct:   29 RRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLNYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG 123
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: OQR82908.1 (histone H3 variant [Achlya hypogyna])

HSP 1 Score: 146.4 bits (368), Expect = 7.600e-32
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 0 
Query:   57 RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 152
            RR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q   +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG
Sbjct:   26 RRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLHYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG 120
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: XP_002287626.1 (histone H3 [Thalassiosira pseudonana CCMP1335] >EED95069.1 histone H3 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 145.6 bits (366), Expect = 1.300e-31
Identity = 74/96 (77.08%), Postives = 85/96 (88.54%), Query Frame = 0 
Query:   60 RPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 156
            RPG +ALREIRQYQ +T LLLRRLPFARLVRE+Q  ++ + YRWQ +++LALQEAAEAHLV LFED+NLCAIH KRVTIMPKDMQLARRIRG +RE
Sbjct:    2 RPGEKALREIRQYQSSTSLLLRRLPFARLVREIQYGMTRQPYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRIRGWVRE 97
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: OEU16220.1 (histone H3.3 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 145.6 bits (366), Expect = 1.300e-31
Identity = 74/96 (77.08%), Postives = 83/96 (86.46%), Query Frame = 0 
Query:   60 RPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 156
            RPG +ALREIRQYQ +T+LLLRRLPFARLVRE+Q  +S   Y WQA+++LALQEA+EAHLV LFED NLCAIH KRVTIMPKDMQLARRIRG  RE
Sbjct:    2 RPGEKALREIRQYQNSTDLLLRRLPFARLVREIQQGLSRHSYSWQASAILALQEASEAHLVGLFEDCNLCAIHGKRVTIMPKDMQLARRIRGQNRE 97
[Close]
BLAST of NO09G00230 vs. NCBI_GenBank
Match: GAY05592.1 (histone H3 putative, partial [Pythium insidiosum])

HSP 1 Score: 145.6 bits (366), Expect = 1.300e-31
Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = 0 
Query:   57 RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 152
            RR RPG  ALREIR YQR+T+LLLR+LPFARLVRE+Q E +T++YRWQA +LLALQEAAEAHLV LF+DANLCAIHA RVT+M KD+QLARRIRG
Sbjct:   18 RRFRPGAVALREIRFYQRSTDLLLRKLPFARLVREIQMEFTTREYRWQAEALLALQEAAEAHLVRLFDDANLCAIHANRVTLMVKDIQLARRIRG 112
The following BLAST results are available for this feature:
BLAST of NO09G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27785.11.500e-5983.97histone h3 [Nannochloropsis gaditana][more]
XP_005852580.12.700e-5378.06histone H3 [Nannochloropsis gaditana CCMP526] >EKU... [more]
EJK71201.12.000e-3276.77hypothetical protein THAOC_07381 [Thalassiosira oc... [more]
XP_002185353.12.000e-3272.73predicted protein, partial [Phaeodactylum tricornu... [more]
XP_008616979.17.600e-3278.95histone H3-like centromeric protein A [Saprolegnia... [more]
XP_012208161.17.600e-3278.95hypothetical protein SPRG_12945 [Saprolegnia paras... [more]
OQR82908.17.600e-3278.95histone H3 variant [Achlya hypogyna][more]
XP_002287626.11.300e-3177.08histone H3 [Thalassiosira pseudonana CCMP1335] >EE... [more]
OEU16220.11.300e-3177.08histone H3.3 [Fragilariopsis cylindrus CCMP1102][more]
GAY05592.11.300e-3177.89histone H3 putative, partial [Pythium insidiosum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010457NSK010457Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00230.1NO09G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589465gene_4533Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100605g3gene2774Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00230.1NO09G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00230 ID=NO09G00230|Name=NO09G00230|organism=Nannochloropsis oceanica|type=gene|length=1097bp
ATGGCGCGGATGAAGACCGCCAAGGGTTCCTTGGGGCGCGGGGTGGTTGG
TGGCAAGGGCTCGCCAAGAAAAGgtgcgatgaaagaaaaaagagggaggg
ggcatttggacacctgccacacggcaacagaagccgaagcttacaaacgc
tttcatacatcccaacacggtacaattagTGCCGAGAAAACAGGCGTCGC
CCACGCGGGGTGCGGCGGGTGGGGGAGCAGACAGGGGACGGGGTAGAGGA
Ggtgagtttggggtagggagcaggtttttcctggaatgagtgatggaatc
gagagcaggggagaacgctttgcgtgggtgcgtgcatcaacagtagcagc
agcacttgtactagtagtgtgtggacagtttggccttgataatggatttc
gttacatgtggtgtgcgagcactagtaccaccacgggccagcggcaggtc
ttttgaagtatgtattatgttatgttacggtgcgttaacacagcaccttt
ttatccaagttcattcttcttaccggatagaaataagagagcggcacata
aatgcagatagatgtcatttgcccgtcctcacgcacgtttccctccccct
ctccctcccttccttccttccttcctcctgtaaagATGGGGACGAACCGC
CCAAGAAGCGACGTGCCCGGCCAGGCATGAGAGCGCTCCGTGAAATCAGA
CAATACCAACGCACCACCGAGCTGCTGCTGCGACGGCTGCCCTTCGCAAG
ACTTGTCCGCGAGGTGCAGGGAGAGATCAGTACGAAGCAATACCGTTGGC
AAGCCAACTCGCTACTGGCGCTGCAGGAGGCGGCCGAAGCCCACCTGGTG
CATTTGTTCGAGGACGCGAATCTGTGTGCGATTCATGCGAAGAGgcaagg
agaggagaggaccaaaggagggagggatggatgggcgtgtgggtgtgatg
agctttgcctgtctgtgcacaccgaatcgactcatttttattcacaagta
ccccttgcaacaccctccgttccacacacacagAGTGACTATTATGCCAA
AAGACATGCAACTAGCGAGGAGGATCCGTGGGCCCTTGAGGGAGTAG
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protein sequence of NO09G00230.1

>NO09G00230.1-protein ID=NO09G00230.1-protein|Name=NO09G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MARMKTAKGSLGRGVVGGKGSPRKVPRKQASPTRGAAGGGADRGRGRGDG
DEPPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQ
YRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIR
GPLRE*
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Synonyms
Publications